Package ome.xml.model

Class BasicAnnotation

    • Constructor Detail

      • BasicAnnotation

        public BasicAnnotation()
        Default constructor.
      • BasicAnnotation

        public BasicAnnotation​(Element element,
                               OMEModel model)
                        throws EnumerationException
        Constructs BasicAnnotation recursively from an XML DOM tree.
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • BasicAnnotation

        public BasicAnnotation​(BasicAnnotation orig)
        Copy constructor.
    • Method Detail

      • update

        public void update​(Element element,
                           OMEModel model)
                    throws EnumerationException
        Updates BasicAnnotation recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.
        Specified by:
        update in interface OMEModelObject
        Overrides:
        update in class Annotation
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • link

        public boolean link​(Reference reference,
                            OMEModelObject o)
        Description copied from interface: OMEModelObject
        Link a given OME model object to this model object.
        Specified by:
        link in interface OMEModelObject
        Overrides:
        link in class Annotation
        Parameters:
        reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.
        o - Model object to link to.
        Returns:
        true if this model object was able to handle the reference, false otherwise.
      • asXMLElement

        public Element asXMLElement​(Document document)
        Description copied from interface: OMEModelObject
        Takes the entire object hierarchy and produces an XML DOM tree.
        Specified by:
        asXMLElement in interface OMEModelObject
        Overrides:
        asXMLElement in class Annotation
        Parameters:
        document - Destination document for element creation, etc.
        Returns:
        XML DOM tree root element for this model object.
      • asXMLElement

        public Element asXMLElement​(Document document,
                                    Element BasicAnnotation_element)
        Description copied from class: AbstractOMEModelObject
        Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
        Overrides:
        asXMLElement in class Annotation
        Parameters:
        document - Destination document for element creation, etc.
        BasicAnnotation_element - Element from the subclass. If null a new element will be created of this class.
        Returns:
        element populated with properties from this class.