Package ome.xml.model
Class Image
- java.lang.Object
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- ome.xml.model.AbstractOMEModelObject
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- ome.xml.model.Image
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- All Implemented Interfaces:
OMEModelObject
public class Image extends AbstractOMEModelObject
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Method Summary
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Methods inherited from class ome.xml.model.AbstractOMEModelObject
getChildrenByTagName, stripNamespacePrefix
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Field Detail
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NAMESPACE
public static final String NAMESPACE
- See Also:
- Constant Field Values
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Constructor Detail
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Image
public Image()
Default constructor.
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Image
public Image(Element element, OMEModel model) throws EnumerationException
Constructs Image recursively from an XML DOM tree.- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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Image
public Image(Image orig)
Copy constructor.
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Method Detail
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update
public void update(Element element, OMEModel model) throws EnumerationException
Updates Image recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.- Specified by:
update
in interfaceOMEModelObject
- Overrides:
update
in classAbstractOMEModelObject
- Parameters:
element
- Root of the XML DOM tree to construct a model object graph from.model
- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException
- If there is an error instantiating an enumeration during model object creation.
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link
public boolean link(Reference reference, OMEModelObject o)
Description copied from interface:OMEModelObject
Link a given OME model object to this model object.- Specified by:
link
in interfaceOMEModelObject
- Overrides:
link
in classAbstractOMEModelObject
- Parameters:
reference
- The type qualifier for the reference. This should be the corresponding reference type foro
. If, for example,o
is of typeImage
,reference
MUST be of typeImageRef
.o
- Model object to link to.- Returns:
true
if this model object was able to handle the reference,false
otherwise.
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getID
public String getID()
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setID
public void setID(String id)
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getName
public String getName()
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setName
public void setName(String name)
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getAcquisitionDate
public Timestamp getAcquisitionDate()
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setAcquisitionDate
public void setAcquisitionDate(Timestamp acquisitionDate)
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getLinkedExperimenter
public Experimenter getLinkedExperimenter()
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linkExperimenter
public void linkExperimenter(Experimenter o)
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unlinkExperimenter
public void unlinkExperimenter(Experimenter o)
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getDescription
public String getDescription()
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setDescription
public void setDescription(String description)
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getLinkedExperiment
public Experiment getLinkedExperiment()
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linkExperiment
public void linkExperiment(Experiment o)
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unlinkExperiment
public void unlinkExperiment(Experiment o)
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getLinkedExperimenterGroup
public ExperimenterGroup getLinkedExperimenterGroup()
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linkExperimenterGroup
public void linkExperimenterGroup(ExperimenterGroup o)
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unlinkExperimenterGroup
public void unlinkExperimenterGroup(ExperimenterGroup o)
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getLinkedInstrument
public Instrument getLinkedInstrument()
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linkInstrument
public void linkInstrument(Instrument o)
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unlinkInstrument
public void unlinkInstrument(Instrument o)
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getObjectiveSettings
public ObjectiveSettings getObjectiveSettings()
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setObjectiveSettings
public void setObjectiveSettings(ObjectiveSettings objectiveSettings)
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getImagingEnvironment
public ImagingEnvironment getImagingEnvironment()
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setImagingEnvironment
public void setImagingEnvironment(ImagingEnvironment imagingEnvironment)
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getStageLabel
public StageLabel getStageLabel()
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setStageLabel
public void setStageLabel(StageLabel stageLabel)
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getPixels
public Pixels getPixels()
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setPixels
public void setPixels(Pixels pixels)
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sizeOfLinkedROIList
public int sizeOfLinkedROIList()
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getLinkedROI
public ROI getLinkedROI(int index)
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linkROI
public boolean linkROI(ROI o)
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unlinkROI
public boolean unlinkROI(ROI o)
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sizeOfLinkedMicrobeamManipulationList
public int sizeOfLinkedMicrobeamManipulationList()
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copyLinkedMicrobeamManipulationList
public List<MicrobeamManipulation> copyLinkedMicrobeamManipulationList()
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getLinkedMicrobeamManipulation
public MicrobeamManipulation getLinkedMicrobeamManipulation(int index)
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setLinkedMicrobeamManipulation
public MicrobeamManipulation setLinkedMicrobeamManipulation(int index, MicrobeamManipulation o)
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linkMicrobeamManipulation
public boolean linkMicrobeamManipulation(MicrobeamManipulation o)
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unlinkMicrobeamManipulation
public boolean unlinkMicrobeamManipulation(MicrobeamManipulation o)
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sizeOfLinkedAnnotationList
public int sizeOfLinkedAnnotationList()
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copyLinkedAnnotationList
public List<Annotation> copyLinkedAnnotationList()
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getLinkedAnnotation
public Annotation getLinkedAnnotation(int index)
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setLinkedAnnotation
public Annotation setLinkedAnnotation(int index, Annotation o)
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linkAnnotation
public boolean linkAnnotation(Annotation o)
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unlinkAnnotation
public boolean unlinkAnnotation(Annotation o)
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sizeOfLinkedDatasetList
public int sizeOfLinkedDatasetList()
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getLinkedDataset
public Dataset getLinkedDataset(int index)
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linkDataset
public boolean linkDataset(Dataset o)
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unlinkDataset
public boolean unlinkDataset(Dataset o)
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sizeOfLinkedFolderList
public int sizeOfLinkedFolderList()
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getLinkedFolder
public Folder getLinkedFolder(int index)
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linkFolder
public boolean linkFolder(Folder o)
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unlinkFolder
public boolean unlinkFolder(Folder o)
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sizeOfLinkedWellSampleList
public int sizeOfLinkedWellSampleList()
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copyLinkedWellSampleList
public List<WellSample> copyLinkedWellSampleList()
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getLinkedWellSample
public WellSample getLinkedWellSample(int index)
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setLinkedWellSample
public WellSample setLinkedWellSample(int index, WellSample o)
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linkWellSample
public boolean linkWellSample(WellSample o)
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unlinkWellSample
public boolean unlinkWellSample(WellSample o)
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asXMLElement
public Element asXMLElement(Document document)
Description copied from interface:OMEModelObject
Takes the entire object hierarchy and produces an XML DOM tree.- Specified by:
asXMLElement
in interfaceOMEModelObject
- Specified by:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.- Returns:
- XML DOM tree root element for this model object.
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asXMLElement
public Element asXMLElement(Document document, Element Image_element)
Description copied from class:AbstractOMEModelObject
Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.- Overrides:
asXMLElement
in classAbstractOMEModelObject
- Parameters:
document
- Destination document for element creation, etc.Image_element
- Element from the subclass. Ifnull
a new element will be created of this class.- Returns:
element
populated with properties from this class.
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