Package ome.xml.model

Class Experimenter

    • Constructor Detail

      • Experimenter

        public Experimenter()
        Default constructor.
      • Experimenter

        public Experimenter​(Element element,
                            OMEModel model)
                     throws EnumerationException
        Constructs Experimenter recursively from an XML DOM tree.
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • Experimenter

        public Experimenter​(Experimenter orig)
        Copy constructor.
    • Method Detail

      • update

        public void update​(Element element,
                           OMEModel model)
                    throws EnumerationException
        Updates Experimenter recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.
        Specified by:
        update in interface OMEModelObject
        Overrides:
        update in class AbstractOMEModelObject
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • link

        public boolean link​(Reference reference,
                            OMEModelObject o)
        Description copied from interface: OMEModelObject
        Link a given OME model object to this model object.
        Specified by:
        link in interface OMEModelObject
        Overrides:
        link in class AbstractOMEModelObject
        Parameters:
        reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.
        o - Model object to link to.
        Returns:
        true if this model object was able to handle the reference, false otherwise.
      • getID

        public String getID()
      • setID

        public void setID​(String id)
      • getFirstName

        public String getFirstName()
      • setFirstName

        public void setFirstName​(String firstName)
      • getMiddleName

        public String getMiddleName()
      • setMiddleName

        public void setMiddleName​(String middleName)
      • getLastName

        public String getLastName()
      • setLastName

        public void setLastName​(String lastName)
      • getEmail

        public String getEmail()
      • setEmail

        public void setEmail​(String email)
      • getInstitution

        public String getInstitution()
      • setInstitution

        public void setInstitution​(String institution)
      • getUserName

        public String getUserName()
      • setUserName

        public void setUserName​(String userName)
      • sizeOfLinkedAnnotationList

        public int sizeOfLinkedAnnotationList()
      • copyLinkedAnnotationList

        public List<Annotation> copyLinkedAnnotationList()
      • getLinkedAnnotation

        public Annotation getLinkedAnnotation​(int index)
      • linkAnnotation

        public boolean linkAnnotation​(Annotation o)
      • unlinkAnnotation

        public boolean unlinkAnnotation​(Annotation o)
      • sizeOfLinkedImageList

        public int sizeOfLinkedImageList()
      • copyLinkedImageList

        public List<Image> copyLinkedImageList()
      • getLinkedImage

        public Image getLinkedImage​(int index)
      • setLinkedImage

        public Image setLinkedImage​(int index,
                                    Image o)
      • linkImage

        public boolean linkImage​(Image o)
      • unlinkImage

        public boolean unlinkImage​(Image o)
      • sizeOfLinkedMicrobeamManipulationList

        public int sizeOfLinkedMicrobeamManipulationList()
      • getLinkedMicrobeamManipulation

        public MicrobeamManipulation getLinkedMicrobeamManipulation​(int index)
      • sizeOfLinkedProjectList

        public int sizeOfLinkedProjectList()
      • copyLinkedProjectList

        public List<Project> copyLinkedProjectList()
      • getLinkedProject

        public Project getLinkedProject​(int index)
      • setLinkedProject

        public Project setLinkedProject​(int index,
                                        Project o)
      • linkProject

        public boolean linkProject​(Project o)
      • unlinkProject

        public boolean unlinkProject​(Project o)
      • sizeOfLinkedExperimenterGroupList

        public int sizeOfLinkedExperimenterGroupList()
      • getLinkedExperimenterGroup

        public ExperimenterGroup getLinkedExperimenterGroup​(int index)
      • linkExperimenterGroup

        public boolean linkExperimenterGroup​(ExperimenterGroup o)
      • unlinkExperimenterGroup

        public boolean unlinkExperimenterGroup​(ExperimenterGroup o)
      • sizeOfLinkedDatasetList

        public int sizeOfLinkedDatasetList()
      • copyLinkedDatasetList

        public List<Dataset> copyLinkedDatasetList()
      • getLinkedDataset

        public Dataset getLinkedDataset​(int index)
      • setLinkedDataset

        public Dataset setLinkedDataset​(int index,
                                        Dataset o)
      • linkDataset

        public boolean linkDataset​(Dataset o)
      • unlinkDataset

        public boolean unlinkDataset​(Dataset o)
      • sizeOfLinkedExperimentList

        public int sizeOfLinkedExperimentList()
      • copyLinkedExperimentList

        public List<Experiment> copyLinkedExperimentList()
      • getLinkedExperiment

        public Experiment getLinkedExperiment​(int index)
      • linkExperiment

        public boolean linkExperiment​(Experiment o)
      • unlinkExperiment

        public boolean unlinkExperiment​(Experiment o)
      • asXMLElement

        public Element asXMLElement​(Document document,
                                    Element Experimenter_element)
        Description copied from class: AbstractOMEModelObject
        Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
        Overrides:
        asXMLElement in class AbstractOMEModelObject
        Parameters:
        document - Destination document for element creation, etc.
        Experimenter_element - Element from the subclass. If null a new element will be created of this class.
        Returns:
        element populated with properties from this class.