Package ome.xml.meta

Class AggregateMetadata

    • Method Detail

      • createRoot

        public void createRoot()
        Description copied from interface: MetadataStore
        Create root node. The action taken here is specific to the concrete metadata implementation.
        Specified by:
        createRoot in interface MetadataStore
      • getBooleanAnnotationAnnotationCount

        public int getBooleanAnnotationAnnotationCount​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a BooleanAnnotation. This method returns the number of references to the specified BooleanAnnotation held by all model objects.
        Specified by:
        getBooleanAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the number of BooleanAnnotation links.
      • getCommentAnnotationAnnotationCount

        public int getCommentAnnotationAnnotationCount​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a CommentAnnotation. This method returns the number of references to the specified CommentAnnotation held by all model objects.
        Specified by:
        getCommentAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the number of CommentAnnotation links.
      • getDoubleAnnotationAnnotationCount

        public int getDoubleAnnotationAnnotationCount​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a DoubleAnnotation. This method returns the number of references to the specified DoubleAnnotation held by all model objects.
        Specified by:
        getDoubleAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the number of DoubleAnnotation links.
      • getFileAnnotationAnnotationCount

        public int getFileAnnotationAnnotationCount​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a FileAnnotation. This method returns the number of references to the specified FileAnnotation held by all model objects.
        Specified by:
        getFileAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the number of FileAnnotation links.
      • getListAnnotationAnnotationCount

        public int getListAnnotationAnnotationCount​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a ListAnnotation. This method returns the number of references to the specified ListAnnotation held by all model objects.
        Specified by:
        getListAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the number of ListAnnotation links.
      • getLongAnnotationAnnotationCount

        public int getLongAnnotationAnnotationCount​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a LongAnnotation. This method returns the number of references to the specified LongAnnotation held by all model objects.
        Specified by:
        getLongAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the number of LongAnnotation links.
      • getMapAnnotationAnnotationCount

        public int getMapAnnotationAnnotationCount​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a MapAnnotation. This method returns the number of references to the specified MapAnnotation held by all model objects.
        Specified by:
        getMapAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the number of MapAnnotation links.
      • getTagAnnotationAnnotationCount

        public int getTagAnnotationAnnotationCount​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TagAnnotation. This method returns the number of references to the specified TagAnnotation held by all model objects.
        Specified by:
        getTagAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the number of TagAnnotation links.
      • getTermAnnotationAnnotationCount

        public int getTermAnnotationAnnotationCount​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TermAnnotation. This method returns the number of references to the specified TermAnnotation held by all model objects.
        Specified by:
        getTermAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the number of TermAnnotation links.
      • getTimestampAnnotationAnnotationCount

        public int getTimestampAnnotationAnnotationCount​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TimestampAnnotation. This method returns the number of references to the specified TimestampAnnotation held by all model objects.
        Specified by:
        getTimestampAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the number of TimestampAnnotation links.
      • getXMLAnnotationAnnotationCount

        public int getXMLAnnotationAnnotationCount​(int xmlAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to an XMLAnnotation. This method returns the number of references to the specified XMLAnnotation held by all model objects.
        Specified by:
        getXMLAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        xmlAnnotationIndex - the XMLAnnotation index.
        Returns:
        the number of XMLAnnotation links.
      • getLightSourceType

        public String getLightSourceType​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the type of a LightSource.
        Specified by:
        getLightSourceType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LightSource type.
      • getLightSourceCount

        public int getLightSourceCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of LightSource elements.
        Specified by:
        getLightSourceCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of LightSource elements.
      • getShapeType

        public String getShapeType​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the type of a Shape.
        Specified by:
        getShapeType in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Shape type.
      • getShapeCount

        public int getShapeCount​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Shape elements.
        Specified by:
        getShapeCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the number of Shape elements.
      • getChannelAnnotationRefCount

        public int getChannelAnnotationRefCount​(int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Channel.
        Specified by:
        getChannelAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of AnnotationRef elements.
      • getDatasetAnnotationRefCount

        public int getDatasetAnnotationRefCount​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Dataset.
        Specified by:
        getDatasetAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the number of AnnotationRef elements.
      • getDetectorAnnotationRefCount

        public int getDetectorAnnotationRefCount​(int instrumentIndex,
                                                 int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Detector.
        Specified by:
        getDetectorAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the number of AnnotationRef elements.
      • getDichroicAnnotationRefCount

        public int getDichroicAnnotationRefCount​(int instrumentIndex,
                                                 int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Dichroic.
        Specified by:
        getDichroicAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the number of AnnotationRef elements.
      • getExperimenterAnnotationRefCount

        public int getExperimenterAnnotationRefCount​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Experimenter.
        Specified by:
        getExperimenterAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the number of AnnotationRef elements.
      • getExperimenterGroupAnnotationRefCount

        public int getExperimenterGroupAnnotationRefCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in ExperimenterGroup.
        Specified by:
        getExperimenterGroupAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of AnnotationRef elements.
      • getFilterAnnotationRefCount

        public int getFilterAnnotationRefCount​(int instrumentIndex,
                                               int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Filter.
        Specified by:
        getFilterAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the number of AnnotationRef elements.
      • getFolderAnnotationRefCount

        public int getFolderAnnotationRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Folder.
        Specified by:
        getFolderAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of AnnotationRef elements.
      • getImageAnnotationRefCount

        public int getImageAnnotationRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Image.
        Specified by:
        getImageAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of AnnotationRef elements.
      • getInstrumentAnnotationRefCount

        public int getInstrumentAnnotationRefCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Instrument.
        Specified by:
        getInstrumentAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of AnnotationRef elements.
      • getLightPathAnnotationRefCount

        public int getLightPathAnnotationRefCount​(int imageIndex,
                                                  int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in LightPath.
        Specified by:
        getLightPathAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of AnnotationRef elements.
      • getLightSourceAnnotationRefCount

        public int getLightSourceAnnotationRefCount​(int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in LightSource.
        Specified by:
        getLightSourceAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the number of AnnotationRef elements.
      • getObjectiveAnnotationRefCount

        public int getObjectiveAnnotationRefCount​(int instrumentIndex,
                                                  int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Objective.
        Specified by:
        getObjectiveAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the number of AnnotationRef elements.
      • getPlaneAnnotationRefCount

        public int getPlaneAnnotationRefCount​(int imageIndex,
                                              int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Plane.
        Specified by:
        getPlaneAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the number of AnnotationRef elements.
      • getPlateAnnotationRefCount

        public int getPlateAnnotationRefCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Plate.
        Specified by:
        getPlateAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of AnnotationRef elements.
      • getPlateAcquisitionAnnotationRefCount

        public int getPlateAcquisitionAnnotationRefCount​(int plateIndex,
                                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in PlateAcquisition.
        Specified by:
        getPlateAcquisitionAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the number of AnnotationRef elements.
      • getProjectAnnotationRefCount

        public int getProjectAnnotationRefCount​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Project.
        Specified by:
        getProjectAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the number of AnnotationRef elements.
      • getROIAnnotationRefCount

        public int getROIAnnotationRefCount​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in ROI.
        Specified by:
        getROIAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the number of AnnotationRef elements.
      • getReagentAnnotationRefCount

        public int getReagentAnnotationRefCount​(int screenIndex,
                                                int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Reagent.
        Specified by:
        getReagentAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the number of AnnotationRef elements.
      • getScreenAnnotationRefCount

        public int getScreenAnnotationRefCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Screen.
        Specified by:
        getScreenAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of AnnotationRef elements.
      • getShapeAnnotationRefCount

        public int getShapeAnnotationRefCount​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Shape.
        Specified by:
        getShapeAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the number of AnnotationRef elements.
      • getWellAnnotationRefCount

        public int getWellAnnotationRefCount​(int plateIndex,
                                             int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Well.
        Specified by:
        getWellAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the number of AnnotationRef elements.
      • getPixelsBinDataCount

        public int getPixelsBinDataCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of BinData elements in Pixels.
        Specified by:
        getPixelsBinDataCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of BinData elements.
      • getBooleanAnnotationCount

        public int getBooleanAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of BooleanAnnotation elements.
        Specified by:
        getBooleanAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of BooleanAnnotation elements.
      • getChannelCount

        public int getChannelCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Channel elements.
        Specified by:
        getChannelCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of Channel elements.
      • getCommentAnnotationCount

        public int getCommentAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of CommentAnnotation elements.
        Specified by:
        getCommentAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of CommentAnnotation elements.
      • getDatasetCount

        public int getDatasetCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Dataset elements.
        Specified by:
        getDatasetCount in interface MetadataRetrieve
        Returns:
        the number of Dataset elements.
      • getDatasetRefCount

        public int getDatasetRefCount​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of DatasetRef elements.
        Specified by:
        getDatasetRefCount in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the number of DatasetRef elements.
      • getDetectorCount

        public int getDetectorCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Detector elements.
        Specified by:
        getDetectorCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Detector elements.
      • getDichroicCount

        public int getDichroicCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Dichroic elements.
        Specified by:
        getDichroicCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Dichroic elements.
      • getDoubleAnnotationCount

        public int getDoubleAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of DoubleAnnotation elements.
        Specified by:
        getDoubleAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of DoubleAnnotation elements.
      • getFilterSetEmissionFilterRefCount

        public int getFilterSetEmissionFilterRefCount​(int instrumentIndex,
                                                      int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of EmissionFilterRef elements in FilterSet.
        Specified by:
        getFilterSetEmissionFilterRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the number of EmissionFilterRef elements.
      • getLightPathEmissionFilterRefCount

        public int getLightPathEmissionFilterRefCount​(int imageIndex,
                                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of EmissionFilterRef elements in LightPath.
        Specified by:
        getLightPathEmissionFilterRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of EmissionFilterRef elements.
      • getFilterSetExcitationFilterRefCount

        public int getFilterSetExcitationFilterRefCount​(int instrumentIndex,
                                                        int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExcitationFilterRef elements in FilterSet.
        Specified by:
        getFilterSetExcitationFilterRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the number of ExcitationFilterRef elements.
      • getLightPathExcitationFilterRefCount

        public int getLightPathExcitationFilterRefCount​(int imageIndex,
                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExcitationFilterRef elements in LightPath.
        Specified by:
        getLightPathExcitationFilterRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of ExcitationFilterRef elements.
      • getExperimentCount

        public int getExperimentCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Experiment elements.
        Specified by:
        getExperimentCount in interface MetadataRetrieve
        Returns:
        the number of Experiment elements.
      • getExperimenterCount

        public int getExperimenterCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Experimenter elements.
        Specified by:
        getExperimenterCount in interface MetadataRetrieve
        Returns:
        the number of Experimenter elements.
      • getExperimenterGroupCount

        public int getExperimenterGroupCount()
        Description copied from interface: MetadataRetrieve
        Get the number of ExperimenterGroup elements.
        Specified by:
        getExperimenterGroupCount in interface MetadataRetrieve
        Returns:
        the number of ExperimenterGroup elements.
      • getExperimenterGroupExperimenterRefCount

        public int getExperimenterGroupExperimenterRefCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExperimenterRef elements in ExperimenterGroup.
        Specified by:
        getExperimenterGroupExperimenterRefCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of ExperimenterRef elements.
      • getFileAnnotationCount

        public int getFileAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of FileAnnotation elements.
        Specified by:
        getFileAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of FileAnnotation elements.
      • getFilterCount

        public int getFilterCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Filter elements.
        Specified by:
        getFilterCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Filter elements.
      • getFilterSetCount

        public int getFilterSetCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of FilterSet elements.
        Specified by:
        getFilterSetCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of FilterSet elements.
      • getFolderCount

        public int getFolderCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Folder elements.
        Specified by:
        getFolderCount in interface MetadataRetrieve
        Returns:
        the number of Folder elements.
      • getFolderRefCount

        public int getFolderRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of FolderRef elements.
        Specified by:
        getFolderRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of FolderRef elements.
      • getImageCount

        public int getImageCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Image elements.
        Specified by:
        getImageCount in interface MetadataRetrieve
        Returns:
        the number of Image elements.
      • getDatasetImageRefCount

        public int getDatasetImageRefCount​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ImageRef elements in Dataset.
        Specified by:
        getDatasetImageRefCount in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the number of ImageRef elements.
      • getFolderImageRefCount

        public int getFolderImageRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ImageRef elements in Folder.
        Specified by:
        getFolderImageRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of ImageRef elements.
      • getInstrumentCount

        public int getInstrumentCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Instrument elements.
        Specified by:
        getInstrumentCount in interface MetadataRetrieve
        Returns:
        the number of Instrument elements.
      • getLeaderCount

        public int getLeaderCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Leader elements.
        Specified by:
        getLeaderCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of Leader elements.
      • getMicrobeamManipulationLightSourceSettingsCount

        public int getMicrobeamManipulationLightSourceSettingsCount​(int experimentIndex,
                                                                    int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of LightSourceSettings elements in MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the number of LightSourceSettings elements.
      • getListAnnotationCount

        public int getListAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of ListAnnotation elements.
        Specified by:
        getListAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of ListAnnotation elements.
      • getLongAnnotationCount

        public int getLongAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of LongAnnotation elements.
        Specified by:
        getLongAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of LongAnnotation elements.
      • getMapAnnotationCount

        public int getMapAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of MapAnnotation elements.
        Specified by:
        getMapAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of MapAnnotation elements.
      • getMicrobeamManipulationCount

        public int getMicrobeamManipulationCount​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of MicrobeamManipulation elements.
        Specified by:
        getMicrobeamManipulationCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the number of MicrobeamManipulation elements.
      • getMicrobeamManipulationRefCount

        public int getMicrobeamManipulationRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of MicrobeamManipulationRef elements.
        Specified by:
        getMicrobeamManipulationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of MicrobeamManipulationRef elements.
      • getObjectiveCount

        public int getObjectiveCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Objective elements.
        Specified by:
        getObjectiveCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Objective elements.
      • getPlaneCount

        public int getPlaneCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Plane elements.
        Specified by:
        getPlaneCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of Plane elements.
      • getPlateCount

        public int getPlateCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Plate elements.
        Specified by:
        getPlateCount in interface MetadataRetrieve
        Returns:
        the number of Plate elements.
      • getPlateAcquisitionCount

        public int getPlateAcquisitionCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of PlateAcquisition elements.
        Specified by:
        getPlateAcquisitionCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of PlateAcquisition elements.
      • getPlateRefCount

        public int getPlateRefCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of PlateRef elements.
        Specified by:
        getPlateRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of PlateRef elements.
      • getProjectCount

        public int getProjectCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Project elements.
        Specified by:
        getProjectCount in interface MetadataRetrieve
        Returns:
        the number of Project elements.
      • getROICount

        public int getROICount()
        Description copied from interface: MetadataRetrieve
        Get the number of ROI elements.
        Specified by:
        getROICount in interface MetadataRetrieve
        Returns:
        the number of ROI elements.
      • getFolderROIRefCount

        public int getFolderROIRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in Folder.
        Specified by:
        getFolderROIRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of ROIRef elements.
      • getImageROIRefCount

        public int getImageROIRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in Image.
        Specified by:
        getImageROIRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of ROIRef elements.
      • getMicrobeamManipulationROIRefCount

        public int getMicrobeamManipulationROIRefCount​(int experimentIndex,
                                                       int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationROIRefCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the number of ROIRef elements.
      • getReagentCount

        public int getReagentCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Reagent elements.
        Specified by:
        getReagentCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of Reagent elements.
      • getScreenCount

        public int getScreenCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Screen elements.
        Specified by:
        getScreenCount in interface MetadataRetrieve
        Returns:
        the number of Screen elements.
      • getTagAnnotationCount

        public int getTagAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TagAnnotation elements.
        Specified by:
        getTagAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TagAnnotation elements.
      • getTermAnnotationCount

        public int getTermAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TermAnnotation elements.
        Specified by:
        getTermAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TermAnnotation elements.
      • getTiffDataCount

        public int getTiffDataCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of TiffData elements.
        Specified by:
        getTiffDataCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of TiffData elements.
      • getTimestampAnnotationCount

        public int getTimestampAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TimestampAnnotation elements.
        Specified by:
        getTimestampAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TimestampAnnotation elements.
      • setUUIDValue

        public void setUUIDValue​(String value,
                                 int imageIndex,
                                 int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the text value of UUID.
        Specified by:
        setUUIDValue in interface MetadataStore
        Parameters:
        value - text value.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • getUUIDValue

        public String getUUIDValue​(int imageIndex,
                                   int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the text value of UUID.
        Specified by:
        getUUIDValue in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the text value.
      • getWellCount

        public int getWellCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Well elements.
        Specified by:
        getWellCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of Well elements.
      • getWellSampleCount

        public int getWellSampleCount​(int plateIndex,
                                      int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of WellSample elements.
        Specified by:
        getWellSampleCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the number of WellSample elements.
      • getWellSampleRefCount

        public int getWellSampleRefCount​(int plateIndex,
                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of WellSampleRef elements.
        Specified by:
        getWellSampleRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the number of WellSampleRef elements.
      • getXMLAnnotationCount

        public int getXMLAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of XMLAnnotation elements.
        Specified by:
        getXMLAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of XMLAnnotation elements.
      • getUUID

        public String getUUID()
        Gets the UUID associated with this collection of metadata.
        Specified by:
        getUUID in interface MetadataRetrieve
        Returns:
        the UUID.
      • getCreator

        public String getCreator()
        Gets the Creator associated with this collection of metadata.
        Specified by:
        getCreator in interface MetadataRetrieve
      • getMapAnnotationValue

        public List<MapPair> getMapAnnotationValue​(int mapAnnotationIndex)
        Gets the Map value associated with this annotation
        Specified by:
        getMapAnnotationValue in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the MapAnnotation values.
      • getGenericExcitationSourceMap

        public List<MapPair> getGenericExcitationSourceMap​(int instrumentIndex,
                                                           int lightSourceIndex)
        Gets the Map value associated with this generic light source
        Specified by:
        getGenericExcitationSourceMap in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the MapAnnotation values.
      • getImagingEnvironmentMap

        public List<MapPair> getImagingEnvironmentMap​(int imageIndex)
        Gets the Map value associated with this imaging environment
        Specified by:
        getImagingEnvironmentMap in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the MapAnnotation values.
      • getArcAnnotationRef

        public String getArcAnnotationRef​(int instrumentIndex,
                                          int lightSourceIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Arc.
        Specified by:
        getArcAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getArcID

        public String getArcID​(int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Arc.
        Specified by:
        getArcID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getArcLotNumber

        public String getArcLotNumber​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Arc.
        Specified by:
        getArcLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getArcManufacturer

        public String getArcManufacturer​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Arc.
        Specified by:
        getArcManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getArcModel

        public String getArcModel​(int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Arc.
        Specified by:
        getArcModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getArcPower

        public Power getArcPower​(int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Arc.
        Specified by:
        getArcPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getArcSerialNumber

        public String getArcSerialNumber​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Arc.
        Specified by:
        getArcSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getArcType

        public ArcType getArcType​(int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Arc.
        Specified by:
        getArcType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getBinaryFileBinData

        public byte[] getBinaryFileBinData​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getBinaryFileBinData in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Base64Binary property.
      • getMaskBinData

        public byte[] getMaskBinData​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getMaskBinData in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Base64Binary property.
      • getPixelsBinData

        public byte[] getPixelsBinData​(int imageIndex,
                                       int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getPixelsBinData in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Base64Binary property.
      • getBinaryFileBinDataBigEndian

        public Boolean getBinaryFileBinDataBigEndian​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getBinaryFileBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the BigEndian property.
      • getMaskBinDataBigEndian

        public Boolean getMaskBinDataBigEndian​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getMaskBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the BigEndian property.
      • getPixelsBinDataBigEndian

        public Boolean getPixelsBinDataBigEndian​(int imageIndex,
                                                 int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getPixelsBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the BigEndian property.
      • getBinaryFileBinDataCompression

        public Compression getBinaryFileBinDataCompression​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getBinaryFileBinDataCompression in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Compression property.
      • getMaskBinDataCompression

        public Compression getMaskBinDataCompression​(int ROIIndex,
                                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getMaskBinDataCompression in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Compression property.
      • getPixelsBinDataCompression

        public Compression getPixelsBinDataCompression​(int imageIndex,
                                                       int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getPixelsBinDataCompression in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Compression property.
      • getMaskBinDataLength

        public NonNegativeLong getMaskBinDataLength​(int ROIIndex,
                                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Length property of BinData.
        Specified by:
        getMaskBinDataLength in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Length property.
      • getPixelsBinDataLength

        public NonNegativeLong getPixelsBinDataLength​(int imageIndex,
                                                      int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Length property of BinData.
        Specified by:
        getPixelsBinDataLength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Length property.
      • getBinaryFileFileName

        public String getBinaryFileFileName​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the FileName property of BinaryFile.
        Specified by:
        getBinaryFileFileName in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the FileName property.
      • getBinaryFileMIMEType

        public String getBinaryFileMIMEType​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the MIMEType property of BinaryFile.
        Specified by:
        getBinaryFileMIMEType in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the MIMEType property.
      • getBinaryFileSize

        public NonNegativeLong getBinaryFileSize​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Size property of BinaryFile.
        Specified by:
        getBinaryFileSize in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Size property.
      • getBooleanAnnotationAnnotationRef

        public String getBooleanAnnotationAnnotationRef​(int booleanAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getBooleanAnnotationAnnotator

        public String getBooleanAnnotationAnnotator​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Annotator property.
      • getBooleanAnnotationDescription

        public String getBooleanAnnotationDescription​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationDescription in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Description property.
      • getBooleanAnnotationID

        public String getBooleanAnnotationID​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationID in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the ID property.
      • getBooleanAnnotationNamespace

        public String getBooleanAnnotationNamespace​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Namespace property.
      • getBooleanAnnotationValue

        public Boolean getBooleanAnnotationValue​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationValue in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Value property.
      • getChannelAcquisitionMode

        public AcquisitionMode getChannelAcquisitionMode​(int imageIndex,
                                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the AcquisitionMode property of Channel.
        Specified by:
        getChannelAcquisitionMode in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the AcquisitionMode property.
      • getChannelAnnotationRef

        public String getChannelAnnotationRef​(int imageIndex,
                                              int channelIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Channel.
        Specified by:
        getChannelAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getChannelColor

        public Color getChannelColor​(int imageIndex,
                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Color property of Channel.
        Specified by:
        getChannelColor in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Color property.
      • getChannelContrastMethod

        public ContrastMethod getChannelContrastMethod​(int imageIndex,
                                                       int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ContrastMethod property of Channel.
        Specified by:
        getChannelContrastMethod in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ContrastMethod property.
      • getChannelEmissionWavelength

        public Length getChannelEmissionWavelength​(int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionWavelength property of Channel.
        Specified by:
        getChannelEmissionWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the EmissionWavelength property.
      • getChannelExcitationWavelength

        public Length getChannelExcitationWavelength​(int imageIndex,
                                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationWavelength property of Channel.
        Specified by:
        getChannelExcitationWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ExcitationWavelength property.
      • getChannelFilterSetRef

        public String getChannelFilterSetRef​(int imageIndex,
                                             int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the FilterSetRef property of Channel.
        Specified by:
        getChannelFilterSetRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the FilterSetRef property.
      • getChannelFluor

        public String getChannelFluor​(int imageIndex,
                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Fluor property of Channel.
        Specified by:
        getChannelFluor in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Fluor property.
      • getChannelID

        public String getChannelID​(int imageIndex,
                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Channel.
        Specified by:
        getChannelID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getChannelIlluminationType

        public IlluminationType getChannelIlluminationType​(int imageIndex,
                                                           int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the IlluminationType property of Channel.
        Specified by:
        getChannelIlluminationType in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the IlluminationType property.
      • getChannelNDFilter

        public Double getChannelNDFilter​(int imageIndex,
                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the NDFilter property of Channel.
        Specified by:
        getChannelNDFilter in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the NDFilter property.
      • getChannelName

        public String getChannelName​(int imageIndex,
                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Channel.
        Specified by:
        getChannelName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Name property.
      • getChannelPinholeSize

        public Length getChannelPinholeSize​(int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the PinholeSize property of Channel.
        Specified by:
        getChannelPinholeSize in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the PinholeSize property.
      • getChannelPockelCellSetting

        public Integer getChannelPockelCellSetting​(int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the PockelCellSetting property of Channel.
        Specified by:
        getChannelPockelCellSetting in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the PockelCellSetting property.
      • getChannelSamplesPerPixel

        public PositiveInteger getChannelSamplesPerPixel​(int imageIndex,
                                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the SamplesPerPixel property of Channel.
        Specified by:
        getChannelSamplesPerPixel in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the SamplesPerPixel property.
      • getCommentAnnotationAnnotationRef

        public String getCommentAnnotationAnnotationRef​(int commentAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of CommentAnnotation.
        Specified by:
        getCommentAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getCommentAnnotationAnnotator

        public String getCommentAnnotationAnnotator​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of CommentAnnotation.
        Specified by:
        getCommentAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Annotator property.
      • getCommentAnnotationDescription

        public String getCommentAnnotationDescription​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of CommentAnnotation.
        Specified by:
        getCommentAnnotationDescription in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Description property.
      • getCommentAnnotationID

        public String getCommentAnnotationID​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of CommentAnnotation.
        Specified by:
        getCommentAnnotationID in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the ID property.
      • getCommentAnnotationNamespace

        public String getCommentAnnotationNamespace​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of CommentAnnotation.
        Specified by:
        getCommentAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Namespace property.
      • getCommentAnnotationValue

        public String getCommentAnnotationValue​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of CommentAnnotation.
        Specified by:
        getCommentAnnotationValue in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Value property.
      • getDatasetAnnotationRef

        public String getDatasetAnnotationRef​(int datasetIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Dataset.
        Specified by:
        getDatasetAnnotationRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDatasetDescription

        public String getDatasetDescription​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Dataset.
        Specified by:
        getDatasetDescription in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the Description property.
      • getDatasetExperimenterGroupRef

        public String getDatasetExperimenterGroupRef​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Dataset.
        Specified by:
        getDatasetExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ExperimenterGroupRef property.
      • getDatasetExperimenterRef

        public String getDatasetExperimenterRef​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Dataset.
        Specified by:
        getDatasetExperimenterRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ExperimenterRef property.
      • getDatasetID

        public String getDatasetID​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Dataset.
        Specified by:
        getDatasetID in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ID property.
      • getDatasetImageRef

        public String getDatasetImageRef​(int datasetIndex,
                                         int imageRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of Dataset.
        Specified by:
        getDatasetImageRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        imageRefIndex - ImageRef index.
        Returns:
        the ImageRef property.
      • getDatasetName

        public String getDatasetName​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Dataset.
        Specified by:
        getDatasetName in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the Name property.
      • getDetectorAmplificationGain

        public Double getDetectorAmplificationGain​(int instrumentIndex,
                                                   int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the AmplificationGain property of Detector.
        Specified by:
        getDetectorAmplificationGain in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the AmplificationGain property.
      • getDetectorAnnotationRef

        public String getDetectorAnnotationRef​(int instrumentIndex,
                                               int detectorIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Detector.
        Specified by:
        getDetectorAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDetectorGain

        public Double getDetectorGain​(int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Gain property of Detector.
        Specified by:
        getDetectorGain in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Gain property.
      • getDetectorID

        public String getDetectorID​(int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Detector.
        Specified by:
        getDetectorID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the ID property.
      • getDetectorLotNumber

        public String getDetectorLotNumber​(int instrumentIndex,
                                           int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Detector.
        Specified by:
        getDetectorLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the LotNumber property.
      • getDetectorManufacturer

        public String getDetectorManufacturer​(int instrumentIndex,
                                              int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Detector.
        Specified by:
        getDetectorManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Manufacturer property.
      • getDetectorModel

        public String getDetectorModel​(int instrumentIndex,
                                       int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Detector.
        Specified by:
        getDetectorModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Model property.
      • getDetectorOffset

        public Double getDetectorOffset​(int instrumentIndex,
                                        int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Offset property of Detector.
        Specified by:
        getDetectorOffset in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Offset property.
      • getDetectorSerialNumber

        public String getDetectorSerialNumber​(int instrumentIndex,
                                              int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Detector.
        Specified by:
        getDetectorSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the SerialNumber property.
      • getDetectorType

        public DetectorType getDetectorType​(int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Detector.
        Specified by:
        getDetectorType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Type property.
      • getDetectorVoltage

        public ElectricPotential getDetectorVoltage​(int instrumentIndex,
                                                    int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Voltage property of Detector.
        Specified by:
        getDetectorVoltage in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Voltage property.
      • getDetectorZoom

        public Double getDetectorZoom​(int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Zoom property of Detector.
        Specified by:
        getDetectorZoom in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Zoom property.
      • getDetectorSettingsBinning

        public Binning getDetectorSettingsBinning​(int imageIndex,
                                                  int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Binning property of DetectorSettings.
        Specified by:
        getDetectorSettingsBinning in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Binning property.
      • getDetectorSettingsGain

        public Double getDetectorSettingsGain​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Gain property of DetectorSettings.
        Specified by:
        getDetectorSettingsGain in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Gain property.
      • getDetectorSettingsID

        public String getDetectorSettingsID​(int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of DetectorSettings.
        Specified by:
        getDetectorSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getDetectorSettingsIntegration

        public PositiveInteger getDetectorSettingsIntegration​(int imageIndex,
                                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Integration property of DetectorSettings.
        Specified by:
        getDetectorSettingsIntegration in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Integration property.
      • getDetectorSettingsOffset

        public Double getDetectorSettingsOffset​(int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Offset property of DetectorSettings.
        Specified by:
        getDetectorSettingsOffset in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Offset property.
      • getDetectorSettingsReadOutRate

        public Frequency getDetectorSettingsReadOutRate​(int imageIndex,
                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReadOutRate property of DetectorSettings.
        Specified by:
        getDetectorSettingsReadOutRate in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ReadOutRate property.
      • getDetectorSettingsVoltage

        public ElectricPotential getDetectorSettingsVoltage​(int imageIndex,
                                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Voltage property of DetectorSettings.
        Specified by:
        getDetectorSettingsVoltage in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Voltage property.
      • getDetectorSettingsZoom

        public Double getDetectorSettingsZoom​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Zoom property of DetectorSettings.
        Specified by:
        getDetectorSettingsZoom in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Zoom property.
      • getDichroicAnnotationRef

        public String getDichroicAnnotationRef​(int instrumentIndex,
                                               int dichroicIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Dichroic.
        Specified by:
        getDichroicAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDichroicID

        public String getDichroicID​(int instrumentIndex,
                                    int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Dichroic.
        Specified by:
        getDichroicID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the ID property.
      • getDichroicLotNumber

        public String getDichroicLotNumber​(int instrumentIndex,
                                           int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Dichroic.
        Specified by:
        getDichroicLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the LotNumber property.
      • getDichroicManufacturer

        public String getDichroicManufacturer​(int instrumentIndex,
                                              int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Dichroic.
        Specified by:
        getDichroicManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the Manufacturer property.
      • getDichroicModel

        public String getDichroicModel​(int instrumentIndex,
                                       int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Dichroic.
        Specified by:
        getDichroicModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the Model property.
      • getDichroicSerialNumber

        public String getDichroicSerialNumber​(int instrumentIndex,
                                              int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Dichroic.
        Specified by:
        getDichroicSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the SerialNumber property.
      • getDoubleAnnotationAnnotationRef

        public String getDoubleAnnotationAnnotationRef​(int doubleAnnotationIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDoubleAnnotationAnnotator

        public String getDoubleAnnotationAnnotator​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Annotator property.
      • getDoubleAnnotationDescription

        public String getDoubleAnnotationDescription​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationDescription in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Description property.
      • getDoubleAnnotationID

        public String getDoubleAnnotationID​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationID in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the ID property.
      • getDoubleAnnotationNamespace

        public String getDoubleAnnotationNamespace​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Namespace property.
      • getDoubleAnnotationValue

        public Double getDoubleAnnotationValue​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationValue in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Value property.
      • getEllipseAnnotationRef

        public String getEllipseAnnotationRef​(int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Ellipse.
        Specified by:
        getEllipseAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getEllipseFillColor

        public Color getEllipseFillColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Ellipse.
        Specified by:
        getEllipseFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getEllipseFillRule

        public FillRule getEllipseFillRule​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Ellipse.
        Specified by:
        getEllipseFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getEllipseFontFamily

        public FontFamily getEllipseFontFamily​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Ellipse.
        Specified by:
        getEllipseFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getEllipseFontSize

        public Length getEllipseFontSize​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Ellipse.
        Specified by:
        getEllipseFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getEllipseFontStyle

        public FontStyle getEllipseFontStyle​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Ellipse.
        Specified by:
        getEllipseFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getEllipseID

        public String getEllipseID​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Ellipse.
        Specified by:
        getEllipseID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getEllipseLocked

        public Boolean getEllipseLocked​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Ellipse.
        Specified by:
        getEllipseLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getEllipseRadiusX

        public Double getEllipseRadiusX​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the RadiusX property of Ellipse.
        Specified by:
        getEllipseRadiusX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the RadiusX property.
      • getEllipseRadiusY

        public Double getEllipseRadiusY​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the RadiusY property of Ellipse.
        Specified by:
        getEllipseRadiusY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the RadiusY property.
      • getEllipseStrokeColor

        public Color getEllipseStrokeColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Ellipse.
        Specified by:
        getEllipseStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getEllipseStrokeDashArray

        public String getEllipseStrokeDashArray​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Ellipse.
        Specified by:
        getEllipseStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getEllipseStrokeWidth

        public Length getEllipseStrokeWidth​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Ellipse.
        Specified by:
        getEllipseStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getEllipseText

        public String getEllipseText​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Ellipse.
        Specified by:
        getEllipseText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getEllipseTheC

        public NonNegativeInteger getEllipseTheC​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Ellipse.
        Specified by:
        getEllipseTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getEllipseTheT

        public NonNegativeInteger getEllipseTheT​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Ellipse.
        Specified by:
        getEllipseTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getEllipseTheZ

        public NonNegativeInteger getEllipseTheZ​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Ellipse.
        Specified by:
        getEllipseTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getEllipseTransform

        public AffineTransform getEllipseTransform​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Ellipse.
        Specified by:
        getEllipseTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getEllipseX

        public Double getEllipseX​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Ellipse.
        Specified by:
        getEllipseX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getEllipseY

        public Double getEllipseY​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Ellipse.
        Specified by:
        getEllipseY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getExperimentDescription

        public String getExperimentDescription​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Experiment.
        Specified by:
        getExperimentDescription in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the Description property.
      • getExperimentExperimenterRef

        public String getExperimentExperimenterRef​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Experiment.
        Specified by:
        getExperimentExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the ExperimenterRef property.
      • getExperimentID

        public String getExperimentID​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Experiment.
        Specified by:
        getExperimentID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the ID property.
      • getExperimentType

        public ExperimentType getExperimentType​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Experiment.
        Specified by:
        getExperimentType in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the Type property.
      • getExperimenterAnnotationRef

        public String getExperimenterAnnotationRef​(int experimenterIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Experimenter.
        Specified by:
        getExperimenterAnnotationRef in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getExperimenterEmail

        public String getExperimenterEmail​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Email property of Experimenter.
        Specified by:
        getExperimenterEmail in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the Email property.
      • getExperimenterFirstName

        public String getExperimenterFirstName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstName property of Experimenter.
        Specified by:
        getExperimenterFirstName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the FirstName property.
      • getExperimenterID

        public String getExperimenterID​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Experimenter.
        Specified by:
        getExperimenterID in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the ID property.
      • getExperimenterInstitution

        public String getExperimenterInstitution​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Institution property of Experimenter.
        Specified by:
        getExperimenterInstitution in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the Institution property.
      • getExperimenterLastName

        public String getExperimenterLastName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the LastName property of Experimenter.
        Specified by:
        getExperimenterLastName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the LastName property.
      • getExperimenterMiddleName

        public String getExperimenterMiddleName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the MiddleName property of Experimenter.
        Specified by:
        getExperimenterMiddleName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the MiddleName property.
      • getExperimenterUserName

        public String getExperimenterUserName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the UserName property of Experimenter.
        Specified by:
        getExperimenterUserName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the UserName property.
      • getExperimenterGroupAnnotationRef

        public String getExperimenterGroupAnnotationRef​(int experimenterGroupIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupAnnotationRef in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getExperimenterGroupDescription

        public String getExperimenterGroupDescription​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupDescription in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the Description property.
      • getExperimenterGroupExperimenterRef

        public String getExperimenterGroupExperimenterRef​(int experimenterGroupIndex,
                                                          int experimenterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        experimenterRefIndex - ExperimenterRef index.
        Returns:
        the ExperimenterRef property.
      • getExperimenterGroupID

        public String getExperimenterGroupID​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupID in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the ID property.
      • getExperimenterGroupLeader

        public String getExperimenterGroupLeader​(int experimenterGroupIndex,
                                                 int leaderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Leader property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupLeader in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        leaderIndex - Leader index.
        Returns:
        the Leader property.
      • getExperimenterGroupName

        public String getExperimenterGroupName​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupName in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the Name property.
      • getFilamentAnnotationRef

        public String getFilamentAnnotationRef​(int instrumentIndex,
                                               int lightSourceIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Filament.
        Specified by:
        getFilamentAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFilamentID

        public String getFilamentID​(int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Filament.
        Specified by:
        getFilamentID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getFilamentLotNumber

        public String getFilamentLotNumber​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Filament.
        Specified by:
        getFilamentLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getFilamentManufacturer

        public String getFilamentManufacturer​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Filament.
        Specified by:
        getFilamentManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getFilamentModel

        public String getFilamentModel​(int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Filament.
        Specified by:
        getFilamentModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getFilamentPower

        public Power getFilamentPower​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Filament.
        Specified by:
        getFilamentPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getFilamentSerialNumber

        public String getFilamentSerialNumber​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Filament.
        Specified by:
        getFilamentSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getFilamentType

        public FilamentType getFilamentType​(int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Filament.
        Specified by:
        getFilamentType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getFileAnnotationAnnotationRef

        public String getFileAnnotationAnnotationRef​(int fileAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of FileAnnotation.
        Specified by:
        getFileAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFileAnnotationAnnotator

        public String getFileAnnotationAnnotator​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of FileAnnotation.
        Specified by:
        getFileAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Annotator property.
      • getFileAnnotationDescription

        public String getFileAnnotationDescription​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of FileAnnotation.
        Specified by:
        getFileAnnotationDescription in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Description property.
      • getFileAnnotationID

        public String getFileAnnotationID​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of FileAnnotation.
        Specified by:
        getFileAnnotationID in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the ID property.
      • getFileAnnotationNamespace

        public String getFileAnnotationNamespace​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of FileAnnotation.
        Specified by:
        getFileAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Namespace property.
      • getFilterAnnotationRef

        public String getFilterAnnotationRef​(int instrumentIndex,
                                             int filterIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Filter.
        Specified by:
        getFilterAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFilterFilterWheel

        public String getFilterFilterWheel​(int instrumentIndex,
                                           int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the FilterWheel property of Filter.
        Specified by:
        getFilterFilterWheel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the FilterWheel property.
      • getFilterID

        public String getFilterID​(int instrumentIndex,
                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Filter.
        Specified by:
        getFilterID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the ID property.
      • getFilterLotNumber

        public String getFilterLotNumber​(int instrumentIndex,
                                         int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Filter.
        Specified by:
        getFilterLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the LotNumber property.
      • getFilterManufacturer

        public String getFilterManufacturer​(int instrumentIndex,
                                            int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Filter.
        Specified by:
        getFilterManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Manufacturer property.
      • getFilterModel

        public String getFilterModel​(int instrumentIndex,
                                     int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Filter.
        Specified by:
        getFilterModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Model property.
      • getFilterSerialNumber

        public String getFilterSerialNumber​(int instrumentIndex,
                                            int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Filter.
        Specified by:
        getFilterSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the SerialNumber property.
      • getFilterType

        public FilterType getFilterType​(int instrumentIndex,
                                        int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Filter.
        Specified by:
        getFilterType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Type property.
      • getFilterSetDichroicRef

        public String getFilterSetDichroicRef​(int instrumentIndex,
                                              int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the DichroicRef property of FilterSet.
        Specified by:
        getFilterSetDichroicRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the DichroicRef property.
      • getFilterSetEmissionFilterRef

        public String getFilterSetEmissionFilterRef​(int instrumentIndex,
                                                    int filterSetIndex,
                                                    int emissionFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionFilterRef property of FilterSet.
        Specified by:
        getFilterSetEmissionFilterRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        emissionFilterRefIndex - EmissionFilterRef index.
        Returns:
        the EmissionFilterRef property.
      • getFilterSetExcitationFilterRef

        public String getFilterSetExcitationFilterRef​(int instrumentIndex,
                                                      int filterSetIndex,
                                                      int excitationFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationFilterRef property of FilterSet.
        Specified by:
        getFilterSetExcitationFilterRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        excitationFilterRefIndex - ExcitationFilterRef index.
        Returns:
        the ExcitationFilterRef property.
      • getFilterSetID

        public String getFilterSetID​(int instrumentIndex,
                                     int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of FilterSet.
        Specified by:
        getFilterSetID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the ID property.
      • getFilterSetLotNumber

        public String getFilterSetLotNumber​(int instrumentIndex,
                                            int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of FilterSet.
        Specified by:
        getFilterSetLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the LotNumber property.
      • getFilterSetManufacturer

        public String getFilterSetManufacturer​(int instrumentIndex,
                                               int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of FilterSet.
        Specified by:
        getFilterSetManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the Manufacturer property.
      • getFilterSetModel

        public String getFilterSetModel​(int instrumentIndex,
                                        int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of FilterSet.
        Specified by:
        getFilterSetModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the Model property.
      • getFilterSetSerialNumber

        public String getFilterSetSerialNumber​(int instrumentIndex,
                                               int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of FilterSet.
        Specified by:
        getFilterSetSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the SerialNumber property.
      • getFolderAnnotationRef

        public String getFolderAnnotationRef​(int folderIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Folder.
        Specified by:
        getFolderAnnotationRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFolderDescription

        public String getFolderDescription​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Folder.
        Specified by:
        getFolderDescription in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the Description property.
      • getFolderFolderRef

        public String getFolderFolderRef​(int folderIndex,
                                         int folderRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the FolderRef property of Folder.
        Specified by:
        getFolderFolderRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        folderRefIndex - FolderRef index.
        Returns:
        the FolderRef property.
      • getFolderID

        public String getFolderID​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Folder.
        Specified by:
        getFolderID in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the ID property.
      • getFolderImageRef

        public String getFolderImageRef​(int folderIndex,
                                        int imageRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of Folder.
        Specified by:
        getFolderImageRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        imageRefIndex - ImageRef index.
        Returns:
        the ImageRef property.
      • getFolderName

        public String getFolderName​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Folder.
        Specified by:
        getFolderName in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the Name property.
      • getFolderROIRef

        public String getFolderROIRef​(int folderIndex,
                                      int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of Folder.
        Specified by:
        getFolderROIRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getGenericExcitationSourceAnnotationRef

        public String getGenericExcitationSourceAnnotationRef​(int instrumentIndex,
                                                              int lightSourceIndex,
                                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getGenericExcitationSourceID

        public String getGenericExcitationSourceID​(int instrumentIndex,
                                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getGenericExcitationSourceLotNumber

        public String getGenericExcitationSourceLotNumber​(int instrumentIndex,
                                                          int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getGenericExcitationSourceManufacturer

        public String getGenericExcitationSourceManufacturer​(int instrumentIndex,
                                                             int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getGenericExcitationSourceModel

        public String getGenericExcitationSourceModel​(int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getGenericExcitationSourcePower

        public Power getGenericExcitationSourcePower​(int instrumentIndex,
                                                     int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourcePower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getGenericExcitationSourceSerialNumber

        public String getGenericExcitationSourceSerialNumber​(int instrumentIndex,
                                                             int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getImageAcquisitionDate

        public Timestamp getImageAcquisitionDate​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the AcquisitionDate property of Image.
        Specified by:
        getImageAcquisitionDate in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the AcquisitionDate property.
      • getImageAnnotationRef

        public String getImageAnnotationRef​(int imageIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Image.
        Specified by:
        getImageAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getImageDescription

        public String getImageDescription​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Image.
        Specified by:
        getImageDescription in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Description property.
      • getImageExperimentRef

        public String getImageExperimentRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimentRef property of Image.
        Specified by:
        getImageExperimentRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimentRef property.
      • getImageExperimenterGroupRef

        public String getImageExperimenterGroupRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Image.
        Specified by:
        getImageExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimenterGroupRef property.
      • getImageExperimenterRef

        public String getImageExperimenterRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Image.
        Specified by:
        getImageExperimenterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimenterRef property.
      • getImageID

        public String getImageID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Image.
        Specified by:
        getImageID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getImageInstrumentRef

        public String getImageInstrumentRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the InstrumentRef property of Image.
        Specified by:
        getImageInstrumentRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the InstrumentRef property.
      • getImageMicrobeamManipulationRef

        public String getImageMicrobeamManipulationRef​(int imageIndex,
                                                       int microbeamManipulationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the MicrobeamManipulationRef property of Image.
        Specified by:
        getImageMicrobeamManipulationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        microbeamManipulationRefIndex - MicrobeamManipulationRef index.
        Returns:
        the MicrobeamManipulationRef property.
      • getImageName

        public String getImageName​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Image.
        Specified by:
        getImageName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Name property.
      • getImageROIRef

        public String getImageROIRef​(int imageIndex,
                                     int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of Image.
        Specified by:
        getImageROIRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getImagingEnvironmentAirPressure

        public Pressure getImagingEnvironmentAirPressure​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the AirPressure property of ImagingEnvironment.
        Specified by:
        getImagingEnvironmentAirPressure in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the AirPressure property.
      • getInstrumentAnnotationRef

        public String getInstrumentAnnotationRef​(int instrumentIndex,
                                                 int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Instrument.
        Specified by:
        getInstrumentAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getInstrumentID

        public String getInstrumentID​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Instrument.
        Specified by:
        getInstrumentID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the ID property.
      • getLabelAnnotationRef

        public String getLabelAnnotationRef​(int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Label.
        Specified by:
        getLabelAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLabelFillColor

        public Color getLabelFillColor​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Label.
        Specified by:
        getLabelFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getLabelFillRule

        public FillRule getLabelFillRule​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Label.
        Specified by:
        getLabelFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getLabelFontFamily

        public FontFamily getLabelFontFamily​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Label.
        Specified by:
        getLabelFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getLabelFontSize

        public Length getLabelFontSize​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Label.
        Specified by:
        getLabelFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getLabelFontStyle

        public FontStyle getLabelFontStyle​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Label.
        Specified by:
        getLabelFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getLabelID

        public String getLabelID​(int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Label.
        Specified by:
        getLabelID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getLabelLocked

        public Boolean getLabelLocked​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Label.
        Specified by:
        getLabelLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getLabelStrokeColor

        public Color getLabelStrokeColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Label.
        Specified by:
        getLabelStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getLabelStrokeDashArray

        public String getLabelStrokeDashArray​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Label.
        Specified by:
        getLabelStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getLabelStrokeWidth

        public Length getLabelStrokeWidth​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Label.
        Specified by:
        getLabelStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getLabelText

        public String getLabelText​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Label.
        Specified by:
        getLabelText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getLabelTheC

        public NonNegativeInteger getLabelTheC​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Label.
        Specified by:
        getLabelTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getLabelTheT

        public NonNegativeInteger getLabelTheT​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Label.
        Specified by:
        getLabelTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getLabelTheZ

        public NonNegativeInteger getLabelTheZ​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Label.
        Specified by:
        getLabelTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getLabelTransform

        public AffineTransform getLabelTransform​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Label.
        Specified by:
        getLabelTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getLabelX

        public Double getLabelX​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Label.
        Specified by:
        getLabelX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getLabelY

        public Double getLabelY​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Label.
        Specified by:
        getLabelY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getLaserAnnotationRef

        public String getLaserAnnotationRef​(int instrumentIndex,
                                            int lightSourceIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Laser.
        Specified by:
        getLaserAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLaserFrequencyMultiplication

        public PositiveInteger getLaserFrequencyMultiplication​(int instrumentIndex,
                                                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the FrequencyMultiplication property of Laser.
        Specified by:
        getLaserFrequencyMultiplication in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the FrequencyMultiplication property.
      • getLaserID

        public String getLaserID​(int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Laser.
        Specified by:
        getLaserID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getLaserLaserMedium

        public LaserMedium getLaserLaserMedium​(int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LaserMedium property of Laser.
        Specified by:
        getLaserLaserMedium in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LaserMedium property.
      • getLaserLotNumber

        public String getLaserLotNumber​(int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Laser.
        Specified by:
        getLaserLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getLaserManufacturer

        public String getLaserManufacturer​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Laser.
        Specified by:
        getLaserManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getLaserModel

        public String getLaserModel​(int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Laser.
        Specified by:
        getLaserModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getLaserPockelCell

        public Boolean getLaserPockelCell​(int instrumentIndex,
                                          int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the PockelCell property of Laser.
        Specified by:
        getLaserPockelCell in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the PockelCell property.
      • getLaserPower

        public Power getLaserPower​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Laser.
        Specified by:
        getLaserPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getLaserPulse

        public Pulse getLaserPulse​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Pulse property of Laser.
        Specified by:
        getLaserPulse in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Pulse property.
      • getLaserPump

        public String getLaserPump​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Pump property of Laser.
        Specified by:
        getLaserPump in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Pump property.
      • getLaserRepetitionRate

        public Frequency getLaserRepetitionRate​(int instrumentIndex,
                                                int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the RepetitionRate property of Laser.
        Specified by:
        getLaserRepetitionRate in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the RepetitionRate property.
      • getLaserSerialNumber

        public String getLaserSerialNumber​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Laser.
        Specified by:
        getLaserSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getLaserTuneable

        public Boolean getLaserTuneable​(int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Tuneable property of Laser.
        Specified by:
        getLaserTuneable in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Tuneable property.
      • getLaserType

        public LaserType getLaserType​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Laser.
        Specified by:
        getLaserType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getLaserWavelength

        public Length getLaserWavelength​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of Laser.
        Specified by:
        getLaserWavelength in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Wavelength property.
      • getLightEmittingDiodeAnnotationRef

        public String getLightEmittingDiodeAnnotationRef​(int instrumentIndex,
                                                         int lightSourceIndex,
                                                         int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLightEmittingDiodeID

        public String getLightEmittingDiodeID​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getLightEmittingDiodeLotNumber

        public String getLightEmittingDiodeLotNumber​(int instrumentIndex,
                                                     int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getLightEmittingDiodeManufacturer

        public String getLightEmittingDiodeManufacturer​(int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getLightEmittingDiodeModel

        public String getLightEmittingDiodeModel​(int instrumentIndex,
                                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getLightEmittingDiodePower

        public Power getLightEmittingDiodePower​(int instrumentIndex,
                                                int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodePower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getLightEmittingDiodeSerialNumber

        public String getLightEmittingDiodeSerialNumber​(int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getLightPathAnnotationRef

        public String getLightPathAnnotationRef​(int imageIndex,
                                                int channelIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LightPath.
        Specified by:
        getLightPathAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLightPathDichroicRef

        public String getLightPathDichroicRef​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the DichroicRef property of LightPath.
        Specified by:
        getLightPathDichroicRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the DichroicRef property.
      • getLightPathEmissionFilterRef

        public String getLightPathEmissionFilterRef​(int imageIndex,
                                                    int channelIndex,
                                                    int emissionFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionFilterRef property of LightPath.
        Specified by:
        getLightPathEmissionFilterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        emissionFilterRefIndex - EmissionFilterRef index.
        Returns:
        the EmissionFilterRef property.
      • getLightPathExcitationFilterRef

        public String getLightPathExcitationFilterRef​(int imageIndex,
                                                      int channelIndex,
                                                      int excitationFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationFilterRef property of LightPath.
        Specified by:
        getLightPathExcitationFilterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        excitationFilterRefIndex - ExcitationFilterRef index.
        Returns:
        the ExcitationFilterRef property.
      • getChannelLightSourceSettingsAttenuation

        public PercentFraction getChannelLightSourceSettingsAttenuation​(int imageIndex,
                                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Attenuation property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsAttenuation in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Attenuation property.
      • getMicrobeamManipulationLightSourceSettingsAttenuation

        public PercentFraction getMicrobeamManipulationLightSourceSettingsAttenuation​(int experimentIndex,
                                                                                      int microbeamManipulationIndex,
                                                                                      int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the Attenuation property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the Attenuation property.
      • getChannelLightSourceSettingsID

        public String getChannelLightSourceSettingsID​(int imageIndex,
                                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getMicrobeamManipulationLightSourceSettingsID

        public String getMicrobeamManipulationLightSourceSettingsID​(int experimentIndex,
                                                                    int microbeamManipulationIndex,
                                                                    int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the ID property.
      • getChannelLightSourceSettingsWavelength

        public Length getChannelLightSourceSettingsWavelength​(int imageIndex,
                                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Wavelength property.
      • getMicrobeamManipulationLightSourceSettingsWavelength

        public Length getMicrobeamManipulationLightSourceSettingsWavelength​(int experimentIndex,
                                                                            int microbeamManipulationIndex,
                                                                            int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the Wavelength property.
      • getLineAnnotationRef

        public String getLineAnnotationRef​(int ROIIndex,
                                           int shapeIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Line.
        Specified by:
        getLineAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLineFillColor

        public Color getLineFillColor​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Line.
        Specified by:
        getLineFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getLineFillRule

        public FillRule getLineFillRule​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Line.
        Specified by:
        getLineFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getLineFontFamily

        public FontFamily getLineFontFamily​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Line.
        Specified by:
        getLineFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getLineFontSize

        public Length getLineFontSize​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Line.
        Specified by:
        getLineFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getLineFontStyle

        public FontStyle getLineFontStyle​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Line.
        Specified by:
        getLineFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getLineID

        public String getLineID​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Line.
        Specified by:
        getLineID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getLineLocked

        public Boolean getLineLocked​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Line.
        Specified by:
        getLineLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getLineMarkerEnd

        public Marker getLineMarkerEnd​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerEnd property of Line.
        Specified by:
        getLineMarkerEnd in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerEnd property.
      • getLineMarkerStart

        public Marker getLineMarkerStart​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerStart property of Line.
        Specified by:
        getLineMarkerStart in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerStart property.
      • getLineStrokeColor

        public Color getLineStrokeColor​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Line.
        Specified by:
        getLineStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getLineStrokeDashArray

        public String getLineStrokeDashArray​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Line.
        Specified by:
        getLineStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getLineStrokeWidth

        public Length getLineStrokeWidth​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Line.
        Specified by:
        getLineStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getLineText

        public String getLineText​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Line.
        Specified by:
        getLineText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getLineTheC

        public NonNegativeInteger getLineTheC​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Line.
        Specified by:
        getLineTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getLineTheT

        public NonNegativeInteger getLineTheT​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Line.
        Specified by:
        getLineTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getLineTheZ

        public NonNegativeInteger getLineTheZ​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Line.
        Specified by:
        getLineTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getLineTransform

        public AffineTransform getLineTransform​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Line.
        Specified by:
        getLineTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getLineX1

        public Double getLineX1​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X1 property of Line.
        Specified by:
        getLineX1 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X1 property.
      • getLineX2

        public Double getLineX2​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X2 property of Line.
        Specified by:
        getLineX2 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X2 property.
      • getLineY1

        public Double getLineY1​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y1 property of Line.
        Specified by:
        getLineY1 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y1 property.
      • getLineY2

        public Double getLineY2​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y2 property of Line.
        Specified by:
        getLineY2 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y2 property.
      • getListAnnotationAnnotationRef

        public String getListAnnotationAnnotationRef​(int listAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ListAnnotation.
        Specified by:
        getListAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getListAnnotationAnnotator

        public String getListAnnotationAnnotator​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of ListAnnotation.
        Specified by:
        getListAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Annotator property.
      • getListAnnotationDescription

        public String getListAnnotationDescription​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ListAnnotation.
        Specified by:
        getListAnnotationDescription in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Description property.
      • getListAnnotationID

        public String getListAnnotationID​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ListAnnotation.
        Specified by:
        getListAnnotationID in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the ID property.
      • getListAnnotationNamespace

        public String getListAnnotationNamespace​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of ListAnnotation.
        Specified by:
        getListAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Namespace property.
      • getLongAnnotationAnnotationRef

        public String getLongAnnotationAnnotationRef​(int longAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LongAnnotation.
        Specified by:
        getLongAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLongAnnotationAnnotator

        public String getLongAnnotationAnnotator​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of LongAnnotation.
        Specified by:
        getLongAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Annotator property.
      • getLongAnnotationDescription

        public String getLongAnnotationDescription​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of LongAnnotation.
        Specified by:
        getLongAnnotationDescription in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Description property.
      • getLongAnnotationID

        public String getLongAnnotationID​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LongAnnotation.
        Specified by:
        getLongAnnotationID in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the ID property.
      • getLongAnnotationNamespace

        public String getLongAnnotationNamespace​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of LongAnnotation.
        Specified by:
        getLongAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Namespace property.
      • getLongAnnotationValue

        public Long getLongAnnotationValue​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of LongAnnotation.
        Specified by:
        getLongAnnotationValue in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Value property.
      • getMapAnnotationAnnotationRef

        public String getMapAnnotationAnnotationRef​(int mapAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of MapAnnotation.
        Specified by:
        getMapAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getMapAnnotationAnnotator

        public String getMapAnnotationAnnotator​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of MapAnnotation.
        Specified by:
        getMapAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Annotator property.
      • getMapAnnotationDescription

        public String getMapAnnotationDescription​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of MapAnnotation.
        Specified by:
        getMapAnnotationDescription in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Description property.
      • getMapAnnotationID

        public String getMapAnnotationID​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of MapAnnotation.
        Specified by:
        getMapAnnotationID in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the ID property.
      • getMapAnnotationNamespace

        public String getMapAnnotationNamespace​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of MapAnnotation.
        Specified by:
        getMapAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Namespace property.
      • getMaskAnnotationRef

        public String getMaskAnnotationRef​(int ROIIndex,
                                           int shapeIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Mask.
        Specified by:
        getMaskAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getMaskFillColor

        public Color getMaskFillColor​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Mask.
        Specified by:
        getMaskFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getMaskFillRule

        public FillRule getMaskFillRule​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Mask.
        Specified by:
        getMaskFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getMaskFontFamily

        public FontFamily getMaskFontFamily​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Mask.
        Specified by:
        getMaskFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getMaskFontSize

        public Length getMaskFontSize​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Mask.
        Specified by:
        getMaskFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getMaskFontStyle

        public FontStyle getMaskFontStyle​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Mask.
        Specified by:
        getMaskFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getMaskHeight

        public Double getMaskHeight​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Height property of Mask.
        Specified by:
        getMaskHeight in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Height property.
      • getMaskID

        public String getMaskID​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Mask.
        Specified by:
        getMaskID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getMaskLocked

        public Boolean getMaskLocked​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Mask.
        Specified by:
        getMaskLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getMaskStrokeColor

        public Color getMaskStrokeColor​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Mask.
        Specified by:
        getMaskStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getMaskStrokeDashArray

        public String getMaskStrokeDashArray​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Mask.
        Specified by:
        getMaskStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getMaskStrokeWidth

        public Length getMaskStrokeWidth​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Mask.
        Specified by:
        getMaskStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getMaskText

        public String getMaskText​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Mask.
        Specified by:
        getMaskText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getMaskTheC

        public NonNegativeInteger getMaskTheC​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Mask.
        Specified by:
        getMaskTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getMaskTheT

        public NonNegativeInteger getMaskTheT​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Mask.
        Specified by:
        getMaskTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getMaskTheZ

        public NonNegativeInteger getMaskTheZ​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Mask.
        Specified by:
        getMaskTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getMaskTransform

        public AffineTransform getMaskTransform​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Mask.
        Specified by:
        getMaskTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getMaskWidth

        public Double getMaskWidth​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Width property of Mask.
        Specified by:
        getMaskWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Width property.
      • getMaskX

        public Double getMaskX​(int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Mask.
        Specified by:
        getMaskX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getMaskY

        public Double getMaskY​(int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Mask.
        Specified by:
        getMaskY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getMicrobeamManipulationDescription

        public String getMicrobeamManipulationDescription​(int experimentIndex,
                                                          int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationDescription in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the Description property.
      • getMicrobeamManipulationExperimenterRef

        public String getMicrobeamManipulationExperimenterRef​(int experimentIndex,
                                                              int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the ExperimenterRef property.
      • getMicrobeamManipulationID

        public String getMicrobeamManipulationID​(int experimentIndex,
                                                 int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the ID property.
      • getMicrobeamManipulationROIRef

        public String getMicrobeamManipulationROIRef​(int experimentIndex,
                                                     int microbeamManipulationIndex,
                                                     int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationROIRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getMicrobeamManipulationType

        public MicrobeamManipulationType getMicrobeamManipulationType​(int experimentIndex,
                                                                      int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationType in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the Type property.
      • getMicroscopeLotNumber

        public String getMicroscopeLotNumber​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Microscope.
        Specified by:
        getMicroscopeLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the LotNumber property.
      • getMicroscopeManufacturer

        public String getMicroscopeManufacturer​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Microscope.
        Specified by:
        getMicroscopeManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Manufacturer property.
      • getMicroscopeModel

        public String getMicroscopeModel​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Microscope.
        Specified by:
        getMicroscopeModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Model property.
      • getMicroscopeSerialNumber

        public String getMicroscopeSerialNumber​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Microscope.
        Specified by:
        getMicroscopeSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the SerialNumber property.
      • getMicroscopeType

        public MicroscopeType getMicroscopeType​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Microscope.
        Specified by:
        getMicroscopeType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Type property.
      • getObjectiveAnnotationRef

        public String getObjectiveAnnotationRef​(int instrumentIndex,
                                                int objectiveIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Objective.
        Specified by:
        getObjectiveAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getObjectiveCalibratedMagnification

        public Double getObjectiveCalibratedMagnification​(int instrumentIndex,
                                                          int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the CalibratedMagnification property of Objective.
        Specified by:
        getObjectiveCalibratedMagnification in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the CalibratedMagnification property.
      • getObjectiveCorrection

        public Correction getObjectiveCorrection​(int instrumentIndex,
                                                 int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Correction property of Objective.
        Specified by:
        getObjectiveCorrection in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Correction property.
      • getObjectiveID

        public String getObjectiveID​(int instrumentIndex,
                                     int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Objective.
        Specified by:
        getObjectiveID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the ID property.
      • getObjectiveImmersion

        public Immersion getObjectiveImmersion​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Immersion property of Objective.
        Specified by:
        getObjectiveImmersion in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Immersion property.
      • getObjectiveIris

        public Boolean getObjectiveIris​(int instrumentIndex,
                                        int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Iris property of Objective.
        Specified by:
        getObjectiveIris in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Iris property.
      • getObjectiveLensNA

        public Double getObjectiveLensNA​(int instrumentIndex,
                                         int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the LensNA property of Objective.
        Specified by:
        getObjectiveLensNA in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the LensNA property.
      • getObjectiveLotNumber

        public String getObjectiveLotNumber​(int instrumentIndex,
                                            int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Objective.
        Specified by:
        getObjectiveLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the LotNumber property.
      • getObjectiveManufacturer

        public String getObjectiveManufacturer​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Objective.
        Specified by:
        getObjectiveManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Manufacturer property.
      • getObjectiveModel

        public String getObjectiveModel​(int instrumentIndex,
                                        int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Objective.
        Specified by:
        getObjectiveModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Model property.
      • getObjectiveNominalMagnification

        public Double getObjectiveNominalMagnification​(int instrumentIndex,
                                                       int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the NominalMagnification property of Objective.
        Specified by:
        getObjectiveNominalMagnification in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the NominalMagnification property.
      • getObjectiveSerialNumber

        public String getObjectiveSerialNumber​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Objective.
        Specified by:
        getObjectiveSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the SerialNumber property.
      • getObjectiveWorkingDistance

        public Length getObjectiveWorkingDistance​(int instrumentIndex,
                                                  int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the WorkingDistance property of Objective.
        Specified by:
        getObjectiveWorkingDistance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the WorkingDistance property.
      • getObjectiveSettingsCorrectionCollar

        public Double getObjectiveSettingsCorrectionCollar​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the CorrectionCollar property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsCorrectionCollar in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the CorrectionCollar property.
      • getObjectiveSettingsID

        public String getObjectiveSettingsID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getObjectiveSettingsMedium

        public Medium getObjectiveSettingsMedium​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Medium property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsMedium in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Medium property.
      • getObjectiveSettingsRefractiveIndex

        public Double getObjectiveSettingsRefractiveIndex​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the RefractiveIndex property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsRefractiveIndex in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the RefractiveIndex property.
      • getPixelsBigEndian

        public Boolean getPixelsBigEndian​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of Pixels.
        Specified by:
        getPixelsBigEndian in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the BigEndian property.
      • getPixelsID

        public String getPixelsID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Pixels.
        Specified by:
        getPixelsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getPixelsInterleaved

        public Boolean getPixelsInterleaved​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Interleaved property of Pixels.
        Specified by:
        getPixelsInterleaved in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Interleaved property.
      • getPixelsPhysicalSizeX

        public Length getPixelsPhysicalSizeX​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeX property of Pixels.
        Specified by:
        getPixelsPhysicalSizeX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeX property.
      • getPixelsPhysicalSizeY

        public Length getPixelsPhysicalSizeY​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeY property of Pixels.
        Specified by:
        getPixelsPhysicalSizeY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeY property.
      • getPixelsPhysicalSizeZ

        public Length getPixelsPhysicalSizeZ​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeZ property of Pixels.
        Specified by:
        getPixelsPhysicalSizeZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeZ property.
      • getPixelsTimeIncrement

        public Time getPixelsTimeIncrement​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the TimeIncrement property of Pixels.
        Specified by:
        getPixelsTimeIncrement in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the TimeIncrement property.
      • getPixelsType

        public PixelType getPixelsType​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Pixels.
        Specified by:
        getPixelsType in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Type property.
      • getPlaneAnnotationRef

        public String getPlaneAnnotationRef​(int imageIndex,
                                            int planeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Plane.
        Specified by:
        getPlaneAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlaneDeltaT

        public Time getPlaneDeltaT​(int imageIndex,
                                   int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the DeltaT property of Plane.
        Specified by:
        getPlaneDeltaT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the DeltaT property.
      • getPlaneExposureTime

        public Time getPlaneExposureTime​(int imageIndex,
                                         int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExposureTime property of Plane.
        Specified by:
        getPlaneExposureTime in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the ExposureTime property.
      • getPlaneHashSHA1

        public String getPlaneHashSHA1​(int imageIndex,
                                       int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the HashSHA1 property of Plane.
        Specified by:
        getPlaneHashSHA1 in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the HashSHA1 property.
      • getPlanePositionX

        public Length getPlanePositionX​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionX property of Plane.
        Specified by:
        getPlanePositionX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionX property.
      • getPlanePositionY

        public Length getPlanePositionY​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionY property of Plane.
        Specified by:
        getPlanePositionY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionY property.
      • getPlanePositionZ

        public Length getPlanePositionZ​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionZ property of Plane.
        Specified by:
        getPlanePositionZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionZ property.
      • getPlaneTheC

        public NonNegativeInteger getPlaneTheC​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Plane.
        Specified by:
        getPlaneTheC in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheC property.
      • getPlaneTheT

        public NonNegativeInteger getPlaneTheT​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Plane.
        Specified by:
        getPlaneTheT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheT property.
      • getPlaneTheZ

        public NonNegativeInteger getPlaneTheZ​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Plane.
        Specified by:
        getPlaneTheZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheZ property.
      • getPlateAnnotationRef

        public String getPlateAnnotationRef​(int plateIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Plate.
        Specified by:
        getPlateAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlateDescription

        public String getPlateDescription​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Plate.
        Specified by:
        getPlateDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Description property.
      • getPlateExternalIdentifier

        public String getPlateExternalIdentifier​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalIdentifier property of Plate.
        Specified by:
        getPlateExternalIdentifier in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the ExternalIdentifier property.
      • getPlateID

        public String getPlateID​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Plate.
        Specified by:
        getPlateID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the ID property.
      • getPlateName

        public String getPlateName​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Plate.
        Specified by:
        getPlateName in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Name property.
      • getPlateStatus

        public String getPlateStatus​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Status property of Plate.
        Specified by:
        getPlateStatus in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Status property.
      • getPlateWellOriginX

        public Length getPlateWellOriginX​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellOriginX property of Plate.
        Specified by:
        getPlateWellOriginX in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the WellOriginX property.
      • getPlateWellOriginY

        public Length getPlateWellOriginY​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellOriginY property of Plate.
        Specified by:
        getPlateWellOriginY in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the WellOriginY property.
      • getPlateAcquisitionAnnotationRef

        public String getPlateAcquisitionAnnotationRef​(int plateIndex,
                                                       int plateAcquisitionIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlateAcquisitionDescription

        public String getPlateAcquisitionDescription​(int plateIndex,
                                                     int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the Description property.
      • getPlateAcquisitionEndTime

        public Timestamp getPlateAcquisitionEndTime​(int plateIndex,
                                                    int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the EndTime property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionEndTime in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the EndTime property.
      • getPlateAcquisitionID

        public String getPlateAcquisitionID​(int plateIndex,
                                            int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the ID property.
      • getPlateAcquisitionMaximumFieldCount

        public PositiveInteger getPlateAcquisitionMaximumFieldCount​(int plateIndex,
                                                                    int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the MaximumFieldCount property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionMaximumFieldCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the MaximumFieldCount property.
      • getPlateAcquisitionName

        public String getPlateAcquisitionName​(int plateIndex,
                                              int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionName in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the Name property.
      • getPlateAcquisitionStartTime

        public Timestamp getPlateAcquisitionStartTime​(int plateIndex,
                                                      int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the StartTime property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionStartTime in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the StartTime property.
      • getPlateAcquisitionWellSampleRef

        public String getPlateAcquisitionWellSampleRef​(int plateIndex,
                                                       int plateAcquisitionIndex,
                                                       int wellSampleRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellSampleRef property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionWellSampleRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        wellSampleRefIndex - WellSampleRef index.
        Returns:
        the WellSampleRef property.
      • getPointAnnotationRef

        public String getPointAnnotationRef​(int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Point.
        Specified by:
        getPointAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPointFillColor

        public Color getPointFillColor​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Point.
        Specified by:
        getPointFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPointFillRule

        public FillRule getPointFillRule​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Point.
        Specified by:
        getPointFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPointFontFamily

        public FontFamily getPointFontFamily​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Point.
        Specified by:
        getPointFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPointFontSize

        public Length getPointFontSize​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Point.
        Specified by:
        getPointFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPointFontStyle

        public FontStyle getPointFontStyle​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Point.
        Specified by:
        getPointFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPointID

        public String getPointID​(int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Point.
        Specified by:
        getPointID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPointLocked

        public Boolean getPointLocked​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Point.
        Specified by:
        getPointLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPointStrokeColor

        public Color getPointStrokeColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Point.
        Specified by:
        getPointStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPointStrokeDashArray

        public String getPointStrokeDashArray​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Point.
        Specified by:
        getPointStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPointStrokeWidth

        public Length getPointStrokeWidth​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Point.
        Specified by:
        getPointStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPointText

        public String getPointText​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Point.
        Specified by:
        getPointText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPointTheC

        public NonNegativeInteger getPointTheC​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Point.
        Specified by:
        getPointTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPointTheT

        public NonNegativeInteger getPointTheT​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Point.
        Specified by:
        getPointTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPointTheZ

        public NonNegativeInteger getPointTheZ​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Point.
        Specified by:
        getPointTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPointTransform

        public AffineTransform getPointTransform​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Point.
        Specified by:
        getPointTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getPointX

        public Double getPointX​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Point.
        Specified by:
        getPointX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getPointY

        public Double getPointY​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Point.
        Specified by:
        getPointY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getPolygonAnnotationRef

        public String getPolygonAnnotationRef​(int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Polygon.
        Specified by:
        getPolygonAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPolygonFillColor

        public Color getPolygonFillColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Polygon.
        Specified by:
        getPolygonFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPolygonFillRule

        public FillRule getPolygonFillRule​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Polygon.
        Specified by:
        getPolygonFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPolygonFontFamily

        public FontFamily getPolygonFontFamily​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Polygon.
        Specified by:
        getPolygonFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPolygonFontSize

        public Length getPolygonFontSize​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Polygon.
        Specified by:
        getPolygonFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPolygonFontStyle

        public FontStyle getPolygonFontStyle​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Polygon.
        Specified by:
        getPolygonFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPolygonID

        public String getPolygonID​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Polygon.
        Specified by:
        getPolygonID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPolygonLocked

        public Boolean getPolygonLocked​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Polygon.
        Specified by:
        getPolygonLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPolygonPoints

        public String getPolygonPoints​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Points property of Polygon.
        Specified by:
        getPolygonPoints in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Points property.
      • getPolygonStrokeColor

        public Color getPolygonStrokeColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Polygon.
        Specified by:
        getPolygonStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPolygonStrokeDashArray

        public String getPolygonStrokeDashArray​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Polygon.
        Specified by:
        getPolygonStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPolygonStrokeWidth

        public Length getPolygonStrokeWidth​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Polygon.
        Specified by:
        getPolygonStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPolygonText

        public String getPolygonText​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Polygon.
        Specified by:
        getPolygonText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPolygonTheC

        public NonNegativeInteger getPolygonTheC​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Polygon.
        Specified by:
        getPolygonTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPolygonTheT

        public NonNegativeInteger getPolygonTheT​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Polygon.
        Specified by:
        getPolygonTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPolygonTheZ

        public NonNegativeInteger getPolygonTheZ​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Polygon.
        Specified by:
        getPolygonTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPolygonTransform

        public AffineTransform getPolygonTransform​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Polygon.
        Specified by:
        getPolygonTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getPolylineAnnotationRef

        public String getPolylineAnnotationRef​(int ROIIndex,
                                               int shapeIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Polyline.
        Specified by:
        getPolylineAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPolylineFillColor

        public Color getPolylineFillColor​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Polyline.
        Specified by:
        getPolylineFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPolylineFillRule

        public FillRule getPolylineFillRule​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Polyline.
        Specified by:
        getPolylineFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPolylineFontFamily

        public FontFamily getPolylineFontFamily​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Polyline.
        Specified by:
        getPolylineFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPolylineFontSize

        public Length getPolylineFontSize​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Polyline.
        Specified by:
        getPolylineFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPolylineFontStyle

        public FontStyle getPolylineFontStyle​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Polyline.
        Specified by:
        getPolylineFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPolylineID

        public String getPolylineID​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Polyline.
        Specified by:
        getPolylineID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPolylineLocked

        public Boolean getPolylineLocked​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Polyline.
        Specified by:
        getPolylineLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPolylineMarkerEnd

        public Marker getPolylineMarkerEnd​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerEnd property of Polyline.
        Specified by:
        getPolylineMarkerEnd in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerEnd property.
      • getPolylineMarkerStart

        public Marker getPolylineMarkerStart​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerStart property of Polyline.
        Specified by:
        getPolylineMarkerStart in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerStart property.
      • getPolylinePoints

        public String getPolylinePoints​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Points property of Polyline.
        Specified by:
        getPolylinePoints in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Points property.
      • getPolylineStrokeColor

        public Color getPolylineStrokeColor​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Polyline.
        Specified by:
        getPolylineStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPolylineStrokeDashArray

        public String getPolylineStrokeDashArray​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Polyline.
        Specified by:
        getPolylineStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPolylineStrokeWidth

        public Length getPolylineStrokeWidth​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Polyline.
        Specified by:
        getPolylineStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPolylineText

        public String getPolylineText​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Polyline.
        Specified by:
        getPolylineText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPolylineTheC

        public NonNegativeInteger getPolylineTheC​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Polyline.
        Specified by:
        getPolylineTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPolylineTheT

        public NonNegativeInteger getPolylineTheT​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Polyline.
        Specified by:
        getPolylineTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPolylineTheZ

        public NonNegativeInteger getPolylineTheZ​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Polyline.
        Specified by:
        getPolylineTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPolylineTransform

        public AffineTransform getPolylineTransform​(int ROIIndex,
                                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Polyline.
        Specified by:
        getPolylineTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getProjectAnnotationRef

        public String getProjectAnnotationRef​(int projectIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Project.
        Specified by:
        getProjectAnnotationRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getProjectDatasetRef

        public String getProjectDatasetRef​(int projectIndex,
                                           int datasetRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the DatasetRef property of Project.
        Specified by:
        getProjectDatasetRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        datasetRefIndex - DatasetRef index.
        Returns:
        the DatasetRef property.
      • getProjectDescription

        public String getProjectDescription​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Project.
        Specified by:
        getProjectDescription in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the Description property.
      • getProjectExperimenterGroupRef

        public String getProjectExperimenterGroupRef​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Project.
        Specified by:
        getProjectExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ExperimenterGroupRef property.
      • getProjectExperimenterRef

        public String getProjectExperimenterRef​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Project.
        Specified by:
        getProjectExperimenterRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ExperimenterRef property.
      • getProjectID

        public String getProjectID​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Project.
        Specified by:
        getProjectID in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ID property.
      • getProjectName

        public String getProjectName​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Project.
        Specified by:
        getProjectName in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the Name property.
      • getROIAnnotationRef

        public String getROIAnnotationRef​(int ROIIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ROI.
        Specified by:
        getROIAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getROIDescription

        public String getROIDescription​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ROI.
        Specified by:
        getROIDescription in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the Description property.
      • getROIID

        public String getROIID​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ROI.
        Specified by:
        getROIID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the ID property.
      • getROIName

        public String getROIName​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of ROI.
        Specified by:
        getROIName in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the Name property.
      • getReagentAnnotationRef

        public String getReagentAnnotationRef​(int screenIndex,
                                              int reagentIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Reagent.
        Specified by:
        getReagentAnnotationRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getReagentDescription

        public String getReagentDescription​(int screenIndex,
                                            int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Reagent.
        Specified by:
        getReagentDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the Description property.
      • getReagentID

        public String getReagentID​(int screenIndex,
                                   int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Reagent.
        Specified by:
        getReagentID in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the ID property.
      • getReagentName

        public String getReagentName​(int screenIndex,
                                     int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Reagent.
        Specified by:
        getReagentName in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the Name property.
      • getReagentReagentIdentifier

        public String getReagentReagentIdentifier​(int screenIndex,
                                                  int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentIdentifier property of Reagent.
        Specified by:
        getReagentReagentIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the ReagentIdentifier property.
      • getRectangleAnnotationRef

        public String getRectangleAnnotationRef​(int ROIIndex,
                                                int shapeIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Rectangle.
        Specified by:
        getRectangleAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getRectangleFillColor

        public Color getRectangleFillColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Rectangle.
        Specified by:
        getRectangleFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getRectangleFillRule

        public FillRule getRectangleFillRule​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Rectangle.
        Specified by:
        getRectangleFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getRectangleFontFamily

        public FontFamily getRectangleFontFamily​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Rectangle.
        Specified by:
        getRectangleFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getRectangleFontSize

        public Length getRectangleFontSize​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Rectangle.
        Specified by:
        getRectangleFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getRectangleFontStyle

        public FontStyle getRectangleFontStyle​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Rectangle.
        Specified by:
        getRectangleFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getRectangleHeight

        public Double getRectangleHeight​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Height property of Rectangle.
        Specified by:
        getRectangleHeight in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Height property.
      • getRectangleID

        public String getRectangleID​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Rectangle.
        Specified by:
        getRectangleID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getRectangleLocked

        public Boolean getRectangleLocked​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Rectangle.
        Specified by:
        getRectangleLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getRectangleStrokeColor

        public Color getRectangleStrokeColor​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Rectangle.
        Specified by:
        getRectangleStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getRectangleStrokeDashArray

        public String getRectangleStrokeDashArray​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Rectangle.
        Specified by:
        getRectangleStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getRectangleStrokeWidth

        public Length getRectangleStrokeWidth​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Rectangle.
        Specified by:
        getRectangleStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getRectangleText

        public String getRectangleText​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Rectangle.
        Specified by:
        getRectangleText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getRectangleTheC

        public NonNegativeInteger getRectangleTheC​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Rectangle.
        Specified by:
        getRectangleTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getRectangleTheT

        public NonNegativeInteger getRectangleTheT​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Rectangle.
        Specified by:
        getRectangleTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getRectangleTheZ

        public NonNegativeInteger getRectangleTheZ​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Rectangle.
        Specified by:
        getRectangleTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getRectangleTransform

        public AffineTransform getRectangleTransform​(int ROIIndex,
                                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Rectangle.
        Specified by:
        getRectangleTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getRectangleWidth

        public Double getRectangleWidth​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Width property of Rectangle.
        Specified by:
        getRectangleWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Width property.
      • getRectangleX

        public Double getRectangleX​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Rectangle.
        Specified by:
        getRectangleX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getRectangleY

        public Double getRectangleY​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Rectangle.
        Specified by:
        getRectangleY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getScreenAnnotationRef

        public String getScreenAnnotationRef​(int screenIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Screen.
        Specified by:
        getScreenAnnotationRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getScreenDescription

        public String getScreenDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Screen.
        Specified by:
        getScreenDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Description property.
      • getScreenID

        public String getScreenID​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Screen.
        Specified by:
        getScreenID in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ID property.
      • getScreenName

        public String getScreenName​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Screen.
        Specified by:
        getScreenName in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Name property.
      • getScreenPlateRef

        public String getScreenPlateRef​(int screenIndex,
                                        int plateRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the PlateRef property of Screen.
        Specified by:
        getScreenPlateRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        plateRefIndex - PlateRef index.
        Returns:
        the PlateRef property.
      • getScreenProtocolDescription

        public String getScreenProtocolDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ProtocolDescription property of Screen.
        Specified by:
        getScreenProtocolDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ProtocolDescription property.
      • getScreenProtocolIdentifier

        public String getScreenProtocolIdentifier​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ProtocolIdentifier property of Screen.
        Specified by:
        getScreenProtocolIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ProtocolIdentifier property.
      • getScreenReagentSetDescription

        public String getScreenReagentSetDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentSetDescription property of Screen.
        Specified by:
        getScreenReagentSetDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ReagentSetDescription property.
      • getScreenReagentSetIdentifier

        public String getScreenReagentSetIdentifier​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentSetIdentifier property of Screen.
        Specified by:
        getScreenReagentSetIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ReagentSetIdentifier property.
      • getScreenType

        public String getScreenType​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Screen.
        Specified by:
        getScreenType in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Type property.
      • getStageLabelName

        public String getStageLabelName​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of StageLabel.
        Specified by:
        getStageLabelName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Name property.
      • getStageLabelX

        public Length getStageLabelX​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of StageLabel.
        Specified by:
        getStageLabelX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the X property.
      • getStageLabelY

        public Length getStageLabelY​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of StageLabel.
        Specified by:
        getStageLabelY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Y property.
      • getStageLabelZ

        public Length getStageLabelZ​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Z property of StageLabel.
        Specified by:
        getStageLabelZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Z property.
      • getTagAnnotationAnnotationRef

        public String getTagAnnotationAnnotationRef​(int tagAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TagAnnotation.
        Specified by:
        getTagAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTagAnnotationAnnotator

        public String getTagAnnotationAnnotator​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TagAnnotation.
        Specified by:
        getTagAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Annotator property.
      • getTagAnnotationDescription

        public String getTagAnnotationDescription​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TagAnnotation.
        Specified by:
        getTagAnnotationDescription in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Description property.
      • getTagAnnotationID

        public String getTagAnnotationID​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TagAnnotation.
        Specified by:
        getTagAnnotationID in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the ID property.
      • getTagAnnotationNamespace

        public String getTagAnnotationNamespace​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TagAnnotation.
        Specified by:
        getTagAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Namespace property.
      • getTagAnnotationValue

        public String getTagAnnotationValue​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TagAnnotation.
        Specified by:
        getTagAnnotationValue in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Value property.
      • getTermAnnotationAnnotationRef

        public String getTermAnnotationAnnotationRef​(int termAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TermAnnotation.
        Specified by:
        getTermAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTermAnnotationAnnotator

        public String getTermAnnotationAnnotator​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TermAnnotation.
        Specified by:
        getTermAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Annotator property.
      • getTermAnnotationDescription

        public String getTermAnnotationDescription​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TermAnnotation.
        Specified by:
        getTermAnnotationDescription in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Description property.
      • getTermAnnotationID

        public String getTermAnnotationID​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TermAnnotation.
        Specified by:
        getTermAnnotationID in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the ID property.
      • getTermAnnotationNamespace

        public String getTermAnnotationNamespace​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TermAnnotation.
        Specified by:
        getTermAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Namespace property.
      • getTermAnnotationValue

        public String getTermAnnotationValue​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TermAnnotation.
        Specified by:
        getTermAnnotationValue in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Value property.
      • getTiffDataFirstC

        public NonNegativeInteger getTiffDataFirstC​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstC property of TiffData.
        Specified by:
        getTiffDataFirstC in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstC property.
      • getTiffDataFirstT

        public NonNegativeInteger getTiffDataFirstT​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstT property of TiffData.
        Specified by:
        getTiffDataFirstT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstT property.
      • getTiffDataFirstZ

        public NonNegativeInteger getTiffDataFirstZ​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstZ property of TiffData.
        Specified by:
        getTiffDataFirstZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstZ property.
      • getTiffDataIFD

        public NonNegativeInteger getTiffDataIFD​(int imageIndex,
                                                 int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the IFD property of TiffData.
        Specified by:
        getTiffDataIFD in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the IFD property.
      • getTiffDataPlaneCount

        public NonNegativeInteger getTiffDataPlaneCount​(int imageIndex,
                                                        int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the PlaneCount property of TiffData.
        Specified by:
        getTiffDataPlaneCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the PlaneCount property.
      • getTimestampAnnotationAnnotationRef

        public String getTimestampAnnotationAnnotationRef​(int timestampAnnotationIndex,
                                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTimestampAnnotationAnnotator

        public String getTimestampAnnotationAnnotator​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Annotator property.
      • getTimestampAnnotationDescription

        public String getTimestampAnnotationDescription​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationDescription in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Description property.
      • getTimestampAnnotationID

        public String getTimestampAnnotationID​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationID in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the ID property.
      • getTimestampAnnotationNamespace

        public String getTimestampAnnotationNamespace​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Namespace property.
      • getTimestampAnnotationValue

        public Timestamp getTimestampAnnotationValue​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationValue in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Value property.
      • getTransmittanceRangeCutIn

        public Length getTransmittanceRangeCutIn​(int instrumentIndex,
                                                 int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutIn property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutIn in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutIn property.
      • getTransmittanceRangeCutInTolerance

        public Length getTransmittanceRangeCutInTolerance​(int instrumentIndex,
                                                          int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutInTolerance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutInTolerance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutInTolerance property.
      • getTransmittanceRangeCutOut

        public Length getTransmittanceRangeCutOut​(int instrumentIndex,
                                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutOut property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutOut in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutOut property.
      • getTransmittanceRangeCutOutTolerance

        public Length getTransmittanceRangeCutOutTolerance​(int instrumentIndex,
                                                           int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutOutTolerance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutOutTolerance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutOutTolerance property.
      • getTransmittanceRangeTransmittance

        public PercentFraction getTransmittanceRangeTransmittance​(int instrumentIndex,
                                                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transmittance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeTransmittance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Transmittance property.
      • getUUIDFileName

        public String getUUIDFileName​(int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FileName property of UUID.
        Specified by:
        getUUIDFileName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FileName property.
      • getWellAnnotationRef

        public String getWellAnnotationRef​(int plateIndex,
                                           int wellIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Well.
        Specified by:
        getWellAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getWellColor

        public Color getWellColor​(int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Color property of Well.
        Specified by:
        getWellColor in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Color property.
      • getWellColumn

        public NonNegativeInteger getWellColumn​(int plateIndex,
                                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Column property of Well.
        Specified by:
        getWellColumn in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Column property.
      • getWellExternalDescription

        public String getWellExternalDescription​(int plateIndex,
                                                 int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalDescription property of Well.
        Specified by:
        getWellExternalDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ExternalDescription property.
      • getWellExternalIdentifier

        public String getWellExternalIdentifier​(int plateIndex,
                                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalIdentifier property of Well.
        Specified by:
        getWellExternalIdentifier in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ExternalIdentifier property.
      • getWellID

        public String getWellID​(int plateIndex,
                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Well.
        Specified by:
        getWellID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ID property.
      • getWellReagentRef

        public String getWellReagentRef​(int plateIndex,
                                        int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentRef property of Well.
        Specified by:
        getWellReagentRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ReagentRef property.
      • getWellRow

        public NonNegativeInteger getWellRow​(int plateIndex,
                                             int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Row property of Well.
        Specified by:
        getWellRow in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Row property.
      • getWellType

        public String getWellType​(int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Well.
        Specified by:
        getWellType in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Type property.
      • getWellSampleID

        public String getWellSampleID​(int plateIndex,
                                      int wellIndex,
                                      int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of WellSample.
        Specified by:
        getWellSampleID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the ID property.
      • getWellSampleImageRef

        public String getWellSampleImageRef​(int plateIndex,
                                            int wellIndex,
                                            int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of WellSample.
        Specified by:
        getWellSampleImageRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the ImageRef property.
      • getWellSampleIndex

        public NonNegativeInteger getWellSampleIndex​(int plateIndex,
                                                     int wellIndex,
                                                     int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the Index property of WellSample.
        Specified by:
        getWellSampleIndex in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the Index property.
      • getWellSamplePositionX

        public Length getWellSamplePositionX​(int plateIndex,
                                             int wellIndex,
                                             int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionX property of WellSample.
        Specified by:
        getWellSamplePositionX in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the PositionX property.
      • getWellSamplePositionY

        public Length getWellSamplePositionY​(int plateIndex,
                                             int wellIndex,
                                             int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionY property of WellSample.
        Specified by:
        getWellSamplePositionY in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the PositionY property.
      • getWellSampleTimepoint

        public Timestamp getWellSampleTimepoint​(int plateIndex,
                                                int wellIndex,
                                                int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the Timepoint property of WellSample.
        Specified by:
        getWellSampleTimepoint in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the Timepoint property.
      • getXMLAnnotationAnnotationRef

        public String getXMLAnnotationAnnotationRef​(int XMLAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of XMLAnnotation.
        Specified by:
        getXMLAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getXMLAnnotationAnnotator

        public String getXMLAnnotationAnnotator​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of XMLAnnotation.
        Specified by:
        getXMLAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Annotator property.
      • getXMLAnnotationDescription

        public String getXMLAnnotationDescription​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of XMLAnnotation.
        Specified by:
        getXMLAnnotationDescription in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Description property.
      • getXMLAnnotationID

        public String getXMLAnnotationID​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of XMLAnnotation.
        Specified by:
        getXMLAnnotationID in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the ID property.
      • getXMLAnnotationNamespace

        public String getXMLAnnotationNamespace​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of XMLAnnotation.
        Specified by:
        getXMLAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Namespace property.
      • getXMLAnnotationValue

        public String getXMLAnnotationValue​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of XMLAnnotation.
        Specified by:
        getXMLAnnotationValue in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Value property.
      • setUUID

        public void setUUID​(String uuid)
        Sets the UUID associated with this collection of metadata.
        Specified by:
        setUUID in interface MetadataStore
        Parameters:
        uuid - the UUID to set.
      • setCreator

        public void setCreator​(String creator)
        Sets the Creator associated with this collection of metadata.
        Specified by:
        setCreator in interface MetadataStore
        Parameters:
        creator - the Creator to set.
      • setMapAnnotationValue

        public void setMapAnnotationValue​(List<MapPair> value,
                                          int mapAnnotationIndex)
        Sets the Map value associated with this annotation
        Specified by:
        setMapAnnotationValue in interface MetadataStore
        Parameters:
        value - the MapAnnotation values to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setGenericExcitationSourceMap

        public void setGenericExcitationSourceMap​(List<MapPair> map,
                                                  int instrumentIndex,
                                                  int lightSourceIndex)
        Sets the Map value associated with this generic light source
        Specified by:
        setGenericExcitationSourceMap in interface MetadataStore
        Parameters:
        map - the MapAnnotation values to set.
        instrumentIndex - the Instrument index.
      • setImagingEnvironmentMap

        public void setImagingEnvironmentMap​(List<MapPair> map,
                                             int imageIndex)
        Sets the Map value associated with this imaging environment
        Specified by:
        setImagingEnvironmentMap in interface MetadataStore
        Parameters:
        map - the MapAnnotation values to set.
        imageIndex - the Image index.
      • setArcAnnotationRef

        public void setArcAnnotationRef​(String annotation,
                                        int instrumentIndex,
                                        int lightSourceIndex,
                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Arc.
        Specified by:
        setArcAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setArcID

        public void setArcID​(String id,
                             int instrumentIndex,
                             int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Arc.
        Specified by:
        setArcID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcLotNumber

        public void setArcLotNumber​(String lotNumber,
                                    int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Arc.
        Specified by:
        setArcLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcManufacturer

        public void setArcManufacturer​(String manufacturer,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Arc.
        Specified by:
        setArcManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcModel

        public void setArcModel​(String model,
                                int instrumentIndex,
                                int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Arc.
        Specified by:
        setArcModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcPower

        public void setArcPower​(Power power,
                                int instrumentIndex,
                                int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Arc.
        Specified by:
        setArcPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcSerialNumber

        public void setArcSerialNumber​(String serialNumber,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Arc.
        Specified by:
        setArcSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcType

        public void setArcType​(ArcType type,
                               int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Arc.
        Specified by:
        setArcType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setBinaryFileBinData

        public void setBinaryFileBinData​(byte[] base64Binary,
                                         int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setBinaryFileBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinData

        public void setMaskBinData​(byte[] base64Binary,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setMaskBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinData

        public void setPixelsBinData​(byte[] base64Binary,
                                     int imageIndex,
                                     int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setPixelsBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataBigEndian

        public void setBinaryFileBinDataBigEndian​(Boolean bigEndian,
                                                  int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setBinaryFileBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataBigEndian

        public void setMaskBinDataBigEndian​(Boolean bigEndian,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setMaskBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataBigEndian

        public void setPixelsBinDataBigEndian​(Boolean bigEndian,
                                              int imageIndex,
                                              int binDataIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setPixelsBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataCompression

        public void setBinaryFileBinDataCompression​(Compression compression,
                                                    int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setBinaryFileBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataCompression

        public void setMaskBinDataCompression​(Compression compression,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setMaskBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataCompression

        public void setPixelsBinDataCompression​(Compression compression,
                                                int imageIndex,
                                                int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setPixelsBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataLength

        public void setBinaryFileBinDataLength​(NonNegativeLong length,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setBinaryFileBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataLength

        public void setMaskBinDataLength​(NonNegativeLong length,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setMaskBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataLength

        public void setPixelsBinDataLength​(NonNegativeLong length,
                                           int imageIndex,
                                           int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setPixelsBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileFileName

        public void setBinaryFileFileName​(String fileName,
                                          int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the FileName property of BinaryFile.
        Specified by:
        setBinaryFileFileName in interface MetadataStore
        Parameters:
        fileName - FileName to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryFileMIMEType

        public void setBinaryFileMIMEType​(String mimeType,
                                          int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the MIMEType property of BinaryFile.
        Specified by:
        setBinaryFileMIMEType in interface MetadataStore
        Parameters:
        mimeType - MIMEType to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryFileSize

        public void setBinaryFileSize​(NonNegativeLong size,
                                      int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Size property of BinaryFile.
        Specified by:
        setBinaryFileSize in interface MetadataStore
        Parameters:
        size - Size to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryOnlyMetadataFile

        public void setBinaryOnlyMetadataFile​(String metadataFile)
        Description copied from interface: MetadataStore
        Set the MetadataFile property of BinaryOnly.
        Specified by:
        setBinaryOnlyMetadataFile in interface MetadataStore
        Parameters:
        metadataFile - MetadataFile to set.
      • setBinaryOnlyUUID

        public void setBinaryOnlyUUID​(String uuid)
        Description copied from interface: MetadataStore
        Set the UUID property of BinaryOnly.
        Specified by:
        setBinaryOnlyUUID in interface MetadataStore
        Parameters:
        uuid - UUID to set.
      • setBooleanAnnotationAnnotationRef

        public void setBooleanAnnotationAnnotationRef​(String annotation,
                                                      int booleanAnnotationIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setBooleanAnnotationAnnotator

        public void setBooleanAnnotationAnnotator​(String annotator,
                                                  int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationDescription

        public void setBooleanAnnotationDescription​(String description,
                                                    int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationID

        public void setBooleanAnnotationID​(String id,
                                           int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationNamespace

        public void setBooleanAnnotationNamespace​(String namespace,
                                                  int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationValue

        public void setBooleanAnnotationValue​(Boolean value,
                                              int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setChannelAcquisitionMode

        public void setChannelAcquisitionMode​(AcquisitionMode acquisitionMode,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the AcquisitionMode property of Channel.
        Specified by:
        setChannelAcquisitionMode in interface MetadataStore
        Parameters:
        acquisitionMode - AcquisitionMode to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelAnnotationRef

        public void setChannelAnnotationRef​(String annotation,
                                            int imageIndex,
                                            int channelIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Channel.
        Specified by:
        setChannelAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index (unused).
      • setChannelColor

        public void setChannelColor​(Color color,
                                    int imageIndex,
                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the Color property of Channel.
        Specified by:
        setChannelColor in interface MetadataStore
        Parameters:
        color - Color to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelContrastMethod

        public void setChannelContrastMethod​(ContrastMethod contrastMethod,
                                             int imageIndex,
                                             int channelIndex)
        Description copied from interface: MetadataStore
        Set the ContrastMethod property of Channel.
        Specified by:
        setChannelContrastMethod in interface MetadataStore
        Parameters:
        contrastMethod - ContrastMethod to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelEmissionWavelength

        public void setChannelEmissionWavelength​(Length emissionWavelength,
                                                 int imageIndex,
                                                 int channelIndex)
        Description copied from interface: MetadataStore
        Set the EmissionWavelength property of Channel.
        Specified by:
        setChannelEmissionWavelength in interface MetadataStore
        Parameters:
        emissionWavelength - EmissionWavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelExcitationWavelength

        public void setChannelExcitationWavelength​(Length excitationWavelength,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationWavelength property of Channel.
        Specified by:
        setChannelExcitationWavelength in interface MetadataStore
        Parameters:
        excitationWavelength - ExcitationWavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelFilterSetRef

        public void setChannelFilterSetRef​(String filterSet,
                                           int imageIndex,
                                           int channelIndex)
        Description copied from interface: MetadataStore
        Set the FilterSetRef property of Channel.
        Specified by:
        setChannelFilterSetRef in interface MetadataStore
        Parameters:
        filterSet - FilterSetRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelFluor

        public void setChannelFluor​(String fluor,
                                    int imageIndex,
                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the Fluor property of Channel.
        Specified by:
        setChannelFluor in interface MetadataStore
        Parameters:
        fluor - Fluor to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelID

        public void setChannelID​(String id,
                                 int imageIndex,
                                 int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Channel.
        Specified by:
        setChannelID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelIlluminationType

        public void setChannelIlluminationType​(IlluminationType illuminationType,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the IlluminationType property of Channel.
        Specified by:
        setChannelIlluminationType in interface MetadataStore
        Parameters:
        illuminationType - IlluminationType to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelNDFilter

        public void setChannelNDFilter​(Double ndFilter,
                                       int imageIndex,
                                       int channelIndex)
        Description copied from interface: MetadataStore
        Set the NDFilter property of Channel.
        Specified by:
        setChannelNDFilter in interface MetadataStore
        Parameters:
        ndFilter - NDFilter to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelName

        public void setChannelName​(String name,
                                   int imageIndex,
                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Channel.
        Specified by:
        setChannelName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelPinholeSize

        public void setChannelPinholeSize​(Length pinholeSize,
                                          int imageIndex,
                                          int channelIndex)
        Description copied from interface: MetadataStore
        Set the PinholeSize property of Channel.
        Specified by:
        setChannelPinholeSize in interface MetadataStore
        Parameters:
        pinholeSize - PinholeSize to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelPockelCellSetting

        public void setChannelPockelCellSetting​(Integer pockelCellSetting,
                                                int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataStore
        Set the PockelCellSetting property of Channel.
        Specified by:
        setChannelPockelCellSetting in interface MetadataStore
        Parameters:
        pockelCellSetting - PockelCellSetting to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelSamplesPerPixel

        public void setChannelSamplesPerPixel​(PositiveInteger samplesPerPixel,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the SamplesPerPixel property of Channel.
        Specified by:
        setChannelSamplesPerPixel in interface MetadataStore
        Parameters:
        samplesPerPixel - SamplesPerPixel to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setCommentAnnotationAnnotationRef

        public void setCommentAnnotationAnnotationRef​(String annotation,
                                                      int commentAnnotationIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of CommentAnnotation.
        Specified by:
        setCommentAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        commentAnnotationIndex - the CommentAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setCommentAnnotationAnnotator

        public void setCommentAnnotationAnnotator​(String annotator,
                                                  int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of CommentAnnotation.
        Specified by:
        setCommentAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationDescription

        public void setCommentAnnotationDescription​(String description,
                                                    int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of CommentAnnotation.
        Specified by:
        setCommentAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationID

        public void setCommentAnnotationID​(String id,
                                           int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of CommentAnnotation.
        Specified by:
        setCommentAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationNamespace

        public void setCommentAnnotationNamespace​(String namespace,
                                                  int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of CommentAnnotation.
        Specified by:
        setCommentAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationValue

        public void setCommentAnnotationValue​(String value,
                                              int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of CommentAnnotation.
        Specified by:
        setCommentAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setDatasetAnnotationRef

        public void setDatasetAnnotationRef​(String annotation,
                                            int datasetIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Dataset.
        Specified by:
        setDatasetAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        datasetIndex - the Dataset index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDatasetDescription

        public void setDatasetDescription​(String description,
                                          int datasetIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Dataset.
        Specified by:
        setDatasetDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        datasetIndex - the Dataset index.
      • setDatasetExperimenterGroupRef

        public void setDatasetExperimenterGroupRef​(String experimenterGroup,
                                                   int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Dataset.
        Specified by:
        setDatasetExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        datasetIndex - the Dataset index.
      • setDatasetExperimenterRef

        public void setDatasetExperimenterRef​(String experimenter,
                                              int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Dataset.
        Specified by:
        setDatasetExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        datasetIndex - the Dataset index.
      • setDatasetID

        public void setDatasetID​(String id,
                                 int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Dataset.
        Specified by:
        setDatasetID in interface MetadataStore
        Parameters:
        id - ID to set.
        datasetIndex - the Dataset index.
      • setDatasetImageRef

        public void setDatasetImageRef​(String image,
                                       int datasetIndex,
                                       int imageRefIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of Dataset.
        Specified by:
        setDatasetImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        datasetIndex - the Dataset index.
        imageRefIndex - ImageRef index (unused).
      • setDatasetName

        public void setDatasetName​(String name,
                                   int datasetIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Dataset.
        Specified by:
        setDatasetName in interface MetadataStore
        Parameters:
        name - Name to set.
        datasetIndex - the Dataset index.
      • setDetectorAmplificationGain

        public void setDetectorAmplificationGain​(Double amplificationGain,
                                                 int instrumentIndex,
                                                 int detectorIndex)
        Description copied from interface: MetadataStore
        Set the AmplificationGain property of Detector.
        Specified by:
        setDetectorAmplificationGain in interface MetadataStore
        Parameters:
        amplificationGain - AmplificationGain to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorAnnotationRef

        public void setDetectorAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int detectorIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Detector.
        Specified by:
        setDetectorAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDetectorGain

        public void setDetectorGain​(Double gain,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Gain property of Detector.
        Specified by:
        setDetectorGain in interface MetadataStore
        Parameters:
        gain - Gain to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorID

        public void setDetectorID​(String id,
                                  int instrumentIndex,
                                  int detectorIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Detector.
        Specified by:
        setDetectorID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorLotNumber

        public void setDetectorLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int detectorIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Detector.
        Specified by:
        setDetectorLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorManufacturer

        public void setDetectorManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Detector.
        Specified by:
        setDetectorManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorModel

        public void setDetectorModel​(String model,
                                     int instrumentIndex,
                                     int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Detector.
        Specified by:
        setDetectorModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorOffset

        public void setDetectorOffset​(Double offset,
                                      int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Offset property of Detector.
        Specified by:
        setDetectorOffset in interface MetadataStore
        Parameters:
        offset - Offset to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorSerialNumber

        public void setDetectorSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Detector.
        Specified by:
        setDetectorSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorType

        public void setDetectorType​(DetectorType type,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Detector.
        Specified by:
        setDetectorType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorVoltage

        public void setDetectorVoltage​(ElectricPotential voltage,
                                       int instrumentIndex,
                                       int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Voltage property of Detector.
        Specified by:
        setDetectorVoltage in interface MetadataStore
        Parameters:
        voltage - Voltage to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorZoom

        public void setDetectorZoom​(Double zoom,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Zoom property of Detector.
        Specified by:
        setDetectorZoom in interface MetadataStore
        Parameters:
        zoom - Zoom to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorSettingsBinning

        public void setDetectorSettingsBinning​(Binning binning,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the Binning property of DetectorSettings.
        Specified by:
        setDetectorSettingsBinning in interface MetadataStore
        Parameters:
        binning - Binning to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsGain

        public void setDetectorSettingsGain​(Double gain,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Gain property of DetectorSettings.
        Specified by:
        setDetectorSettingsGain in interface MetadataStore
        Parameters:
        gain - Gain to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsID

        public void setDetectorSettingsID​(String id,
                                          int imageIndex,
                                          int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of DetectorSettings.
        Specified by:
        setDetectorSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsIntegration

        public void setDetectorSettingsIntegration​(PositiveInteger integration,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the Integration property of DetectorSettings.
        Specified by:
        setDetectorSettingsIntegration in interface MetadataStore
        Parameters:
        integration - Integration to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsOffset

        public void setDetectorSettingsOffset​(Double offset,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the Offset property of DetectorSettings.
        Specified by:
        setDetectorSettingsOffset in interface MetadataStore
        Parameters:
        offset - Offset to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsReadOutRate

        public void setDetectorSettingsReadOutRate​(Frequency readOutRate,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the ReadOutRate property of DetectorSettings.
        Specified by:
        setDetectorSettingsReadOutRate in interface MetadataStore
        Parameters:
        readOutRate - ReadOutRate to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsVoltage

        public void setDetectorSettingsVoltage​(ElectricPotential voltage,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the Voltage property of DetectorSettings.
        Specified by:
        setDetectorSettingsVoltage in interface MetadataStore
        Parameters:
        voltage - Voltage to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsZoom

        public void setDetectorSettingsZoom​(Double zoom,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Zoom property of DetectorSettings.
        Specified by:
        setDetectorSettingsZoom in interface MetadataStore
        Parameters:
        zoom - Zoom to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDichroicAnnotationRef

        public void setDichroicAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int dichroicIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Dichroic.
        Specified by:
        setDichroicAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDichroicID

        public void setDichroicID​(String id,
                                  int instrumentIndex,
                                  int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Dichroic.
        Specified by:
        setDichroicID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicLotNumber

        public void setDichroicLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Dichroic.
        Specified by:
        setDichroicLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicManufacturer

        public void setDichroicManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Dichroic.
        Specified by:
        setDichroicManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicModel

        public void setDichroicModel​(String model,
                                     int instrumentIndex,
                                     int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Dichroic.
        Specified by:
        setDichroicModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicSerialNumber

        public void setDichroicSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Dichroic.
        Specified by:
        setDichroicSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDoubleAnnotationAnnotationRef

        public void setDoubleAnnotationAnnotationRef​(String annotation,
                                                     int doubleAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDoubleAnnotationAnnotator

        public void setDoubleAnnotationAnnotator​(String annotator,
                                                 int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationDescription

        public void setDoubleAnnotationDescription​(String description,
                                                   int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationID

        public void setDoubleAnnotationID​(String id,
                                          int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationNamespace

        public void setDoubleAnnotationNamespace​(String namespace,
                                                 int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationValue

        public void setDoubleAnnotationValue​(Double value,
                                             int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setEllipseAnnotationRef

        public void setEllipseAnnotationRef​(String annotation,
                                            int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Ellipse.
        Specified by:
        setEllipseAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setEllipseFillColor

        public void setEllipseFillColor​(Color fillColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Ellipse.
        Specified by:
        setEllipseFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFillRule

        public void setEllipseFillRule​(FillRule fillRule,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Ellipse.
        Specified by:
        setEllipseFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontFamily

        public void setEllipseFontFamily​(FontFamily fontFamily,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Ellipse.
        Specified by:
        setEllipseFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontSize

        public void setEllipseFontSize​(Length fontSize,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Ellipse.
        Specified by:
        setEllipseFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontStyle

        public void setEllipseFontStyle​(FontStyle fontStyle,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Ellipse.
        Specified by:
        setEllipseFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseID

        public void setEllipseID​(String id,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Ellipse.
        Specified by:
        setEllipseID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseLocked

        public void setEllipseLocked​(Boolean locked,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Ellipse.
        Specified by:
        setEllipseLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseRadiusX

        public void setEllipseRadiusX​(Double radiusX,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the RadiusX property of Ellipse.
        Specified by:
        setEllipseRadiusX in interface MetadataStore
        Parameters:
        radiusX - RadiusX to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseRadiusY

        public void setEllipseRadiusY​(Double radiusY,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the RadiusY property of Ellipse.
        Specified by:
        setEllipseRadiusY in interface MetadataStore
        Parameters:
        radiusY - RadiusY to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeColor

        public void setEllipseStrokeColor​(Color strokeColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Ellipse.
        Specified by:
        setEllipseStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeDashArray

        public void setEllipseStrokeDashArray​(String strokeDashArray,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Ellipse.
        Specified by:
        setEllipseStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeWidth

        public void setEllipseStrokeWidth​(Length strokeWidth,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Ellipse.
        Specified by:
        setEllipseStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseText

        public void setEllipseText​(String text,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Ellipse.
        Specified by:
        setEllipseText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheC

        public void setEllipseTheC​(NonNegativeInteger theC,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Ellipse.
        Specified by:
        setEllipseTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheT

        public void setEllipseTheT​(NonNegativeInteger theT,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Ellipse.
        Specified by:
        setEllipseTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheZ

        public void setEllipseTheZ​(NonNegativeInteger theZ,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Ellipse.
        Specified by:
        setEllipseTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTransform

        public void setEllipseTransform​(AffineTransform transform,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Ellipse.
        Specified by:
        setEllipseTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseX

        public void setEllipseX​(Double x,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Ellipse.
        Specified by:
        setEllipseX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseY

        public void setEllipseY​(Double y,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Ellipse.
        Specified by:
        setEllipseY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setExperimentDescription

        public void setExperimentDescription​(String description,
                                             int experimentIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Experiment.
        Specified by:
        setExperimentDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimentIndex - the Experiment index.
      • setExperimentExperimenterRef

        public void setExperimentExperimenterRef​(String experimenter,
                                                 int experimentIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Experiment.
        Specified by:
        setExperimentExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimentIndex - the Experiment index.
      • setExperimentID

        public void setExperimentID​(String id,
                                    int experimentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Experiment.
        Specified by:
        setExperimentID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
      • setExperimentType

        public void setExperimentType​(ExperimentType type,
                                      int experimentIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Experiment.
        Specified by:
        setExperimentType in interface MetadataStore
        Parameters:
        type - Type to set.
        experimentIndex - the Experiment index.
      • setExperimenterAnnotationRef

        public void setExperimenterAnnotationRef​(String annotation,
                                                 int experimenterIndex,
                                                 int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Experimenter.
        Specified by:
        setExperimenterAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        experimenterIndex - the Experimenter index.
        annotationRefIndex - AnnotationRef index (unused).
      • setExperimenterEmail

        public void setExperimenterEmail​(String email,
                                         int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the Email property of Experimenter.
        Specified by:
        setExperimenterEmail in interface MetadataStore
        Parameters:
        email - Email to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterFirstName

        public void setExperimenterFirstName​(String firstName,
                                             int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the FirstName property of Experimenter.
        Specified by:
        setExperimenterFirstName in interface MetadataStore
        Parameters:
        firstName - FirstName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterID

        public void setExperimenterID​(String id,
                                      int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Experimenter.
        Specified by:
        setExperimenterID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterInstitution

        public void setExperimenterInstitution​(String institution,
                                               int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the Institution property of Experimenter.
        Specified by:
        setExperimenterInstitution in interface MetadataStore
        Parameters:
        institution - Institution to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterLastName

        public void setExperimenterLastName​(String lastName,
                                            int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the LastName property of Experimenter.
        Specified by:
        setExperimenterLastName in interface MetadataStore
        Parameters:
        lastName - LastName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterMiddleName

        public void setExperimenterMiddleName​(String middleName,
                                              int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the MiddleName property of Experimenter.
        Specified by:
        setExperimenterMiddleName in interface MetadataStore
        Parameters:
        middleName - MiddleName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterUserName

        public void setExperimenterUserName​(String userName,
                                            int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the UserName property of Experimenter.
        Specified by:
        setExperimenterUserName in interface MetadataStore
        Parameters:
        userName - UserName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterGroupAnnotationRef

        public void setExperimenterGroupAnnotationRef​(String annotation,
                                                      int experimenterGroupIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        annotationRefIndex - AnnotationRef index (unused).
      • setExperimenterGroupDescription

        public void setExperimenterGroupDescription​(String description,
                                                    int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setExperimenterGroupExperimenterRef

        public void setExperimenterGroupExperimenterRef​(String experimenter,
                                                        int experimenterGroupIndex,
                                                        int experimenterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        experimenterRefIndex - ExperimenterRef index (unused).
      • setExperimenterGroupID

        public void setExperimenterGroupID​(String id,
                                           int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setExperimenterGroupLeader

        public void setExperimenterGroupLeader​(String leader,
                                               int experimenterGroupIndex,
                                               int leaderIndex)
        Description copied from interface: MetadataStore
        Set the Leader property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupLeader in interface MetadataStore
        Parameters:
        leader - Leader to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        leaderIndex - Leader index (unused).
      • setExperimenterGroupName

        public void setExperimenterGroupName​(String name,
                                             int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the Name property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupName in interface MetadataStore
        Parameters:
        name - Name to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setFilamentAnnotationRef

        public void setFilamentAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int lightSourceIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Filament.
        Specified by:
        setFilamentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFilamentID

        public void setFilamentID​(String id,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Filament.
        Specified by:
        setFilamentID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentLotNumber

        public void setFilamentLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Filament.
        Specified by:
        setFilamentLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentManufacturer

        public void setFilamentManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Filament.
        Specified by:
        setFilamentManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentModel

        public void setFilamentModel​(String model,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Filament.
        Specified by:
        setFilamentModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentPower

        public void setFilamentPower​(Power power,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Filament.
        Specified by:
        setFilamentPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentSerialNumber

        public void setFilamentSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Filament.
        Specified by:
        setFilamentSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentType

        public void setFilamentType​(FilamentType type,
                                    int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Filament.
        Specified by:
        setFilamentType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFileAnnotationAnnotationRef

        public void setFileAnnotationAnnotationRef​(String annotation,
                                                   int fileAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of FileAnnotation.
        Specified by:
        setFileAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        fileAnnotationIndex - the FileAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFileAnnotationAnnotator

        public void setFileAnnotationAnnotator​(String annotator,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of FileAnnotation.
        Specified by:
        setFileAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationDescription

        public void setFileAnnotationDescription​(String description,
                                                 int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of FileAnnotation.
        Specified by:
        setFileAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationID

        public void setFileAnnotationID​(String id,
                                        int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of FileAnnotation.
        Specified by:
        setFileAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationNamespace

        public void setFileAnnotationNamespace​(String namespace,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of FileAnnotation.
        Specified by:
        setFileAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFilterAnnotationRef

        public void setFilterAnnotationRef​(String annotation,
                                           int instrumentIndex,
                                           int filterIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Filter.
        Specified by:
        setFilterAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFilterFilterWheel

        public void setFilterFilterWheel​(String filterWheel,
                                         int instrumentIndex,
                                         int filterIndex)
        Description copied from interface: MetadataStore
        Set the FilterWheel property of Filter.
        Specified by:
        setFilterFilterWheel in interface MetadataStore
        Parameters:
        filterWheel - FilterWheel to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterID

        public void setFilterID​(String id,
                                int instrumentIndex,
                                int filterIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Filter.
        Specified by:
        setFilterID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterLotNumber

        public void setFilterLotNumber​(String lotNumber,
                                       int instrumentIndex,
                                       int filterIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Filter.
        Specified by:
        setFilterLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterManufacturer

        public void setFilterManufacturer​(String manufacturer,
                                          int instrumentIndex,
                                          int filterIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Filter.
        Specified by:
        setFilterManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterModel

        public void setFilterModel​(String model,
                                   int instrumentIndex,
                                   int filterIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Filter.
        Specified by:
        setFilterModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterSerialNumber

        public void setFilterSerialNumber​(String serialNumber,
                                          int instrumentIndex,
                                          int filterIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Filter.
        Specified by:
        setFilterSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterType

        public void setFilterType​(FilterType type,
                                  int instrumentIndex,
                                  int filterIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Filter.
        Specified by:
        setFilterType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterSetDichroicRef

        public void setFilterSetDichroicRef​(String dichroic,
                                            int instrumentIndex,
                                            int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the DichroicRef property of FilterSet.
        Specified by:
        setFilterSetDichroicRef in interface MetadataStore
        Parameters:
        dichroic - DichroicRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetEmissionFilterRef

        public void setFilterSetEmissionFilterRef​(String emissionFilter,
                                                  int instrumentIndex,
                                                  int filterSetIndex,
                                                  int emissionFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the EmissionFilterRef property of FilterSet.
        Specified by:
        setFilterSetEmissionFilterRef in interface MetadataStore
        Parameters:
        emissionFilter - EmissionFilterRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        emissionFilterRefIndex - EmissionFilterRef index (unused).
      • setFilterSetExcitationFilterRef

        public void setFilterSetExcitationFilterRef​(String excitationFilter,
                                                    int instrumentIndex,
                                                    int filterSetIndex,
                                                    int excitationFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationFilterRef property of FilterSet.
        Specified by:
        setFilterSetExcitationFilterRef in interface MetadataStore
        Parameters:
        excitationFilter - ExcitationFilterRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        excitationFilterRefIndex - ExcitationFilterRef index (unused).
      • setFilterSetID

        public void setFilterSetID​(String id,
                                   int instrumentIndex,
                                   int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the ID property of FilterSet.
        Specified by:
        setFilterSetID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetLotNumber

        public void setFilterSetLotNumber​(String lotNumber,
                                          int instrumentIndex,
                                          int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of FilterSet.
        Specified by:
        setFilterSetLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetManufacturer

        public void setFilterSetManufacturer​(String manufacturer,
                                             int instrumentIndex,
                                             int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of FilterSet.
        Specified by:
        setFilterSetManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetModel

        public void setFilterSetModel​(String model,
                                      int instrumentIndex,
                                      int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the Model property of FilterSet.
        Specified by:
        setFilterSetModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetSerialNumber

        public void setFilterSetSerialNumber​(String serialNumber,
                                             int instrumentIndex,
                                             int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of FilterSet.
        Specified by:
        setFilterSetSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFolderAnnotationRef

        public void setFolderAnnotationRef​(String annotation,
                                           int folderIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Folder.
        Specified by:
        setFolderAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        folderIndex - the Folder index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFolderDescription

        public void setFolderDescription​(String description,
                                         int folderIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Folder.
        Specified by:
        setFolderDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        folderIndex - the Folder index.
      • setFolderFolderRef

        public void setFolderFolderRef​(String folder,
                                       int folderIndex,
                                       int folderRefIndex)
        Description copied from interface: MetadataStore
        Set the FolderRef property of Folder.
        Specified by:
        setFolderFolderRef in interface MetadataStore
        Parameters:
        folder - FolderRef to set.
        folderIndex - the Folder index.
        folderRefIndex - FolderRef index (unused).
      • setFolderID

        public void setFolderID​(String id,
                                int folderIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Folder.
        Specified by:
        setFolderID in interface MetadataStore
        Parameters:
        id - ID to set.
        folderIndex - the Folder index.
      • setFolderImageRef

        public void setFolderImageRef​(String image,
                                      int folderIndex,
                                      int imageRefIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of Folder.
        Specified by:
        setFolderImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        folderIndex - the Folder index.
        imageRefIndex - ImageRef index (unused).
      • setFolderName

        public void setFolderName​(String name,
                                  int folderIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Folder.
        Specified by:
        setFolderName in interface MetadataStore
        Parameters:
        name - Name to set.
        folderIndex - the Folder index.
      • setFolderROIRef

        public void setFolderROIRef​(String roi,
                                    int folderIndex,
                                    int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of Folder.
        Specified by:
        setFolderROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        folderIndex - the Folder index.
        ROIRefIndex - ROIRef index (unused).
      • setGenericExcitationSourceAnnotationRef

        public void setGenericExcitationSourceAnnotationRef​(String annotation,
                                                            int instrumentIndex,
                                                            int lightSourceIndex,
                                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setGenericExcitationSourceID

        public void setGenericExcitationSourceID​(String id,
                                                 int instrumentIndex,
                                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceLotNumber

        public void setGenericExcitationSourceLotNumber​(String lotNumber,
                                                        int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceManufacturer

        public void setGenericExcitationSourceManufacturer​(String manufacturer,
                                                           int instrumentIndex,
                                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceModel

        public void setGenericExcitationSourceModel​(String model,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourcePower

        public void setGenericExcitationSourcePower​(Power power,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourcePower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceSerialNumber

        public void setGenericExcitationSourceSerialNumber​(String serialNumber,
                                                           int instrumentIndex,
                                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setImageAcquisitionDate

        public void setImageAcquisitionDate​(Timestamp acquisitionDate,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the AcquisitionDate property of Image.
        Specified by:
        setImageAcquisitionDate in interface MetadataStore
        Parameters:
        acquisitionDate - AcquisitionDate to set.
        imageIndex - the Image index.
      • setImageAnnotationRef

        public void setImageAnnotationRef​(String annotation,
                                          int imageIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Image.
        Specified by:
        setImageAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        annotationRefIndex - AnnotationRef index (unused).
      • setImageDescription

        public void setImageDescription​(String description,
                                        int imageIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Image.
        Specified by:
        setImageDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        imageIndex - the Image index.
      • setImageExperimentRef

        public void setImageExperimentRef​(String experiment,
                                          int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimentRef property of Image.
        Specified by:
        setImageExperimentRef in interface MetadataStore
        Parameters:
        experiment - ExperimentRef to set.
        imageIndex - the Image index.
      • setImageExperimenterGroupRef

        public void setImageExperimenterGroupRef​(String experimenterGroup,
                                                 int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Image.
        Specified by:
        setImageExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        imageIndex - the Image index.
      • setImageExperimenterRef

        public void setImageExperimenterRef​(String experimenter,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Image.
        Specified by:
        setImageExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        imageIndex - the Image index.
      • setImageID

        public void setImageID​(String id,
                               int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Image.
        Specified by:
        setImageID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setImageInstrumentRef

        public void setImageInstrumentRef​(String instrument,
                                          int imageIndex)
        Description copied from interface: MetadataStore
        Set the InstrumentRef property of Image.
        Specified by:
        setImageInstrumentRef in interface MetadataStore
        Parameters:
        instrument - InstrumentRef to set.
        imageIndex - the Image index.
      • setImageMicrobeamManipulationRef

        public void setImageMicrobeamManipulationRef​(String microbeamManipulation,
                                                     int imageIndex,
                                                     int microbeamManipulationRefIndex)
        Description copied from interface: MetadataStore
        Set the MicrobeamManipulationRef property of Image.
        Specified by:
        setImageMicrobeamManipulationRef in interface MetadataStore
        Parameters:
        microbeamManipulation - MicrobeamManipulationRef to set.
        imageIndex - the Image index.
        microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).
      • setImageName

        public void setImageName​(String name,
                                 int imageIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Image.
        Specified by:
        setImageName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
      • setImageROIRef

        public void setImageROIRef​(String roi,
                                   int imageIndex,
                                   int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of Image.
        Specified by:
        setImageROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        imageIndex - the Image index.
        ROIRefIndex - ROIRef index (unused).
      • setImagingEnvironmentAirPressure

        public void setImagingEnvironmentAirPressure​(Pressure airPressure,
                                                     int imageIndex)
        Description copied from interface: MetadataStore
        Set the AirPressure property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentAirPressure in interface MetadataStore
        Parameters:
        airPressure - AirPressure to set.
        imageIndex - the Image index.
      • setImagingEnvironmentCO2Percent

        public void setImagingEnvironmentCO2Percent​(PercentFraction co2Percent,
                                                    int imageIndex)
        Description copied from interface: MetadataStore
        Set the CO2Percent property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentCO2Percent in interface MetadataStore
        Parameters:
        co2Percent - CO2Percent to set.
        imageIndex - the Image index.
      • setImagingEnvironmentHumidity

        public void setImagingEnvironmentHumidity​(PercentFraction humidity,
                                                  int imageIndex)
        Description copied from interface: MetadataStore
        Set the Humidity property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentHumidity in interface MetadataStore
        Parameters:
        humidity - Humidity to set.
        imageIndex - the Image index.
      • setImagingEnvironmentTemperature

        public void setImagingEnvironmentTemperature​(Temperature temperature,
                                                     int imageIndex)
        Description copied from interface: MetadataStore
        Set the Temperature property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentTemperature in interface MetadataStore
        Parameters:
        temperature - Temperature to set.
        imageIndex - the Image index.
      • setInstrumentAnnotationRef

        public void setInstrumentAnnotationRef​(String annotation,
                                               int instrumentIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Instrument.
        Specified by:
        setInstrumentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        annotationRefIndex - AnnotationRef index (unused).
      • setInstrumentID

        public void setInstrumentID​(String id,
                                    int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Instrument.
        Specified by:
        setInstrumentID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
      • setLabelAnnotationRef

        public void setLabelAnnotationRef​(String annotation,
                                          int ROIIndex,
                                          int shapeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Label.
        Specified by:
        setLabelAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLabelFillColor

        public void setLabelFillColor​(Color fillColor,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Label.
        Specified by:
        setLabelFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFillRule

        public void setLabelFillRule​(FillRule fillRule,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Label.
        Specified by:
        setLabelFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontFamily

        public void setLabelFontFamily​(FontFamily fontFamily,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Label.
        Specified by:
        setLabelFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontSize

        public void setLabelFontSize​(Length fontSize,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Label.
        Specified by:
        setLabelFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontStyle

        public void setLabelFontStyle​(FontStyle fontStyle,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Label.
        Specified by:
        setLabelFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelID

        public void setLabelID​(String id,
                               int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Label.
        Specified by:
        setLabelID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelLocked

        public void setLabelLocked​(Boolean locked,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Label.
        Specified by:
        setLabelLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeColor

        public void setLabelStrokeColor​(Color strokeColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Label.
        Specified by:
        setLabelStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeDashArray

        public void setLabelStrokeDashArray​(String strokeDashArray,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Label.
        Specified by:
        setLabelStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeWidth

        public void setLabelStrokeWidth​(Length strokeWidth,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Label.
        Specified by:
        setLabelStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelText

        public void setLabelText​(String text,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Label.
        Specified by:
        setLabelText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheC

        public void setLabelTheC​(NonNegativeInteger theC,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Label.
        Specified by:
        setLabelTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheT

        public void setLabelTheT​(NonNegativeInteger theT,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Label.
        Specified by:
        setLabelTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheZ

        public void setLabelTheZ​(NonNegativeInteger theZ,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Label.
        Specified by:
        setLabelTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTransform

        public void setLabelTransform​(AffineTransform transform,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Label.
        Specified by:
        setLabelTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelX

        public void setLabelX​(Double x,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Label.
        Specified by:
        setLabelX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelY

        public void setLabelY​(Double y,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Label.
        Specified by:
        setLabelY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLaserAnnotationRef

        public void setLaserAnnotationRef​(String annotation,
                                          int instrumentIndex,
                                          int lightSourceIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Laser.
        Specified by:
        setLaserAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLaserFrequencyMultiplication

        public void setLaserFrequencyMultiplication​(PositiveInteger frequencyMultiplication,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the FrequencyMultiplication property of Laser.
        Specified by:
        setLaserFrequencyMultiplication in interface MetadataStore
        Parameters:
        frequencyMultiplication - FrequencyMultiplication to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserID

        public void setLaserID​(String id,
                               int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Laser.
        Specified by:
        setLaserID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserLaserMedium

        public void setLaserLaserMedium​(LaserMedium laserMedium,
                                        int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LaserMedium property of Laser.
        Specified by:
        setLaserLaserMedium in interface MetadataStore
        Parameters:
        laserMedium - LaserMedium to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserLotNumber

        public void setLaserLotNumber​(String lotNumber,
                                      int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Laser.
        Specified by:
        setLaserLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserManufacturer

        public void setLaserManufacturer​(String manufacturer,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Laser.
        Specified by:
        setLaserManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserModel

        public void setLaserModel​(String model,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Laser.
        Specified by:
        setLaserModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPockelCell

        public void setLaserPockelCell​(Boolean pockelCell,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the PockelCell property of Laser.
        Specified by:
        setLaserPockelCell in interface MetadataStore
        Parameters:
        pockelCell - PockelCell to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPower

        public void setLaserPower​(Power power,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Laser.
        Specified by:
        setLaserPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPulse

        public void setLaserPulse​(Pulse pulse,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Pulse property of Laser.
        Specified by:
        setLaserPulse in interface MetadataStore
        Parameters:
        pulse - Pulse to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPump

        public void setLaserPump​(String pump,
                                 int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Pump property of Laser.
        Specified by:
        setLaserPump in interface MetadataStore
        Parameters:
        pump - Pump to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserRepetitionRate

        public void setLaserRepetitionRate​(Frequency repetitionRate,
                                           int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the RepetitionRate property of Laser.
        Specified by:
        setLaserRepetitionRate in interface MetadataStore
        Parameters:
        repetitionRate - RepetitionRate to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserSerialNumber

        public void setLaserSerialNumber​(String serialNumber,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Laser.
        Specified by:
        setLaserSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserTuneable

        public void setLaserTuneable​(Boolean tuneable,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Tuneable property of Laser.
        Specified by:
        setLaserTuneable in interface MetadataStore
        Parameters:
        tuneable - Tuneable to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserType

        public void setLaserType​(LaserType type,
                                 int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Laser.
        Specified by:
        setLaserType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserWavelength

        public void setLaserWavelength​(Length wavelength,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of Laser.
        Specified by:
        setLaserWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeAnnotationRef

        public void setLightEmittingDiodeAnnotationRef​(String annotation,
                                                       int instrumentIndex,
                                                       int lightSourceIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLightEmittingDiodeID

        public void setLightEmittingDiodeID​(String id,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeLotNumber

        public void setLightEmittingDiodeLotNumber​(String lotNumber,
                                                   int instrumentIndex,
                                                   int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeManufacturer

        public void setLightEmittingDiodeManufacturer​(String manufacturer,
                                                      int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeModel

        public void setLightEmittingDiodeModel​(String model,
                                               int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodePower

        public void setLightEmittingDiodePower​(Power power,
                                               int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodePower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeSerialNumber

        public void setLightEmittingDiodeSerialNumber​(String serialNumber,
                                                      int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightPathAnnotationRef

        public void setLightPathAnnotationRef​(String annotation,
                                              int imageIndex,
                                              int channelIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LightPath.
        Specified by:
        setLightPathAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLightPathDichroicRef

        public void setLightPathDichroicRef​(String dichroic,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the DichroicRef property of LightPath.
        Specified by:
        setLightPathDichroicRef in interface MetadataStore
        Parameters:
        dichroic - DichroicRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setLightPathEmissionFilterRef

        public void setLightPathEmissionFilterRef​(String emissionFilter,
                                                  int imageIndex,
                                                  int channelIndex,
                                                  int emissionFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the EmissionFilterRef property of LightPath.
        Specified by:
        setLightPathEmissionFilterRef in interface MetadataStore
        Parameters:
        emissionFilter - EmissionFilterRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        emissionFilterRefIndex - EmissionFilterRef index (unused).
      • setLightPathExcitationFilterRef

        public void setLightPathExcitationFilterRef​(String excitationFilter,
                                                    int imageIndex,
                                                    int channelIndex,
                                                    int excitationFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationFilterRef property of LightPath.
        Specified by:
        setLightPathExcitationFilterRef in interface MetadataStore
        Parameters:
        excitationFilter - ExcitationFilterRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        excitationFilterRefIndex - ExcitationFilterRef index (unused).
      • setChannelLightSourceSettingsAttenuation

        public void setChannelLightSourceSettingsAttenuation​(PercentFraction attenuation,
                                                             int imageIndex,
                                                             int channelIndex)
        Description copied from interface: MetadataStore
        Set the Attenuation property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsAttenuation in interface MetadataStore
        Parameters:
        attenuation - Attenuation to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsAttenuation

        public void setMicrobeamManipulationLightSourceSettingsAttenuation​(PercentFraction attenuation,
                                                                           int experimentIndex,
                                                                           int microbeamManipulationIndex,
                                                                           int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the Attenuation property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataStore
        Parameters:
        attenuation - Attenuation to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setChannelLightSourceSettingsID

        public void setChannelLightSourceSettingsID​(String id,
                                                    int imageIndex,
                                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsID

        public void setMicrobeamManipulationLightSourceSettingsID​(String id,
                                                                  int experimentIndex,
                                                                  int microbeamManipulationIndex,
                                                                  int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setChannelLightSourceSettingsWavelength

        public void setChannelLightSourceSettingsWavelength​(Length wavelength,
                                                            int imageIndex,
                                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsWavelength

        public void setMicrobeamManipulationLightSourceSettingsWavelength​(Length wavelength,
                                                                          int experimentIndex,
                                                                          int microbeamManipulationIndex,
                                                                          int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setLineAnnotationRef

        public void setLineAnnotationRef​(String annotation,
                                         int ROIIndex,
                                         int shapeIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Line.
        Specified by:
        setLineAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLineFillColor

        public void setLineFillColor​(Color fillColor,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Line.
        Specified by:
        setLineFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFillRule

        public void setLineFillRule​(FillRule fillRule,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Line.
        Specified by:
        setLineFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontFamily

        public void setLineFontFamily​(FontFamily fontFamily,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Line.
        Specified by:
        setLineFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontSize

        public void setLineFontSize​(Length fontSize,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Line.
        Specified by:
        setLineFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontStyle

        public void setLineFontStyle​(FontStyle fontStyle,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Line.
        Specified by:
        setLineFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineID

        public void setLineID​(String id,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Line.
        Specified by:
        setLineID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineLocked

        public void setLineLocked​(Boolean locked,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Line.
        Specified by:
        setLineLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineMarkerEnd

        public void setLineMarkerEnd​(Marker markerEnd,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerEnd property of Line.
        Specified by:
        setLineMarkerEnd in interface MetadataStore
        Parameters:
        markerEnd - MarkerEnd to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineMarkerStart

        public void setLineMarkerStart​(Marker markerStart,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerStart property of Line.
        Specified by:
        setLineMarkerStart in interface MetadataStore
        Parameters:
        markerStart - MarkerStart to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeColor

        public void setLineStrokeColor​(Color strokeColor,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Line.
        Specified by:
        setLineStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeDashArray

        public void setLineStrokeDashArray​(String strokeDashArray,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Line.
        Specified by:
        setLineStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeWidth

        public void setLineStrokeWidth​(Length strokeWidth,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Line.
        Specified by:
        setLineStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineText

        public void setLineText​(String text,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Line.
        Specified by:
        setLineText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheC

        public void setLineTheC​(NonNegativeInteger theC,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Line.
        Specified by:
        setLineTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheT

        public void setLineTheT​(NonNegativeInteger theT,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Line.
        Specified by:
        setLineTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheZ

        public void setLineTheZ​(NonNegativeInteger theZ,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Line.
        Specified by:
        setLineTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTransform

        public void setLineTransform​(AffineTransform transform,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Line.
        Specified by:
        setLineTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineX1

        public void setLineX1​(Double x1,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X1 property of Line.
        Specified by:
        setLineX1 in interface MetadataStore
        Parameters:
        x1 - X1 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineX2

        public void setLineX2​(Double x2,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X2 property of Line.
        Specified by:
        setLineX2 in interface MetadataStore
        Parameters:
        x2 - X2 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineY1

        public void setLineY1​(Double y1,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y1 property of Line.
        Specified by:
        setLineY1 in interface MetadataStore
        Parameters:
        y1 - Y1 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineY2

        public void setLineY2​(Double y2,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y2 property of Line.
        Specified by:
        setLineY2 in interface MetadataStore
        Parameters:
        y2 - Y2 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setListAnnotationAnnotationRef

        public void setListAnnotationAnnotationRef​(String annotation,
                                                   int listAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ListAnnotation.
        Specified by:
        setListAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        listAnnotationIndex - the ListAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setListAnnotationAnnotator

        public void setListAnnotationAnnotator​(String annotator,
                                               int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of ListAnnotation.
        Specified by:
        setListAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationDescription

        public void setListAnnotationDescription​(String description,
                                                 int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ListAnnotation.
        Specified by:
        setListAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationID

        public void setListAnnotationID​(String id,
                                        int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ListAnnotation.
        Specified by:
        setListAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationNamespace

        public void setListAnnotationNamespace​(String namespace,
                                               int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of ListAnnotation.
        Specified by:
        setListAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        listAnnotationIndex - the ListAnnotation index.
      • setLongAnnotationAnnotationRef

        public void setLongAnnotationAnnotationRef​(String annotation,
                                                   int longAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LongAnnotation.
        Specified by:
        setLongAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        longAnnotationIndex - the LongAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLongAnnotationAnnotator

        public void setLongAnnotationAnnotator​(String annotator,
                                               int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of LongAnnotation.
        Specified by:
        setLongAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationDescription

        public void setLongAnnotationDescription​(String description,
                                                 int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of LongAnnotation.
        Specified by:
        setLongAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationID

        public void setLongAnnotationID​(String id,
                                        int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LongAnnotation.
        Specified by:
        setLongAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationNamespace

        public void setLongAnnotationNamespace​(String namespace,
                                               int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of LongAnnotation.
        Specified by:
        setLongAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationValue

        public void setLongAnnotationValue​(Long value,
                                           int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of LongAnnotation.
        Specified by:
        setLongAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        longAnnotationIndex - the LongAnnotation index.
      • setMapAnnotationAnnotationRef

        public void setMapAnnotationAnnotationRef​(String annotation,
                                                  int mapAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of MapAnnotation.
        Specified by:
        setMapAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        mapAnnotationIndex - the MapAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setMapAnnotationAnnotator

        public void setMapAnnotationAnnotator​(String annotator,
                                              int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of MapAnnotation.
        Specified by:
        setMapAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationDescription

        public void setMapAnnotationDescription​(String description,
                                                int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of MapAnnotation.
        Specified by:
        setMapAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationID

        public void setMapAnnotationID​(String id,
                                       int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of MapAnnotation.
        Specified by:
        setMapAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationNamespace

        public void setMapAnnotationNamespace​(String namespace,
                                              int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of MapAnnotation.
        Specified by:
        setMapAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMaskAnnotationRef

        public void setMaskAnnotationRef​(String annotation,
                                         int ROIIndex,
                                         int shapeIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Mask.
        Specified by:
        setMaskAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setMaskFillColor

        public void setMaskFillColor​(Color fillColor,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Mask.
        Specified by:
        setMaskFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFillRule

        public void setMaskFillRule​(FillRule fillRule,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Mask.
        Specified by:
        setMaskFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontFamily

        public void setMaskFontFamily​(FontFamily fontFamily,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Mask.
        Specified by:
        setMaskFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontSize

        public void setMaskFontSize​(Length fontSize,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Mask.
        Specified by:
        setMaskFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontStyle

        public void setMaskFontStyle​(FontStyle fontStyle,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Mask.
        Specified by:
        setMaskFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskHeight

        public void setMaskHeight​(Double height,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Height property of Mask.
        Specified by:
        setMaskHeight in interface MetadataStore
        Parameters:
        height - Height to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskID

        public void setMaskID​(String id,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Mask.
        Specified by:
        setMaskID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskLocked

        public void setMaskLocked​(Boolean locked,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Mask.
        Specified by:
        setMaskLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeColor

        public void setMaskStrokeColor​(Color strokeColor,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Mask.
        Specified by:
        setMaskStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeDashArray

        public void setMaskStrokeDashArray​(String strokeDashArray,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Mask.
        Specified by:
        setMaskStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeWidth

        public void setMaskStrokeWidth​(Length strokeWidth,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Mask.
        Specified by:
        setMaskStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskText

        public void setMaskText​(String text,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Mask.
        Specified by:
        setMaskText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheC

        public void setMaskTheC​(NonNegativeInteger theC,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Mask.
        Specified by:
        setMaskTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheT

        public void setMaskTheT​(NonNegativeInteger theT,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Mask.
        Specified by:
        setMaskTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheZ

        public void setMaskTheZ​(NonNegativeInteger theZ,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Mask.
        Specified by:
        setMaskTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTransform

        public void setMaskTransform​(AffineTransform transform,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Mask.
        Specified by:
        setMaskTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskWidth

        public void setMaskWidth​(Double width,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Width property of Mask.
        Specified by:
        setMaskWidth in interface MetadataStore
        Parameters:
        width - Width to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskX

        public void setMaskX​(Double x,
                             int ROIIndex,
                             int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Mask.
        Specified by:
        setMaskX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskY

        public void setMaskY​(Double y,
                             int ROIIndex,
                             int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Mask.
        Specified by:
        setMaskY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMicrobeamManipulationDescription

        public void setMicrobeamManipulationDescription​(String description,
                                                        int experimentIndex,
                                                        int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationExperimenterRef

        public void setMicrobeamManipulationExperimenterRef​(String experimenter,
                                                            int experimentIndex,
                                                            int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationID

        public void setMicrobeamManipulationID​(String id,
                                               int experimentIndex,
                                               int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationROIRef

        public void setMicrobeamManipulationROIRef​(String roi,
                                                   int experimentIndex,
                                                   int microbeamManipulationIndex,
                                                   int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        ROIRefIndex - ROIRef index (unused).
      • setMicrobeamManipulationType

        public void setMicrobeamManipulationType​(MicrobeamManipulationType type,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the Type property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationType in interface MetadataStore
        Parameters:
        type - Type to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicroscopeLotNumber

        public void setMicroscopeLotNumber​(String lotNumber,
                                           int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Microscope.
        Specified by:
        setMicroscopeLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeManufacturer

        public void setMicroscopeManufacturer​(String manufacturer,
                                              int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Microscope.
        Specified by:
        setMicroscopeManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeModel

        public void setMicroscopeModel​(String model,
                                       int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Microscope.
        Specified by:
        setMicroscopeModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeSerialNumber

        public void setMicroscopeSerialNumber​(String serialNumber,
                                              int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Microscope.
        Specified by:
        setMicroscopeSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeType

        public void setMicroscopeType​(MicroscopeType type,
                                      int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Microscope.
        Specified by:
        setMicroscopeType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
      • setObjectiveAnnotationRef

        public void setObjectiveAnnotationRef​(String annotation,
                                              int instrumentIndex,
                                              int objectiveIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Objective.
        Specified by:
        setObjectiveAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        annotationRefIndex - AnnotationRef index (unused).
      • setObjectiveCalibratedMagnification

        public void setObjectiveCalibratedMagnification​(Double calibratedMagnification,
                                                        int instrumentIndex,
                                                        int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the CalibratedMagnification property of Objective.
        Specified by:
        setObjectiveCalibratedMagnification in interface MetadataStore
        Parameters:
        calibratedMagnification - CalibratedMagnification to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveCorrection

        public void setObjectiveCorrection​(Correction correction,
                                           int instrumentIndex,
                                           int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Correction property of Objective.
        Specified by:
        setObjectiveCorrection in interface MetadataStore
        Parameters:
        correction - Correction to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveID

        public void setObjectiveID​(String id,
                                   int instrumentIndex,
                                   int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Objective.
        Specified by:
        setObjectiveID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveImmersion

        public void setObjectiveImmersion​(Immersion immersion,
                                          int instrumentIndex,
                                          int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Immersion property of Objective.
        Specified by:
        setObjectiveImmersion in interface MetadataStore
        Parameters:
        immersion - Immersion to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveIris

        public void setObjectiveIris​(Boolean iris,
                                     int instrumentIndex,
                                     int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Iris property of Objective.
        Specified by:
        setObjectiveIris in interface MetadataStore
        Parameters:
        iris - Iris to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveLensNA

        public void setObjectiveLensNA​(Double lensNA,
                                       int instrumentIndex,
                                       int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the LensNA property of Objective.
        Specified by:
        setObjectiveLensNA in interface MetadataStore
        Parameters:
        lensNA - LensNA to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveLotNumber

        public void setObjectiveLotNumber​(String lotNumber,
                                          int instrumentIndex,
                                          int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Objective.
        Specified by:
        setObjectiveLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveManufacturer

        public void setObjectiveManufacturer​(String manufacturer,
                                             int instrumentIndex,
                                             int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Objective.
        Specified by:
        setObjectiveManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveModel

        public void setObjectiveModel​(String model,
                                      int instrumentIndex,
                                      int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Objective.
        Specified by:
        setObjectiveModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveNominalMagnification

        public void setObjectiveNominalMagnification​(Double nominalMagnification,
                                                     int instrumentIndex,
                                                     int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the NominalMagnification property of Objective.
        Specified by:
        setObjectiveNominalMagnification in interface MetadataStore
        Parameters:
        nominalMagnification - NominalMagnification to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveSerialNumber

        public void setObjectiveSerialNumber​(String serialNumber,
                                             int instrumentIndex,
                                             int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Objective.
        Specified by:
        setObjectiveSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveWorkingDistance

        public void setObjectiveWorkingDistance​(Length workingDistance,
                                                int instrumentIndex,
                                                int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the WorkingDistance property of Objective.
        Specified by:
        setObjectiveWorkingDistance in interface MetadataStore
        Parameters:
        workingDistance - WorkingDistance to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveSettingsCorrectionCollar

        public void setObjectiveSettingsCorrectionCollar​(Double correctionCollar,
                                                         int imageIndex)
        Description copied from interface: MetadataStore
        Set the CorrectionCollar property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsCorrectionCollar in interface MetadataStore
        Parameters:
        correctionCollar - CorrectionCollar to set.
        imageIndex - the Image index.
      • setObjectiveSettingsID

        public void setObjectiveSettingsID​(String id,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setObjectiveSettingsMedium

        public void setObjectiveSettingsMedium​(Medium medium,
                                               int imageIndex)
        Description copied from interface: MetadataStore
        Set the Medium property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsMedium in interface MetadataStore
        Parameters:
        medium - Medium to set.
        imageIndex - the Image index.
      • setObjectiveSettingsRefractiveIndex

        public void setObjectiveSettingsRefractiveIndex​(Double refractiveIndex,
                                                        int imageIndex)
        Description copied from interface: MetadataStore
        Set the RefractiveIndex property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsRefractiveIndex in interface MetadataStore
        Parameters:
        refractiveIndex - RefractiveIndex to set.
        imageIndex - the Image index.
      • setPixelsBigEndian

        public void setPixelsBigEndian​(Boolean bigEndian,
                                       int imageIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of Pixels.
        Specified by:
        setPixelsBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        imageIndex - the Image index.
      • setPixelsDimensionOrder

        public void setPixelsDimensionOrder​(DimensionOrder dimensionOrder,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the DimensionOrder property of Pixels.
        Specified by:
        setPixelsDimensionOrder in interface MetadataStore
        Parameters:
        dimensionOrder - DimensionOrder to set.
        imageIndex - the Image index.
      • setPixelsID

        public void setPixelsID​(String id,
                                int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Pixels.
        Specified by:
        setPixelsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setPixelsInterleaved

        public void setPixelsInterleaved​(Boolean interleaved,
                                         int imageIndex)
        Description copied from interface: MetadataStore
        Set the Interleaved property of Pixels.
        Specified by:
        setPixelsInterleaved in interface MetadataStore
        Parameters:
        interleaved - Interleaved to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeX

        public void setPixelsPhysicalSizeX​(Length physicalSizeX,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeX property of Pixels.
        Specified by:
        setPixelsPhysicalSizeX in interface MetadataStore
        Parameters:
        physicalSizeX - PhysicalSizeX to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeY

        public void setPixelsPhysicalSizeY​(Length physicalSizeY,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeY property of Pixels.
        Specified by:
        setPixelsPhysicalSizeY in interface MetadataStore
        Parameters:
        physicalSizeY - PhysicalSizeY to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeZ

        public void setPixelsPhysicalSizeZ​(Length physicalSizeZ,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeZ property of Pixels.
        Specified by:
        setPixelsPhysicalSizeZ in interface MetadataStore
        Parameters:
        physicalSizeZ - PhysicalSizeZ to set.
        imageIndex - the Image index.
      • setPixelsSignificantBits

        public void setPixelsSignificantBits​(PositiveInteger significantBits,
                                             int imageIndex)
        Description copied from interface: MetadataStore
        Set the SignificantBits property of Pixels.
        Specified by:
        setPixelsSignificantBits in interface MetadataStore
        Parameters:
        significantBits - SignificantBits to set.
        imageIndex - the Image index.
      • setPixelsSizeC

        public void setPixelsSizeC​(PositiveInteger sizeC,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeC property of Pixels.
        Specified by:
        setPixelsSizeC in interface MetadataStore
        Parameters:
        sizeC - SizeC to set.
        imageIndex - the Image index.
      • setPixelsSizeT

        public void setPixelsSizeT​(PositiveInteger sizeT,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeT property of Pixels.
        Specified by:
        setPixelsSizeT in interface MetadataStore
        Parameters:
        sizeT - SizeT to set.
        imageIndex - the Image index.
      • setPixelsSizeX

        public void setPixelsSizeX​(PositiveInteger sizeX,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeX property of Pixels.
        Specified by:
        setPixelsSizeX in interface MetadataStore
        Parameters:
        sizeX - SizeX to set.
        imageIndex - the Image index.
      • setPixelsSizeY

        public void setPixelsSizeY​(PositiveInteger sizeY,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeY property of Pixels.
        Specified by:
        setPixelsSizeY in interface MetadataStore
        Parameters:
        sizeY - SizeY to set.
        imageIndex - the Image index.
      • setPixelsSizeZ

        public void setPixelsSizeZ​(PositiveInteger sizeZ,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeZ property of Pixels.
        Specified by:
        setPixelsSizeZ in interface MetadataStore
        Parameters:
        sizeZ - SizeZ to set.
        imageIndex - the Image index.
      • setPixelsTimeIncrement

        public void setPixelsTimeIncrement​(Time timeIncrement,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the TimeIncrement property of Pixels.
        Specified by:
        setPixelsTimeIncrement in interface MetadataStore
        Parameters:
        timeIncrement - TimeIncrement to set.
        imageIndex - the Image index.
      • setPixelsType

        public void setPixelsType​(PixelType type,
                                  int imageIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Pixels.
        Specified by:
        setPixelsType in interface MetadataStore
        Parameters:
        type - Type to set.
        imageIndex - the Image index.
      • setPlaneAnnotationRef

        public void setPlaneAnnotationRef​(String annotation,
                                          int imageIndex,
                                          int planeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Plane.
        Specified by:
        setPlaneAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlaneDeltaT

        public void setPlaneDeltaT​(Time deltaT,
                                   int imageIndex,
                                   int planeIndex)
        Description copied from interface: MetadataStore
        Set the DeltaT property of Plane.
        Specified by:
        setPlaneDeltaT in interface MetadataStore
        Parameters:
        deltaT - DeltaT to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneExposureTime

        public void setPlaneExposureTime​(Time exposureTime,
                                         int imageIndex,
                                         int planeIndex)
        Description copied from interface: MetadataStore
        Set the ExposureTime property of Plane.
        Specified by:
        setPlaneExposureTime in interface MetadataStore
        Parameters:
        exposureTime - ExposureTime to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneHashSHA1

        public void setPlaneHashSHA1​(String hashSHA1,
                                     int imageIndex,
                                     int planeIndex)
        Description copied from interface: MetadataStore
        Set the HashSHA1 property of Plane.
        Specified by:
        setPlaneHashSHA1 in interface MetadataStore
        Parameters:
        hashSHA1 - HashSHA1 to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionX

        public void setPlanePositionX​(Length positionX,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionX property of Plane.
        Specified by:
        setPlanePositionX in interface MetadataStore
        Parameters:
        positionX - PositionX to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionY

        public void setPlanePositionY​(Length positionY,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionY property of Plane.
        Specified by:
        setPlanePositionY in interface MetadataStore
        Parameters:
        positionY - PositionY to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionZ

        public void setPlanePositionZ​(Length positionZ,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionZ property of Plane.
        Specified by:
        setPlanePositionZ in interface MetadataStore
        Parameters:
        positionZ - PositionZ to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheC

        public void setPlaneTheC​(NonNegativeInteger theC,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Plane.
        Specified by:
        setPlaneTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheT

        public void setPlaneTheT​(NonNegativeInteger theT,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Plane.
        Specified by:
        setPlaneTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheZ

        public void setPlaneTheZ​(NonNegativeInteger theZ,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Plane.
        Specified by:
        setPlaneTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlateAnnotationRef

        public void setPlateAnnotationRef​(String annotation,
                                          int plateIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Plate.
        Specified by:
        setPlateAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlateColumnNamingConvention

        public void setPlateColumnNamingConvention​(NamingConvention columnNamingConvention,
                                                   int plateIndex)
        Description copied from interface: MetadataStore
        Set the ColumnNamingConvention property of Plate.
        Specified by:
        setPlateColumnNamingConvention in interface MetadataStore
        Parameters:
        columnNamingConvention - ColumnNamingConvention to set.
        plateIndex - the Plate index.
      • setPlateColumns

        public void setPlateColumns​(PositiveInteger columns,
                                    int plateIndex)
        Description copied from interface: MetadataStore
        Set the Columns property of Plate.
        Specified by:
        setPlateColumns in interface MetadataStore
        Parameters:
        columns - Columns to set.
        plateIndex - the Plate index.
      • setPlateDescription

        public void setPlateDescription​(String description,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Plate.
        Specified by:
        setPlateDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        plateIndex - the Plate index.
      • setPlateExternalIdentifier

        public void setPlateExternalIdentifier​(String externalIdentifier,
                                               int plateIndex)
        Description copied from interface: MetadataStore
        Set the ExternalIdentifier property of Plate.
        Specified by:
        setPlateExternalIdentifier in interface MetadataStore
        Parameters:
        externalIdentifier - ExternalIdentifier to set.
        plateIndex - the Plate index.
      • setPlateFieldIndex

        public void setPlateFieldIndex​(NonNegativeInteger fieldIndex,
                                       int plateIndex)
        Description copied from interface: MetadataStore
        Set the FieldIndex property of Plate.
        Specified by:
        setPlateFieldIndex in interface MetadataStore
        Parameters:
        fieldIndex - FieldIndex to set.
        plateIndex - the Plate index.
      • setPlateID

        public void setPlateID​(String id,
                               int plateIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Plate.
        Specified by:
        setPlateID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
      • setPlateName

        public void setPlateName​(String name,
                                 int plateIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Plate.
        Specified by:
        setPlateName in interface MetadataStore
        Parameters:
        name - Name to set.
        plateIndex - the Plate index.
      • setPlateRowNamingConvention

        public void setPlateRowNamingConvention​(NamingConvention rowNamingConvention,
                                                int plateIndex)
        Description copied from interface: MetadataStore
        Set the RowNamingConvention property of Plate.
        Specified by:
        setPlateRowNamingConvention in interface MetadataStore
        Parameters:
        rowNamingConvention - RowNamingConvention to set.
        plateIndex - the Plate index.
      • setPlateRows

        public void setPlateRows​(PositiveInteger rows,
                                 int plateIndex)
        Description copied from interface: MetadataStore
        Set the Rows property of Plate.
        Specified by:
        setPlateRows in interface MetadataStore
        Parameters:
        rows - Rows to set.
        plateIndex - the Plate index.
      • setPlateStatus

        public void setPlateStatus​(String status,
                                   int plateIndex)
        Description copied from interface: MetadataStore
        Set the Status property of Plate.
        Specified by:
        setPlateStatus in interface MetadataStore
        Parameters:
        status - Status to set.
        plateIndex - the Plate index.
      • setPlateWellOriginX

        public void setPlateWellOriginX​(Length wellOriginX,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the WellOriginX property of Plate.
        Specified by:
        setPlateWellOriginX in interface MetadataStore
        Parameters:
        wellOriginX - WellOriginX to set.
        plateIndex - the Plate index.
      • setPlateWellOriginY

        public void setPlateWellOriginY​(Length wellOriginY,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the WellOriginY property of Plate.
        Specified by:
        setPlateWellOriginY in interface MetadataStore
        Parameters:
        wellOriginY - WellOriginY to set.
        plateIndex - the Plate index.
      • setPlateAcquisitionAnnotationRef

        public void setPlateAcquisitionAnnotationRef​(String annotation,
                                                     int plateIndex,
                                                     int plateAcquisitionIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlateAcquisitionDescription

        public void setPlateAcquisitionDescription​(String description,
                                                   int plateIndex,
                                                   int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the Description property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionEndTime

        public void setPlateAcquisitionEndTime​(Timestamp endTime,
                                               int plateIndex,
                                               int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the EndTime property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionEndTime in interface MetadataStore
        Parameters:
        endTime - EndTime to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionID

        public void setPlateAcquisitionID​(String id,
                                          int plateIndex,
                                          int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the ID property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionMaximumFieldCount

        public void setPlateAcquisitionMaximumFieldCount​(PositiveInteger maximumFieldCount,
                                                         int plateIndex,
                                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the MaximumFieldCount property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionMaximumFieldCount in interface MetadataStore
        Parameters:
        maximumFieldCount - MaximumFieldCount to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionName

        public void setPlateAcquisitionName​(String name,
                                            int plateIndex,
                                            int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the Name property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionName in interface MetadataStore
        Parameters:
        name - Name to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionStartTime

        public void setPlateAcquisitionStartTime​(Timestamp startTime,
                                                 int plateIndex,
                                                 int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the StartTime property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionStartTime in interface MetadataStore
        Parameters:
        startTime - StartTime to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionWellSampleRef

        public void setPlateAcquisitionWellSampleRef​(String wellSample,
                                                     int plateIndex,
                                                     int plateAcquisitionIndex,
                                                     int wellSampleRefIndex)
        Description copied from interface: MetadataStore
        Set the WellSampleRef property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionWellSampleRef in interface MetadataStore
        Parameters:
        wellSample - WellSampleRef to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        wellSampleRefIndex - WellSampleRef index (unused).
      • setPointAnnotationRef

        public void setPointAnnotationRef​(String annotation,
                                          int ROIIndex,
                                          int shapeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Point.
        Specified by:
        setPointAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPointFillColor

        public void setPointFillColor​(Color fillColor,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Point.
        Specified by:
        setPointFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFillRule

        public void setPointFillRule​(FillRule fillRule,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Point.
        Specified by:
        setPointFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontFamily

        public void setPointFontFamily​(FontFamily fontFamily,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Point.
        Specified by:
        setPointFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontSize

        public void setPointFontSize​(Length fontSize,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Point.
        Specified by:
        setPointFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontStyle

        public void setPointFontStyle​(FontStyle fontStyle,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Point.
        Specified by:
        setPointFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointID

        public void setPointID​(String id,
                               int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Point.
        Specified by:
        setPointID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointLocked

        public void setPointLocked​(Boolean locked,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Point.
        Specified by:
        setPointLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeColor

        public void setPointStrokeColor​(Color strokeColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Point.
        Specified by:
        setPointStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeDashArray

        public void setPointStrokeDashArray​(String strokeDashArray,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Point.
        Specified by:
        setPointStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeWidth

        public void setPointStrokeWidth​(Length strokeWidth,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Point.
        Specified by:
        setPointStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointText

        public void setPointText​(String text,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Point.
        Specified by:
        setPointText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheC

        public void setPointTheC​(NonNegativeInteger theC,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Point.
        Specified by:
        setPointTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheT

        public void setPointTheT​(NonNegativeInteger theT,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Point.
        Specified by:
        setPointTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheZ

        public void setPointTheZ​(NonNegativeInteger theZ,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Point.
        Specified by:
        setPointTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTransform

        public void setPointTransform​(AffineTransform transform,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Point.
        Specified by:
        setPointTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointX

        public void setPointX​(Double x,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Point.
        Specified by:
        setPointX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointY

        public void setPointY​(Double y,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Point.
        Specified by:
        setPointY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonAnnotationRef

        public void setPolygonAnnotationRef​(String annotation,
                                            int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Polygon.
        Specified by:
        setPolygonAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPolygonFillColor

        public void setPolygonFillColor​(Color fillColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Polygon.
        Specified by:
        setPolygonFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFillRule

        public void setPolygonFillRule​(FillRule fillRule,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Polygon.
        Specified by:
        setPolygonFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontFamily

        public void setPolygonFontFamily​(FontFamily fontFamily,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Polygon.
        Specified by:
        setPolygonFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontSize

        public void setPolygonFontSize​(Length fontSize,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Polygon.
        Specified by:
        setPolygonFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontStyle

        public void setPolygonFontStyle​(FontStyle fontStyle,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Polygon.
        Specified by:
        setPolygonFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonID

        public void setPolygonID​(String id,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Polygon.
        Specified by:
        setPolygonID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonLocked

        public void setPolygonLocked​(Boolean locked,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Polygon.
        Specified by:
        setPolygonLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonPoints

        public void setPolygonPoints​(String points,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Points property of Polygon.
        Specified by:
        setPolygonPoints in interface MetadataStore
        Parameters:
        points - Points to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeColor

        public void setPolygonStrokeColor​(Color strokeColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Polygon.
        Specified by:
        setPolygonStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeDashArray

        public void setPolygonStrokeDashArray​(String strokeDashArray,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Polygon.
        Specified by:
        setPolygonStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeWidth

        public void setPolygonStrokeWidth​(Length strokeWidth,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Polygon.
        Specified by:
        setPolygonStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonText

        public void setPolygonText​(String text,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Polygon.
        Specified by:
        setPolygonText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheC

        public void setPolygonTheC​(NonNegativeInteger theC,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Polygon.
        Specified by:
        setPolygonTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheT

        public void setPolygonTheT​(NonNegativeInteger theT,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Polygon.
        Specified by:
        setPolygonTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheZ

        public void setPolygonTheZ​(NonNegativeInteger theZ,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Polygon.
        Specified by:
        setPolygonTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTransform

        public void setPolygonTransform​(AffineTransform transform,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Polygon.
        Specified by:
        setPolygonTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineAnnotationRef

        public void setPolylineAnnotationRef​(String annotation,
                                             int ROIIndex,
                                             int shapeIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Polyline.
        Specified by:
        setPolylineAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPolylineFillColor

        public void setPolylineFillColor​(Color fillColor,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Polyline.
        Specified by:
        setPolylineFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFillRule

        public void setPolylineFillRule​(FillRule fillRule,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Polyline.
        Specified by:
        setPolylineFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontFamily

        public void setPolylineFontFamily​(FontFamily fontFamily,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Polyline.
        Specified by:
        setPolylineFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontSize

        public void setPolylineFontSize​(Length fontSize,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Polyline.
        Specified by:
        setPolylineFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontStyle

        public void setPolylineFontStyle​(FontStyle fontStyle,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Polyline.
        Specified by:
        setPolylineFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineID

        public void setPolylineID​(String id,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Polyline.
        Specified by:
        setPolylineID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineLocked

        public void setPolylineLocked​(Boolean locked,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Polyline.
        Specified by:
        setPolylineLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineMarkerEnd

        public void setPolylineMarkerEnd​(Marker markerEnd,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerEnd property of Polyline.
        Specified by:
        setPolylineMarkerEnd in interface MetadataStore
        Parameters:
        markerEnd - MarkerEnd to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineMarkerStart

        public void setPolylineMarkerStart​(Marker markerStart,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerStart property of Polyline.
        Specified by:
        setPolylineMarkerStart in interface MetadataStore
        Parameters:
        markerStart - MarkerStart to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylinePoints

        public void setPolylinePoints​(String points,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Points property of Polyline.
        Specified by:
        setPolylinePoints in interface MetadataStore
        Parameters:
        points - Points to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeColor

        public void setPolylineStrokeColor​(Color strokeColor,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Polyline.
        Specified by:
        setPolylineStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeDashArray

        public void setPolylineStrokeDashArray​(String strokeDashArray,
                                               int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Polyline.
        Specified by:
        setPolylineStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeWidth

        public void setPolylineStrokeWidth​(Length strokeWidth,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Polyline.
        Specified by:
        setPolylineStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineText

        public void setPolylineText​(String text,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Polyline.
        Specified by:
        setPolylineText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheC

        public void setPolylineTheC​(NonNegativeInteger theC,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Polyline.
        Specified by:
        setPolylineTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheT

        public void setPolylineTheT​(NonNegativeInteger theT,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Polyline.
        Specified by:
        setPolylineTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheZ

        public void setPolylineTheZ​(NonNegativeInteger theZ,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Polyline.
        Specified by:
        setPolylineTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTransform

        public void setPolylineTransform​(AffineTransform transform,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Polyline.
        Specified by:
        setPolylineTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setProjectAnnotationRef

        public void setProjectAnnotationRef​(String annotation,
                                            int projectIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Project.
        Specified by:
        setProjectAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        projectIndex - the Project index.
        annotationRefIndex - AnnotationRef index (unused).
      • setProjectDatasetRef

        public void setProjectDatasetRef​(String dataset,
                                         int projectIndex,
                                         int datasetRefIndex)
        Description copied from interface: MetadataStore
        Set the DatasetRef property of Project.
        Specified by:
        setProjectDatasetRef in interface MetadataStore
        Parameters:
        dataset - DatasetRef to set.
        projectIndex - the Project index.
        datasetRefIndex - DatasetRef index (unused).
      • setProjectDescription

        public void setProjectDescription​(String description,
                                          int projectIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Project.
        Specified by:
        setProjectDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        projectIndex - the Project index.
      • setProjectExperimenterGroupRef

        public void setProjectExperimenterGroupRef​(String experimenterGroup,
                                                   int projectIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Project.
        Specified by:
        setProjectExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        projectIndex - the Project index.
      • setProjectExperimenterRef

        public void setProjectExperimenterRef​(String experimenter,
                                              int projectIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Project.
        Specified by:
        setProjectExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        projectIndex - the Project index.
      • setProjectID

        public void setProjectID​(String id,
                                 int projectIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Project.
        Specified by:
        setProjectID in interface MetadataStore
        Parameters:
        id - ID to set.
        projectIndex - the Project index.
      • setProjectName

        public void setProjectName​(String name,
                                   int projectIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Project.
        Specified by:
        setProjectName in interface MetadataStore
        Parameters:
        name - Name to set.
        projectIndex - the Project index.
      • setROIAnnotationRef

        public void setROIAnnotationRef​(String annotation,
                                        int ROIIndex,
                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ROI.
        Specified by:
        setROIAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        annotationRefIndex - AnnotationRef index (unused).
      • setROIDescription

        public void setROIDescription​(String description,
                                      int ROIIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ROI.
        Specified by:
        setROIDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        ROIIndex - the ROI index.
      • setROIID

        public void setROIID​(String id,
                             int ROIIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ROI.
        Specified by:
        setROIID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
      • setROIName

        public void setROIName​(String name,
                               int ROIIndex)
        Description copied from interface: MetadataStore
        Set the Name property of ROI.
        Specified by:
        setROIName in interface MetadataStore
        Parameters:
        name - Name to set.
        ROIIndex - the ROI index.
      • setReagentAnnotationRef

        public void setReagentAnnotationRef​(String annotation,
                                            int screenIndex,
                                            int reagentIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Reagent.
        Specified by:
        setReagentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        annotationRefIndex - AnnotationRef index (unused).
      • setReagentDescription

        public void setReagentDescription​(String description,
                                          int screenIndex,
                                          int reagentIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Reagent.
        Specified by:
        setReagentDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentID

        public void setReagentID​(String id,
                                 int screenIndex,
                                 int reagentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Reagent.
        Specified by:
        setReagentID in interface MetadataStore
        Parameters:
        id - ID to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentName

        public void setReagentName​(String name,
                                   int screenIndex,
                                   int reagentIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Reagent.
        Specified by:
        setReagentName in interface MetadataStore
        Parameters:
        name - Name to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentReagentIdentifier

        public void setReagentReagentIdentifier​(String reagentIdentifier,
                                                int screenIndex,
                                                int reagentIndex)
        Description copied from interface: MetadataStore
        Set the ReagentIdentifier property of Reagent.
        Specified by:
        setReagentReagentIdentifier in interface MetadataStore
        Parameters:
        reagentIdentifier - ReagentIdentifier to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setRectangleAnnotationRef

        public void setRectangleAnnotationRef​(String annotation,
                                              int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Rectangle.
        Specified by:
        setRectangleAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setRectangleFillColor

        public void setRectangleFillColor​(Color fillColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Rectangle.
        Specified by:
        setRectangleFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFillRule

        public void setRectangleFillRule​(FillRule fillRule,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Rectangle.
        Specified by:
        setRectangleFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontFamily

        public void setRectangleFontFamily​(FontFamily fontFamily,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Rectangle.
        Specified by:
        setRectangleFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontSize

        public void setRectangleFontSize​(Length fontSize,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Rectangle.
        Specified by:
        setRectangleFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontStyle

        public void setRectangleFontStyle​(FontStyle fontStyle,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Rectangle.
        Specified by:
        setRectangleFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleHeight

        public void setRectangleHeight​(Double height,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Height property of Rectangle.
        Specified by:
        setRectangleHeight in interface MetadataStore
        Parameters:
        height - Height to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleID

        public void setRectangleID​(String id,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Rectangle.
        Specified by:
        setRectangleID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleLocked

        public void setRectangleLocked​(Boolean locked,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Rectangle.
        Specified by:
        setRectangleLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeColor

        public void setRectangleStrokeColor​(Color strokeColor,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Rectangle.
        Specified by:
        setRectangleStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeDashArray

        public void setRectangleStrokeDashArray​(String strokeDashArray,
                                                int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Rectangle.
        Specified by:
        setRectangleStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeWidth

        public void setRectangleStrokeWidth​(Length strokeWidth,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Rectangle.
        Specified by:
        setRectangleStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleText

        public void setRectangleText​(String text,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Rectangle.
        Specified by:
        setRectangleText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheC

        public void setRectangleTheC​(NonNegativeInteger theC,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Rectangle.
        Specified by:
        setRectangleTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheT

        public void setRectangleTheT​(NonNegativeInteger theT,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Rectangle.
        Specified by:
        setRectangleTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheZ

        public void setRectangleTheZ​(NonNegativeInteger theZ,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Rectangle.
        Specified by:
        setRectangleTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTransform

        public void setRectangleTransform​(AffineTransform transform,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Rectangle.
        Specified by:
        setRectangleTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleWidth

        public void setRectangleWidth​(Double width,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Width property of Rectangle.
        Specified by:
        setRectangleWidth in interface MetadataStore
        Parameters:
        width - Width to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleX

        public void setRectangleX​(Double x,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Rectangle.
        Specified by:
        setRectangleX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleY

        public void setRectangleY​(Double y,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Rectangle.
        Specified by:
        setRectangleY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRightsRightsHeld

        public void setRightsRightsHeld​(String rightsHeld)
        Description copied from interface: MetadataStore
        Set the RightsHeld property of Rights.
        Specified by:
        setRightsRightsHeld in interface MetadataStore
        Parameters:
        rightsHeld - RightsHeld to set.
      • setRightsRightsHolder

        public void setRightsRightsHolder​(String rightsHolder)
        Description copied from interface: MetadataStore
        Set the RightsHolder property of Rights.
        Specified by:
        setRightsRightsHolder in interface MetadataStore
        Parameters:
        rightsHolder - RightsHolder to set.
      • setScreenAnnotationRef

        public void setScreenAnnotationRef​(String annotation,
                                           int screenIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Screen.
        Specified by:
        setScreenAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        screenIndex - the Screen index.
        annotationRefIndex - AnnotationRef index (unused).
      • setScreenDescription

        public void setScreenDescription​(String description,
                                         int screenIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Screen.
        Specified by:
        setScreenDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        screenIndex - the Screen index.
      • setScreenID

        public void setScreenID​(String id,
                                int screenIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Screen.
        Specified by:
        setScreenID in interface MetadataStore
        Parameters:
        id - ID to set.
        screenIndex - the Screen index.
      • setScreenName

        public void setScreenName​(String name,
                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Screen.
        Specified by:
        setScreenName in interface MetadataStore
        Parameters:
        name - Name to set.
        screenIndex - the Screen index.
      • setScreenPlateRef

        public void setScreenPlateRef​(String plate,
                                      int screenIndex,
                                      int plateRefIndex)
        Description copied from interface: MetadataStore
        Set the PlateRef property of Screen.
        Specified by:
        setScreenPlateRef in interface MetadataStore
        Parameters:
        plate - PlateRef to set.
        screenIndex - the Screen index.
        plateRefIndex - PlateRef index (unused).
      • setScreenProtocolDescription

        public void setScreenProtocolDescription​(String protocolDescription,
                                                 int screenIndex)
        Description copied from interface: MetadataStore
        Set the ProtocolDescription property of Screen.
        Specified by:
        setScreenProtocolDescription in interface MetadataStore
        Parameters:
        protocolDescription - ProtocolDescription to set.
        screenIndex - the Screen index.
      • setScreenProtocolIdentifier

        public void setScreenProtocolIdentifier​(String protocolIdentifier,
                                                int screenIndex)
        Description copied from interface: MetadataStore
        Set the ProtocolIdentifier property of Screen.
        Specified by:
        setScreenProtocolIdentifier in interface MetadataStore
        Parameters:
        protocolIdentifier - ProtocolIdentifier to set.
        screenIndex - the Screen index.
      • setScreenReagentSetDescription

        public void setScreenReagentSetDescription​(String reagentSetDescription,
                                                   int screenIndex)
        Description copied from interface: MetadataStore
        Set the ReagentSetDescription property of Screen.
        Specified by:
        setScreenReagentSetDescription in interface MetadataStore
        Parameters:
        reagentSetDescription - ReagentSetDescription to set.
        screenIndex - the Screen index.
      • setScreenReagentSetIdentifier

        public void setScreenReagentSetIdentifier​(String reagentSetIdentifier,
                                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the ReagentSetIdentifier property of Screen.
        Specified by:
        setScreenReagentSetIdentifier in interface MetadataStore
        Parameters:
        reagentSetIdentifier - ReagentSetIdentifier to set.
        screenIndex - the Screen index.
      • setScreenType

        public void setScreenType​(String type,
                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Screen.
        Specified by:
        setScreenType in interface MetadataStore
        Parameters:
        type - Type to set.
        screenIndex - the Screen index.
      • setStageLabelName

        public void setStageLabelName​(String name,
                                      int imageIndex)
        Description copied from interface: MetadataStore
        Set the Name property of StageLabel.
        Specified by:
        setStageLabelName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
      • setStageLabelX

        public void setStageLabelX​(Length x,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the X property of StageLabel.
        Specified by:
        setStageLabelX in interface MetadataStore
        Parameters:
        x - X to set.
        imageIndex - the Image index.
      • setStageLabelY

        public void setStageLabelY​(Length y,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the Y property of StageLabel.
        Specified by:
        setStageLabelY in interface MetadataStore
        Parameters:
        y - Y to set.
        imageIndex - the Image index.
      • setStageLabelZ

        public void setStageLabelZ​(Length z,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the Z property of StageLabel.
        Specified by:
        setStageLabelZ in interface MetadataStore
        Parameters:
        z - Z to set.
        imageIndex - the Image index.
      • setTagAnnotationAnnotationRef

        public void setTagAnnotationAnnotationRef​(String annotation,
                                                  int tagAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TagAnnotation.
        Specified by:
        setTagAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        tagAnnotationIndex - the TagAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTagAnnotationAnnotator

        public void setTagAnnotationAnnotator​(String annotator,
                                              int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TagAnnotation.
        Specified by:
        setTagAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationDescription

        public void setTagAnnotationDescription​(String description,
                                                int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TagAnnotation.
        Specified by:
        setTagAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationID

        public void setTagAnnotationID​(String id,
                                       int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TagAnnotation.
        Specified by:
        setTagAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationNamespace

        public void setTagAnnotationNamespace​(String namespace,
                                              int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TagAnnotation.
        Specified by:
        setTagAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationValue

        public void setTagAnnotationValue​(String value,
                                          int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TagAnnotation.
        Specified by:
        setTagAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTermAnnotationAnnotationRef

        public void setTermAnnotationAnnotationRef​(String annotation,
                                                   int termAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TermAnnotation.
        Specified by:
        setTermAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        termAnnotationIndex - the TermAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTermAnnotationAnnotator

        public void setTermAnnotationAnnotator​(String annotator,
                                               int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TermAnnotation.
        Specified by:
        setTermAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationDescription

        public void setTermAnnotationDescription​(String description,
                                                 int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TermAnnotation.
        Specified by:
        setTermAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationID

        public void setTermAnnotationID​(String id,
                                        int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TermAnnotation.
        Specified by:
        setTermAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationNamespace

        public void setTermAnnotationNamespace​(String namespace,
                                               int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TermAnnotation.
        Specified by:
        setTermAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationValue

        public void setTermAnnotationValue​(String value,
                                           int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TermAnnotation.
        Specified by:
        setTermAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTiffDataFirstC

        public void setTiffDataFirstC​(NonNegativeInteger firstC,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstC property of TiffData.
        Specified by:
        setTiffDataFirstC in interface MetadataStore
        Parameters:
        firstC - FirstC to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataFirstT

        public void setTiffDataFirstT​(NonNegativeInteger firstT,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstT property of TiffData.
        Specified by:
        setTiffDataFirstT in interface MetadataStore
        Parameters:
        firstT - FirstT to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataFirstZ

        public void setTiffDataFirstZ​(NonNegativeInteger firstZ,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstZ property of TiffData.
        Specified by:
        setTiffDataFirstZ in interface MetadataStore
        Parameters:
        firstZ - FirstZ to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataIFD

        public void setTiffDataIFD​(NonNegativeInteger ifd,
                                   int imageIndex,
                                   int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the IFD property of TiffData.
        Specified by:
        setTiffDataIFD in interface MetadataStore
        Parameters:
        ifd - IFD to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataPlaneCount

        public void setTiffDataPlaneCount​(NonNegativeInteger planeCount,
                                          int imageIndex,
                                          int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the PlaneCount property of TiffData.
        Specified by:
        setTiffDataPlaneCount in interface MetadataStore
        Parameters:
        planeCount - PlaneCount to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTimestampAnnotationAnnotationRef

        public void setTimestampAnnotationAnnotationRef​(String annotation,
                                                        int timestampAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTimestampAnnotationAnnotator

        public void setTimestampAnnotationAnnotator​(String annotator,
                                                    int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationDescription

        public void setTimestampAnnotationDescription​(String description,
                                                      int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationID

        public void setTimestampAnnotationID​(String id,
                                             int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationNamespace

        public void setTimestampAnnotationNamespace​(String namespace,
                                                    int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationValue

        public void setTimestampAnnotationValue​(Timestamp value,
                                                int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTransmittanceRangeCutIn

        public void setTransmittanceRangeCutIn​(Length cutIn,
                                               int instrumentIndex,
                                               int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutIn property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutIn in interface MetadataStore
        Parameters:
        cutIn - CutIn to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutInTolerance

        public void setTransmittanceRangeCutInTolerance​(Length cutInTolerance,
                                                        int instrumentIndex,
                                                        int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutInTolerance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutInTolerance in interface MetadataStore
        Parameters:
        cutInTolerance - CutInTolerance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutOut

        public void setTransmittanceRangeCutOut​(Length cutOut,
                                                int instrumentIndex,
                                                int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutOut property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutOut in interface MetadataStore
        Parameters:
        cutOut - CutOut to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutOutTolerance

        public void setTransmittanceRangeCutOutTolerance​(Length cutOutTolerance,
                                                         int instrumentIndex,
                                                         int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutOutTolerance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutOutTolerance in interface MetadataStore
        Parameters:
        cutOutTolerance - CutOutTolerance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeTransmittance

        public void setTransmittanceRangeTransmittance​(PercentFraction transmittance,
                                                       int instrumentIndex,
                                                       int filterIndex)
        Description copied from interface: MetadataStore
        Set the Transmittance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeTransmittance in interface MetadataStore
        Parameters:
        transmittance - Transmittance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setUUIDFileName

        public void setUUIDFileName​(String fileName,
                                    int imageIndex,
                                    int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FileName property of UUID.
        Specified by:
        setUUIDFileName in interface MetadataStore
        Parameters:
        fileName - FileName to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setWellAnnotationRef

        public void setWellAnnotationRef​(String annotation,
                                         int plateIndex,
                                         int wellIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Well.
        Specified by:
        setWellAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        annotationRefIndex - AnnotationRef index (unused).
      • setWellColor

        public void setWellColor​(Color color,
                                 int plateIndex,
                                 int wellIndex)
        Description copied from interface: MetadataStore
        Set the Color property of Well.
        Specified by:
        setWellColor in interface MetadataStore
        Parameters:
        color - Color to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellColumn

        public void setWellColumn​(NonNegativeInteger column,
                                  int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataStore
        Set the Column property of Well.
        Specified by:
        setWellColumn in interface MetadataStore
        Parameters:
        column - Column to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellExternalDescription

        public void setWellExternalDescription​(String externalDescription,
                                               int plateIndex,
                                               int wellIndex)
        Description copied from interface: MetadataStore
        Set the ExternalDescription property of Well.
        Specified by:
        setWellExternalDescription in interface MetadataStore
        Parameters:
        externalDescription - ExternalDescription to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellExternalIdentifier

        public void setWellExternalIdentifier​(String externalIdentifier,
                                              int plateIndex,
                                              int wellIndex)
        Description copied from interface: MetadataStore
        Set the ExternalIdentifier property of Well.
        Specified by:
        setWellExternalIdentifier in interface MetadataStore
        Parameters:
        externalIdentifier - ExternalIdentifier to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellID

        public void setWellID​(String id,
                              int plateIndex,
                              int wellIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Well.
        Specified by:
        setWellID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellReagentRef

        public void setWellReagentRef​(String reagent,
                                      int plateIndex,
                                      int wellIndex)
        Description copied from interface: MetadataStore
        Set the ReagentRef property of Well.
        Specified by:
        setWellReagentRef in interface MetadataStore
        Parameters:
        reagent - ReagentRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellRow

        public void setWellRow​(NonNegativeInteger row,
                               int plateIndex,
                               int wellIndex)
        Description copied from interface: MetadataStore
        Set the Row property of Well.
        Specified by:
        setWellRow in interface MetadataStore
        Parameters:
        row - Row to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellType

        public void setWellType​(String type,
                                int plateIndex,
                                int wellIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Well.
        Specified by:
        setWellType in interface MetadataStore
        Parameters:
        type - Type to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellSampleID

        public void setWellSampleID​(String id,
                                    int plateIndex,
                                    int wellIndex,
                                    int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the ID property of WellSample.
        Specified by:
        setWellSampleID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleImageRef

        public void setWellSampleImageRef​(String image,
                                          int plateIndex,
                                          int wellIndex,
                                          int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of WellSample.
        Specified by:
        setWellSampleImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleIndex

        public void setWellSampleIndex​(NonNegativeInteger index,
                                       int plateIndex,
                                       int wellIndex,
                                       int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the Index property of WellSample.
        Specified by:
        setWellSampleIndex in interface MetadataStore
        Parameters:
        index - Index to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSamplePositionX

        public void setWellSamplePositionX​(Length positionX,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the PositionX property of WellSample.
        Specified by:
        setWellSamplePositionX in interface MetadataStore
        Parameters:
        positionX - PositionX to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSamplePositionY

        public void setWellSamplePositionY​(Length positionY,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the PositionY property of WellSample.
        Specified by:
        setWellSamplePositionY in interface MetadataStore
        Parameters:
        positionY - PositionY to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleTimepoint

        public void setWellSampleTimepoint​(Timestamp timepoint,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the Timepoint property of WellSample.
        Specified by:
        setWellSampleTimepoint in interface MetadataStore
        Parameters:
        timepoint - Timepoint to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setXMLAnnotationAnnotationRef

        public void setXMLAnnotationAnnotationRef​(String annotation,
                                                  int XMLAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of XMLAnnotation.
        Specified by:
        setXMLAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        XMLAnnotationIndex - the XMLAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setXMLAnnotationAnnotator

        public void setXMLAnnotationAnnotator​(String annotator,
                                              int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of XMLAnnotation.
        Specified by:
        setXMLAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationDescription

        public void setXMLAnnotationDescription​(String description,
                                                int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of XMLAnnotation.
        Specified by:
        setXMLAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationID

        public void setXMLAnnotationID​(String id,
                                       int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of XMLAnnotation.
        Specified by:
        setXMLAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationNamespace

        public void setXMLAnnotationNamespace​(String namespace,
                                              int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of XMLAnnotation.
        Specified by:
        setXMLAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationValue

        public void setXMLAnnotationValue​(String value,
                                          int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of XMLAnnotation.
        Specified by:
        setXMLAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        XMLAnnotationIndex - the XMLAnnotation index.