Package ome.xml.meta

Class DummyMetadata

    • Constructor Detail

      • DummyMetadata

        public DummyMetadata()
    • Method Detail

      • createRoot

        public void createRoot()
        Description copied from interface: MetadataStore
        Create root node. The action taken here is specific to the concrete metadata implementation.
        Specified by:
        createRoot in interface MetadataStore
      • getRoot

        public MetadataRoot getRoot()
        Description copied from interface: MetadataStore
        Get the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation.
        Specified by:
        getRoot in interface MetadataStore
        Returns:
        the root node.
      • setRoot

        public void setRoot​(MetadataRoot root)
        Description copied from interface: MetadataStore
        Set the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation. An exception will be thrown if the root node is of an incompatible type.
        Specified by:
        setRoot in interface MetadataStore
        Parameters:
        root - the root node.
      • getBooleanAnnotationAnnotationCount

        public int getBooleanAnnotationAnnotationCount​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a BooleanAnnotation. This method returns the number of references to the specified BooleanAnnotation held by all model objects.
        Specified by:
        getBooleanAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the number of BooleanAnnotation links.
      • getCommentAnnotationAnnotationCount

        public int getCommentAnnotationAnnotationCount​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a CommentAnnotation. This method returns the number of references to the specified CommentAnnotation held by all model objects.
        Specified by:
        getCommentAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the number of CommentAnnotation links.
      • getDoubleAnnotationAnnotationCount

        public int getDoubleAnnotationAnnotationCount​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a DoubleAnnotation. This method returns the number of references to the specified DoubleAnnotation held by all model objects.
        Specified by:
        getDoubleAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the number of DoubleAnnotation links.
      • getFileAnnotationAnnotationCount

        public int getFileAnnotationAnnotationCount​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a FileAnnotation. This method returns the number of references to the specified FileAnnotation held by all model objects.
        Specified by:
        getFileAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the number of FileAnnotation links.
      • getListAnnotationAnnotationCount

        public int getListAnnotationAnnotationCount​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a ListAnnotation. This method returns the number of references to the specified ListAnnotation held by all model objects.
        Specified by:
        getListAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the number of ListAnnotation links.
      • getLongAnnotationAnnotationCount

        public int getLongAnnotationAnnotationCount​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a LongAnnotation. This method returns the number of references to the specified LongAnnotation held by all model objects.
        Specified by:
        getLongAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the number of LongAnnotation links.
      • getMapAnnotationAnnotationCount

        public int getMapAnnotationAnnotationCount​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a MapAnnotation. This method returns the number of references to the specified MapAnnotation held by all model objects.
        Specified by:
        getMapAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the number of MapAnnotation links.
      • getTagAnnotationAnnotationCount

        public int getTagAnnotationAnnotationCount​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TagAnnotation. This method returns the number of references to the specified TagAnnotation held by all model objects.
        Specified by:
        getTagAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the number of TagAnnotation links.
      • getTermAnnotationAnnotationCount

        public int getTermAnnotationAnnotationCount​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TermAnnotation. This method returns the number of references to the specified TermAnnotation held by all model objects.
        Specified by:
        getTermAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the number of TermAnnotation links.
      • getTimestampAnnotationAnnotationCount

        public int getTimestampAnnotationAnnotationCount​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to a TimestampAnnotation. This method returns the number of references to the specified TimestampAnnotation held by all model objects.
        Specified by:
        getTimestampAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the number of TimestampAnnotation links.
      • getXMLAnnotationAnnotationCount

        public int getXMLAnnotationAnnotationCount​(int xmlAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of links to an XMLAnnotation. This method returns the number of references to the specified XMLAnnotation held by all model objects.
        Specified by:
        getXMLAnnotationAnnotationCount in interface MetadataRetrieve
        Parameters:
        xmlAnnotationIndex - the XMLAnnotation index.
        Returns:
        the number of XMLAnnotation links.
      • getLightSourceType

        public String getLightSourceType​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the type of a LightSource.
        Specified by:
        getLightSourceType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LightSource type.
      • getLightSourceCount

        public int getLightSourceCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of LightSource elements.
        Specified by:
        getLightSourceCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of LightSource elements.
      • getShapeType

        public String getShapeType​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the type of a Shape.
        Specified by:
        getShapeType in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Shape type.
      • getShapeCount

        public int getShapeCount​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Shape elements.
        Specified by:
        getShapeCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the number of Shape elements.
      • getChannelAnnotationRefCount

        public int getChannelAnnotationRefCount​(int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Channel.
        Specified by:
        getChannelAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of AnnotationRef elements.
      • getDatasetAnnotationRefCount

        public int getDatasetAnnotationRefCount​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Dataset.
        Specified by:
        getDatasetAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the number of AnnotationRef elements.
      • getDetectorAnnotationRefCount

        public int getDetectorAnnotationRefCount​(int instrumentIndex,
                                                 int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Detector.
        Specified by:
        getDetectorAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the number of AnnotationRef elements.
      • getDichroicAnnotationRefCount

        public int getDichroicAnnotationRefCount​(int instrumentIndex,
                                                 int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Dichroic.
        Specified by:
        getDichroicAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the number of AnnotationRef elements.
      • getExperimenterAnnotationRefCount

        public int getExperimenterAnnotationRefCount​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Experimenter.
        Specified by:
        getExperimenterAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the number of AnnotationRef elements.
      • getExperimenterGroupAnnotationRefCount

        public int getExperimenterGroupAnnotationRefCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in ExperimenterGroup.
        Specified by:
        getExperimenterGroupAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of AnnotationRef elements.
      • getFilterAnnotationRefCount

        public int getFilterAnnotationRefCount​(int instrumentIndex,
                                               int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Filter.
        Specified by:
        getFilterAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the number of AnnotationRef elements.
      • getFolderAnnotationRefCount

        public int getFolderAnnotationRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Folder.
        Specified by:
        getFolderAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of AnnotationRef elements.
      • getImageAnnotationRefCount

        public int getImageAnnotationRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Image.
        Specified by:
        getImageAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of AnnotationRef elements.
      • getInstrumentAnnotationRefCount

        public int getInstrumentAnnotationRefCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Instrument.
        Specified by:
        getInstrumentAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of AnnotationRef elements.
      • getLightPathAnnotationRefCount

        public int getLightPathAnnotationRefCount​(int imageIndex,
                                                  int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in LightPath.
        Specified by:
        getLightPathAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of AnnotationRef elements.
      • getLightSourceAnnotationRefCount

        public int getLightSourceAnnotationRefCount​(int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in LightSource.
        Specified by:
        getLightSourceAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the number of AnnotationRef elements.
      • getObjectiveAnnotationRefCount

        public int getObjectiveAnnotationRefCount​(int instrumentIndex,
                                                  int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Objective.
        Specified by:
        getObjectiveAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the number of AnnotationRef elements.
      • getPlaneAnnotationRefCount

        public int getPlaneAnnotationRefCount​(int imageIndex,
                                              int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Plane.
        Specified by:
        getPlaneAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the number of AnnotationRef elements.
      • getPlateAnnotationRefCount

        public int getPlateAnnotationRefCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Plate.
        Specified by:
        getPlateAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of AnnotationRef elements.
      • getPlateAcquisitionAnnotationRefCount

        public int getPlateAcquisitionAnnotationRefCount​(int plateIndex,
                                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in PlateAcquisition.
        Specified by:
        getPlateAcquisitionAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the number of AnnotationRef elements.
      • getProjectAnnotationRefCount

        public int getProjectAnnotationRefCount​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Project.
        Specified by:
        getProjectAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the number of AnnotationRef elements.
      • getROIAnnotationRefCount

        public int getROIAnnotationRefCount​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in ROI.
        Specified by:
        getROIAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the number of AnnotationRef elements.
      • getReagentAnnotationRefCount

        public int getReagentAnnotationRefCount​(int screenIndex,
                                                int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Reagent.
        Specified by:
        getReagentAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the number of AnnotationRef elements.
      • getScreenAnnotationRefCount

        public int getScreenAnnotationRefCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Screen.
        Specified by:
        getScreenAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of AnnotationRef elements.
      • getShapeAnnotationRefCount

        public int getShapeAnnotationRefCount​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Shape.
        Specified by:
        getShapeAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the number of AnnotationRef elements.
      • getWellAnnotationRefCount

        public int getWellAnnotationRefCount​(int plateIndex,
                                             int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of AnnotationRef elements in Well.
        Specified by:
        getWellAnnotationRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the number of AnnotationRef elements.
      • getPixelsBinDataCount

        public int getPixelsBinDataCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of BinData elements in Pixels.
        Specified by:
        getPixelsBinDataCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of BinData elements.
      • getBooleanAnnotationCount

        public int getBooleanAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of BooleanAnnotation elements.
        Specified by:
        getBooleanAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of BooleanAnnotation elements.
      • getChannelCount

        public int getChannelCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Channel elements.
        Specified by:
        getChannelCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of Channel elements.
      • getCommentAnnotationCount

        public int getCommentAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of CommentAnnotation elements.
        Specified by:
        getCommentAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of CommentAnnotation elements.
      • getDatasetCount

        public int getDatasetCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Dataset elements.
        Specified by:
        getDatasetCount in interface MetadataRetrieve
        Returns:
        the number of Dataset elements.
      • getDatasetRefCount

        public int getDatasetRefCount​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of DatasetRef elements.
        Specified by:
        getDatasetRefCount in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the number of DatasetRef elements.
      • getDetectorCount

        public int getDetectorCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Detector elements.
        Specified by:
        getDetectorCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Detector elements.
      • getDichroicCount

        public int getDichroicCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Dichroic elements.
        Specified by:
        getDichroicCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Dichroic elements.
      • getDoubleAnnotationCount

        public int getDoubleAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of DoubleAnnotation elements.
        Specified by:
        getDoubleAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of DoubleAnnotation elements.
      • getFilterSetEmissionFilterRefCount

        public int getFilterSetEmissionFilterRefCount​(int instrumentIndex,
                                                      int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of EmissionFilterRef elements in FilterSet.
        Specified by:
        getFilterSetEmissionFilterRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the number of EmissionFilterRef elements.
      • getLightPathEmissionFilterRefCount

        public int getLightPathEmissionFilterRefCount​(int imageIndex,
                                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of EmissionFilterRef elements in LightPath.
        Specified by:
        getLightPathEmissionFilterRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of EmissionFilterRef elements.
      • getFilterSetExcitationFilterRefCount

        public int getFilterSetExcitationFilterRefCount​(int instrumentIndex,
                                                        int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExcitationFilterRef elements in FilterSet.
        Specified by:
        getFilterSetExcitationFilterRefCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the number of ExcitationFilterRef elements.
      • getLightPathExcitationFilterRefCount

        public int getLightPathExcitationFilterRefCount​(int imageIndex,
                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExcitationFilterRef elements in LightPath.
        Specified by:
        getLightPathExcitationFilterRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the number of ExcitationFilterRef elements.
      • getExperimentCount

        public int getExperimentCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Experiment elements.
        Specified by:
        getExperimentCount in interface MetadataRetrieve
        Returns:
        the number of Experiment elements.
      • getExperimenterCount

        public int getExperimenterCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Experimenter elements.
        Specified by:
        getExperimenterCount in interface MetadataRetrieve
        Returns:
        the number of Experimenter elements.
      • getExperimenterGroupCount

        public int getExperimenterGroupCount()
        Description copied from interface: MetadataRetrieve
        Get the number of ExperimenterGroup elements.
        Specified by:
        getExperimenterGroupCount in interface MetadataRetrieve
        Returns:
        the number of ExperimenterGroup elements.
      • getExperimenterGroupExperimenterRefCount

        public int getExperimenterGroupExperimenterRefCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ExperimenterRef elements in ExperimenterGroup.
        Specified by:
        getExperimenterGroupExperimenterRefCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of ExperimenterRef elements.
      • getFileAnnotationCount

        public int getFileAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of FileAnnotation elements.
        Specified by:
        getFileAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of FileAnnotation elements.
      • getFilterCount

        public int getFilterCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Filter elements.
        Specified by:
        getFilterCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Filter elements.
      • getFilterSetCount

        public int getFilterSetCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of FilterSet elements.
        Specified by:
        getFilterSetCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of FilterSet elements.
      • getFolderCount

        public int getFolderCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Folder elements.
        Specified by:
        getFolderCount in interface MetadataRetrieve
        Returns:
        the number of Folder elements.
      • getFolderRefCount

        public int getFolderRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of FolderRef elements.
        Specified by:
        getFolderRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of FolderRef elements.
      • getImageCount

        public int getImageCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Image elements.
        Specified by:
        getImageCount in interface MetadataRetrieve
        Returns:
        the number of Image elements.
      • getDatasetImageRefCount

        public int getDatasetImageRefCount​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ImageRef elements in Dataset.
        Specified by:
        getDatasetImageRefCount in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the number of ImageRef elements.
      • getFolderImageRefCount

        public int getFolderImageRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ImageRef elements in Folder.
        Specified by:
        getFolderImageRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of ImageRef elements.
      • getInstrumentCount

        public int getInstrumentCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Instrument elements.
        Specified by:
        getInstrumentCount in interface MetadataRetrieve
        Returns:
        the number of Instrument elements.
      • getLeaderCount

        public int getLeaderCount​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Leader elements.
        Specified by:
        getLeaderCount in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the number of Leader elements.
      • getMicrobeamManipulationLightSourceSettingsCount

        public int getMicrobeamManipulationLightSourceSettingsCount​(int experimentIndex,
                                                                    int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of LightSourceSettings elements in MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the number of LightSourceSettings elements.
      • getListAnnotationCount

        public int getListAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of ListAnnotation elements.
        Specified by:
        getListAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of ListAnnotation elements.
      • getLongAnnotationCount

        public int getLongAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of LongAnnotation elements.
        Specified by:
        getLongAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of LongAnnotation elements.
      • getMapAnnotationCount

        public int getMapAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of MapAnnotation elements.
        Specified by:
        getMapAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of MapAnnotation elements.
      • getMicrobeamManipulationCount

        public int getMicrobeamManipulationCount​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of MicrobeamManipulation elements.
        Specified by:
        getMicrobeamManipulationCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the number of MicrobeamManipulation elements.
      • getMicrobeamManipulationRefCount

        public int getMicrobeamManipulationRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of MicrobeamManipulationRef elements.
        Specified by:
        getMicrobeamManipulationRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of MicrobeamManipulationRef elements.
      • getObjectiveCount

        public int getObjectiveCount​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Objective elements.
        Specified by:
        getObjectiveCount in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the number of Objective elements.
      • getPlaneCount

        public int getPlaneCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Plane elements.
        Specified by:
        getPlaneCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of Plane elements.
      • getPlateCount

        public int getPlateCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Plate elements.
        Specified by:
        getPlateCount in interface MetadataRetrieve
        Returns:
        the number of Plate elements.
      • getPlateAcquisitionCount

        public int getPlateAcquisitionCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of PlateAcquisition elements.
        Specified by:
        getPlateAcquisitionCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of PlateAcquisition elements.
      • getPlateRefCount

        public int getPlateRefCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of PlateRef elements.
        Specified by:
        getPlateRefCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of PlateRef elements.
      • getProjectCount

        public int getProjectCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Project elements.
        Specified by:
        getProjectCount in interface MetadataRetrieve
        Returns:
        the number of Project elements.
      • getROICount

        public int getROICount()
        Description copied from interface: MetadataRetrieve
        Get the number of ROI elements.
        Specified by:
        getROICount in interface MetadataRetrieve
        Returns:
        the number of ROI elements.
      • getFolderROIRefCount

        public int getFolderROIRefCount​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in Folder.
        Specified by:
        getFolderROIRefCount in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the number of ROIRef elements.
      • getImageROIRefCount

        public int getImageROIRefCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in Image.
        Specified by:
        getImageROIRefCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of ROIRef elements.
      • getMicrobeamManipulationROIRefCount

        public int getMicrobeamManipulationROIRefCount​(int experimentIndex,
                                                       int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of ROIRef elements in MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationROIRefCount in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the number of ROIRef elements.
      • getReagentCount

        public int getReagentCount​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Reagent elements.
        Specified by:
        getReagentCount in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the number of Reagent elements.
      • getScreenCount

        public int getScreenCount()
        Description copied from interface: MetadataRetrieve
        Get the number of Screen elements.
        Specified by:
        getScreenCount in interface MetadataRetrieve
        Returns:
        the number of Screen elements.
      • getTagAnnotationCount

        public int getTagAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TagAnnotation elements.
        Specified by:
        getTagAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TagAnnotation elements.
      • getTermAnnotationCount

        public int getTermAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TermAnnotation elements.
        Specified by:
        getTermAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TermAnnotation elements.
      • getTiffDataCount

        public int getTiffDataCount​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of TiffData elements.
        Specified by:
        getTiffDataCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the number of TiffData elements.
      • getTimestampAnnotationCount

        public int getTimestampAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of TimestampAnnotation elements.
        Specified by:
        getTimestampAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of TimestampAnnotation elements.
      • setUUIDValue

        public void setUUIDValue​(String value,
                                 int imageIndex,
                                 int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the text value of UUID.
        Specified by:
        setUUIDValue in interface MetadataStore
        Parameters:
        value - text value.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • getUUIDValue

        public String getUUIDValue​(int imageIndex,
                                   int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the text value of UUID.
        Specified by:
        getUUIDValue in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the text value.
      • getWellCount

        public int getWellCount​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of Well elements.
        Specified by:
        getWellCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the number of Well elements.
      • getWellSampleCount

        public int getWellSampleCount​(int plateIndex,
                                      int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of WellSample elements.
        Specified by:
        getWellSampleCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the number of WellSample elements.
      • getWellSampleRefCount

        public int getWellSampleRefCount​(int plateIndex,
                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the number of WellSampleRef elements.
        Specified by:
        getWellSampleRefCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the number of WellSampleRef elements.
      • getXMLAnnotationCount

        public int getXMLAnnotationCount()
        Description copied from interface: MetadataRetrieve
        Get the number of XMLAnnotation elements.
        Specified by:
        getXMLAnnotationCount in interface MetadataRetrieve
        Returns:
        the number of XMLAnnotation elements.
      • getUUID

        public String getUUID()
        Gets the UUID associated with this collection of metadata.
        Specified by:
        getUUID in interface MetadataRetrieve
        Returns:
        the UUID.
      • getMapAnnotationValue

        public List<MapPair> getMapAnnotationValue​(int mapAnnotationIndex)
        Gets the Map value associated with this annotation
        Specified by:
        getMapAnnotationValue in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the MapAnnotation values.
      • getGenericExcitationSourceMap

        public List<MapPair> getGenericExcitationSourceMap​(int instrumentIndex,
                                                           int lightSourceIndex)
        Gets the Map value associated with this generic light source
        Specified by:
        getGenericExcitationSourceMap in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the MapAnnotation values.
      • getImagingEnvironmentMap

        public List<MapPair> getImagingEnvironmentMap​(int imageIndex)
        Gets the Map value associated with this imaging environment
        Specified by:
        getImagingEnvironmentMap in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the MapAnnotation values.
      • getArcAnnotationRef

        public String getArcAnnotationRef​(int instrumentIndex,
                                          int lightSourceIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Arc.
        Specified by:
        getArcAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getArcID

        public String getArcID​(int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Arc.
        Specified by:
        getArcID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getArcLotNumber

        public String getArcLotNumber​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Arc.
        Specified by:
        getArcLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getArcManufacturer

        public String getArcManufacturer​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Arc.
        Specified by:
        getArcManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getArcModel

        public String getArcModel​(int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Arc.
        Specified by:
        getArcModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getArcPower

        public Power getArcPower​(int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Arc.
        Specified by:
        getArcPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getArcSerialNumber

        public String getArcSerialNumber​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Arc.
        Specified by:
        getArcSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getArcType

        public ArcType getArcType​(int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Arc.
        Specified by:
        getArcType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getBinaryFileBinData

        public byte[] getBinaryFileBinData​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getBinaryFileBinData in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Base64Binary property.
      • getMaskBinData

        public byte[] getMaskBinData​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getMaskBinData in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Base64Binary property.
      • getPixelsBinData

        public byte[] getPixelsBinData​(int imageIndex,
                                       int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Base64Binary property of BinData.
        Specified by:
        getPixelsBinData in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Base64Binary property.
      • getBinaryFileBinDataBigEndian

        public Boolean getBinaryFileBinDataBigEndian​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getBinaryFileBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the BigEndian property.
      • getMaskBinDataBigEndian

        public Boolean getMaskBinDataBigEndian​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getMaskBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the BigEndian property.
      • getPixelsBinDataBigEndian

        public Boolean getPixelsBinDataBigEndian​(int imageIndex,
                                                 int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of BinData.
        Specified by:
        getPixelsBinDataBigEndian in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the BigEndian property.
      • getBinaryFileBinDataCompression

        public Compression getBinaryFileBinDataCompression​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getBinaryFileBinDataCompression in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Compression property.
      • getMaskBinDataCompression

        public Compression getMaskBinDataCompression​(int ROIIndex,
                                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getMaskBinDataCompression in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Compression property.
      • getPixelsBinDataCompression

        public Compression getPixelsBinDataCompression​(int imageIndex,
                                                       int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Compression property of BinData.
        Specified by:
        getPixelsBinDataCompression in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Compression property.
      • getMaskBinDataLength

        public NonNegativeLong getMaskBinDataLength​(int ROIIndex,
                                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Length property of BinData.
        Specified by:
        getMaskBinDataLength in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Length property.
      • getPixelsBinDataLength

        public NonNegativeLong getPixelsBinDataLength​(int imageIndex,
                                                      int binDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the Length property of BinData.
        Specified by:
        getPixelsBinDataLength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        binDataIndex - the BinData index.
        Returns:
        the Length property.
      • getBinaryFileFileName

        public String getBinaryFileFileName​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the FileName property of BinaryFile.
        Specified by:
        getBinaryFileFileName in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the FileName property.
      • getBinaryFileMIMEType

        public String getBinaryFileMIMEType​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the MIMEType property of BinaryFile.
        Specified by:
        getBinaryFileMIMEType in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the MIMEType property.
      • getBinaryFileSize

        public NonNegativeLong getBinaryFileSize​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Size property of BinaryFile.
        Specified by:
        getBinaryFileSize in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Size property.
      • getBooleanAnnotationAnnotationRef

        public String getBooleanAnnotationAnnotationRef​(int booleanAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getBooleanAnnotationAnnotator

        public String getBooleanAnnotationAnnotator​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Annotator property.
      • getBooleanAnnotationDescription

        public String getBooleanAnnotationDescription​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationDescription in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Description property.
      • getBooleanAnnotationID

        public String getBooleanAnnotationID​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationID in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the ID property.
      • getBooleanAnnotationNamespace

        public String getBooleanAnnotationNamespace​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Namespace property.
      • getBooleanAnnotationValue

        public Boolean getBooleanAnnotationValue​(int booleanAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of BooleanAnnotation.
        Specified by:
        getBooleanAnnotationValue in interface MetadataRetrieve
        Parameters:
        booleanAnnotationIndex - the BooleanAnnotation index.
        Returns:
        the Value property.
      • getChannelAcquisitionMode

        public AcquisitionMode getChannelAcquisitionMode​(int imageIndex,
                                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the AcquisitionMode property of Channel.
        Specified by:
        getChannelAcquisitionMode in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the AcquisitionMode property.
      • getChannelAnnotationRef

        public String getChannelAnnotationRef​(int imageIndex,
                                              int channelIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Channel.
        Specified by:
        getChannelAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getChannelColor

        public Color getChannelColor​(int imageIndex,
                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Color property of Channel.
        Specified by:
        getChannelColor in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Color property.
      • getChannelContrastMethod

        public ContrastMethod getChannelContrastMethod​(int imageIndex,
                                                       int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ContrastMethod property of Channel.
        Specified by:
        getChannelContrastMethod in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ContrastMethod property.
      • getChannelEmissionWavelength

        public Length getChannelEmissionWavelength​(int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionWavelength property of Channel.
        Specified by:
        getChannelEmissionWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the EmissionWavelength property.
      • getChannelExcitationWavelength

        public Length getChannelExcitationWavelength​(int imageIndex,
                                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationWavelength property of Channel.
        Specified by:
        getChannelExcitationWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ExcitationWavelength property.
      • getChannelFilterSetRef

        public String getChannelFilterSetRef​(int imageIndex,
                                             int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the FilterSetRef property of Channel.
        Specified by:
        getChannelFilterSetRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the FilterSetRef property.
      • getChannelFluor

        public String getChannelFluor​(int imageIndex,
                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Fluor property of Channel.
        Specified by:
        getChannelFluor in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Fluor property.
      • getChannelID

        public String getChannelID​(int imageIndex,
                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Channel.
        Specified by:
        getChannelID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getChannelIlluminationType

        public IlluminationType getChannelIlluminationType​(int imageIndex,
                                                           int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the IlluminationType property of Channel.
        Specified by:
        getChannelIlluminationType in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the IlluminationType property.
      • getChannelNDFilter

        public Double getChannelNDFilter​(int imageIndex,
                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the NDFilter property of Channel.
        Specified by:
        getChannelNDFilter in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the NDFilter property.
      • getChannelName

        public String getChannelName​(int imageIndex,
                                     int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Channel.
        Specified by:
        getChannelName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Name property.
      • getChannelPinholeSize

        public Length getChannelPinholeSize​(int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the PinholeSize property of Channel.
        Specified by:
        getChannelPinholeSize in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the PinholeSize property.
      • getChannelPockelCellSetting

        public Integer getChannelPockelCellSetting​(int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the PockelCellSetting property of Channel.
        Specified by:
        getChannelPockelCellSetting in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the PockelCellSetting property.
      • getChannelSamplesPerPixel

        public PositiveInteger getChannelSamplesPerPixel​(int imageIndex,
                                                         int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the SamplesPerPixel property of Channel.
        Specified by:
        getChannelSamplesPerPixel in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the SamplesPerPixel property.
      • getCommentAnnotationAnnotationRef

        public String getCommentAnnotationAnnotationRef​(int commentAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of CommentAnnotation.
        Specified by:
        getCommentAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getCommentAnnotationAnnotator

        public String getCommentAnnotationAnnotator​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of CommentAnnotation.
        Specified by:
        getCommentAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Annotator property.
      • getCommentAnnotationDescription

        public String getCommentAnnotationDescription​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of CommentAnnotation.
        Specified by:
        getCommentAnnotationDescription in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Description property.
      • getCommentAnnotationID

        public String getCommentAnnotationID​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of CommentAnnotation.
        Specified by:
        getCommentAnnotationID in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the ID property.
      • getCommentAnnotationNamespace

        public String getCommentAnnotationNamespace​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of CommentAnnotation.
        Specified by:
        getCommentAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Namespace property.
      • getCommentAnnotationValue

        public String getCommentAnnotationValue​(int commentAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of CommentAnnotation.
        Specified by:
        getCommentAnnotationValue in interface MetadataRetrieve
        Parameters:
        commentAnnotationIndex - the CommentAnnotation index.
        Returns:
        the Value property.
      • getDatasetAnnotationRef

        public String getDatasetAnnotationRef​(int datasetIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Dataset.
        Specified by:
        getDatasetAnnotationRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDatasetDescription

        public String getDatasetDescription​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Dataset.
        Specified by:
        getDatasetDescription in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the Description property.
      • getDatasetExperimenterGroupRef

        public String getDatasetExperimenterGroupRef​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Dataset.
        Specified by:
        getDatasetExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ExperimenterGroupRef property.
      • getDatasetExperimenterRef

        public String getDatasetExperimenterRef​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Dataset.
        Specified by:
        getDatasetExperimenterRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ExperimenterRef property.
      • getDatasetID

        public String getDatasetID​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Dataset.
        Specified by:
        getDatasetID in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the ID property.
      • getDatasetImageRef

        public String getDatasetImageRef​(int datasetIndex,
                                         int imageRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of Dataset.
        Specified by:
        getDatasetImageRef in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        imageRefIndex - ImageRef index.
        Returns:
        the ImageRef property.
      • getDatasetName

        public String getDatasetName​(int datasetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Dataset.
        Specified by:
        getDatasetName in interface MetadataRetrieve
        Parameters:
        datasetIndex - the Dataset index.
        Returns:
        the Name property.
      • getDetectorAmplificationGain

        public Double getDetectorAmplificationGain​(int instrumentIndex,
                                                   int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the AmplificationGain property of Detector.
        Specified by:
        getDetectorAmplificationGain in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the AmplificationGain property.
      • getDetectorAnnotationRef

        public String getDetectorAnnotationRef​(int instrumentIndex,
                                               int detectorIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Detector.
        Specified by:
        getDetectorAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDetectorGain

        public Double getDetectorGain​(int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Gain property of Detector.
        Specified by:
        getDetectorGain in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Gain property.
      • getDetectorID

        public String getDetectorID​(int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Detector.
        Specified by:
        getDetectorID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the ID property.
      • getDetectorLotNumber

        public String getDetectorLotNumber​(int instrumentIndex,
                                           int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Detector.
        Specified by:
        getDetectorLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the LotNumber property.
      • getDetectorManufacturer

        public String getDetectorManufacturer​(int instrumentIndex,
                                              int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Detector.
        Specified by:
        getDetectorManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Manufacturer property.
      • getDetectorModel

        public String getDetectorModel​(int instrumentIndex,
                                       int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Detector.
        Specified by:
        getDetectorModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Model property.
      • getDetectorOffset

        public Double getDetectorOffset​(int instrumentIndex,
                                        int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Offset property of Detector.
        Specified by:
        getDetectorOffset in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Offset property.
      • getDetectorSerialNumber

        public String getDetectorSerialNumber​(int instrumentIndex,
                                              int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Detector.
        Specified by:
        getDetectorSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the SerialNumber property.
      • getDetectorType

        public DetectorType getDetectorType​(int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Detector.
        Specified by:
        getDetectorType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Type property.
      • getDetectorVoltage

        public ElectricPotential getDetectorVoltage​(int instrumentIndex,
                                                    int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Voltage property of Detector.
        Specified by:
        getDetectorVoltage in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Voltage property.
      • getDetectorZoom

        public Double getDetectorZoom​(int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataRetrieve
        Get the Zoom property of Detector.
        Specified by:
        getDetectorZoom in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        Returns:
        the Zoom property.
      • getDetectorSettingsBinning

        public Binning getDetectorSettingsBinning​(int imageIndex,
                                                  int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Binning property of DetectorSettings.
        Specified by:
        getDetectorSettingsBinning in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Binning property.
      • getDetectorSettingsGain

        public Double getDetectorSettingsGain​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Gain property of DetectorSettings.
        Specified by:
        getDetectorSettingsGain in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Gain property.
      • getDetectorSettingsID

        public String getDetectorSettingsID​(int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of DetectorSettings.
        Specified by:
        getDetectorSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getDetectorSettingsIntegration

        public PositiveInteger getDetectorSettingsIntegration​(int imageIndex,
                                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Integration property of DetectorSettings.
        Specified by:
        getDetectorSettingsIntegration in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Integration property.
      • getDetectorSettingsOffset

        public Double getDetectorSettingsOffset​(int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Offset property of DetectorSettings.
        Specified by:
        getDetectorSettingsOffset in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Offset property.
      • getDetectorSettingsReadOutRate

        public Frequency getDetectorSettingsReadOutRate​(int imageIndex,
                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReadOutRate property of DetectorSettings.
        Specified by:
        getDetectorSettingsReadOutRate in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ReadOutRate property.
      • getDetectorSettingsVoltage

        public ElectricPotential getDetectorSettingsVoltage​(int imageIndex,
                                                            int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Voltage property of DetectorSettings.
        Specified by:
        getDetectorSettingsVoltage in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Voltage property.
      • getDetectorSettingsZoom

        public Double getDetectorSettingsZoom​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Zoom property of DetectorSettings.
        Specified by:
        getDetectorSettingsZoom in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Zoom property.
      • getDichroicAnnotationRef

        public String getDichroicAnnotationRef​(int instrumentIndex,
                                               int dichroicIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Dichroic.
        Specified by:
        getDichroicAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDichroicID

        public String getDichroicID​(int instrumentIndex,
                                    int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Dichroic.
        Specified by:
        getDichroicID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the ID property.
      • getDichroicLotNumber

        public String getDichroicLotNumber​(int instrumentIndex,
                                           int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Dichroic.
        Specified by:
        getDichroicLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the LotNumber property.
      • getDichroicManufacturer

        public String getDichroicManufacturer​(int instrumentIndex,
                                              int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Dichroic.
        Specified by:
        getDichroicManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the Manufacturer property.
      • getDichroicModel

        public String getDichroicModel​(int instrumentIndex,
                                       int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Dichroic.
        Specified by:
        getDichroicModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the Model property.
      • getDichroicSerialNumber

        public String getDichroicSerialNumber​(int instrumentIndex,
                                              int dichroicIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Dichroic.
        Specified by:
        getDichroicSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        Returns:
        the SerialNumber property.
      • getDoubleAnnotationAnnotationRef

        public String getDoubleAnnotationAnnotationRef​(int doubleAnnotationIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getDoubleAnnotationAnnotator

        public String getDoubleAnnotationAnnotator​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Annotator property.
      • getDoubleAnnotationDescription

        public String getDoubleAnnotationDescription​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationDescription in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Description property.
      • getDoubleAnnotationID

        public String getDoubleAnnotationID​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationID in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the ID property.
      • getDoubleAnnotationNamespace

        public String getDoubleAnnotationNamespace​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Namespace property.
      • getDoubleAnnotationValue

        public Double getDoubleAnnotationValue​(int doubleAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of DoubleAnnotation.
        Specified by:
        getDoubleAnnotationValue in interface MetadataRetrieve
        Parameters:
        doubleAnnotationIndex - the DoubleAnnotation index.
        Returns:
        the Value property.
      • getEllipseAnnotationRef

        public String getEllipseAnnotationRef​(int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Ellipse.
        Specified by:
        getEllipseAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getEllipseFillColor

        public Color getEllipseFillColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Ellipse.
        Specified by:
        getEllipseFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getEllipseFillRule

        public FillRule getEllipseFillRule​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Ellipse.
        Specified by:
        getEllipseFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getEllipseFontFamily

        public FontFamily getEllipseFontFamily​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Ellipse.
        Specified by:
        getEllipseFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getEllipseFontSize

        public Length getEllipseFontSize​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Ellipse.
        Specified by:
        getEllipseFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getEllipseFontStyle

        public FontStyle getEllipseFontStyle​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Ellipse.
        Specified by:
        getEllipseFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getEllipseID

        public String getEllipseID​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Ellipse.
        Specified by:
        getEllipseID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getEllipseLocked

        public Boolean getEllipseLocked​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Ellipse.
        Specified by:
        getEllipseLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getEllipseRadiusX

        public Double getEllipseRadiusX​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the RadiusX property of Ellipse.
        Specified by:
        getEllipseRadiusX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the RadiusX property.
      • getEllipseRadiusY

        public Double getEllipseRadiusY​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the RadiusY property of Ellipse.
        Specified by:
        getEllipseRadiusY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the RadiusY property.
      • getEllipseStrokeColor

        public Color getEllipseStrokeColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Ellipse.
        Specified by:
        getEllipseStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getEllipseStrokeDashArray

        public String getEllipseStrokeDashArray​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Ellipse.
        Specified by:
        getEllipseStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getEllipseStrokeWidth

        public Length getEllipseStrokeWidth​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Ellipse.
        Specified by:
        getEllipseStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getEllipseText

        public String getEllipseText​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Ellipse.
        Specified by:
        getEllipseText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getEllipseTheC

        public NonNegativeInteger getEllipseTheC​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Ellipse.
        Specified by:
        getEllipseTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getEllipseTheT

        public NonNegativeInteger getEllipseTheT​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Ellipse.
        Specified by:
        getEllipseTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getEllipseTheZ

        public NonNegativeInteger getEllipseTheZ​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Ellipse.
        Specified by:
        getEllipseTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getEllipseTransform

        public AffineTransform getEllipseTransform​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Ellipse.
        Specified by:
        getEllipseTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getEllipseX

        public Double getEllipseX​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Ellipse.
        Specified by:
        getEllipseX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getEllipseY

        public Double getEllipseY​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Ellipse.
        Specified by:
        getEllipseY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getExperimentDescription

        public String getExperimentDescription​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Experiment.
        Specified by:
        getExperimentDescription in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the Description property.
      • getExperimentExperimenterRef

        public String getExperimentExperimenterRef​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Experiment.
        Specified by:
        getExperimentExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the ExperimenterRef property.
      • getExperimentID

        public String getExperimentID​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Experiment.
        Specified by:
        getExperimentID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the ID property.
      • getExperimentType

        public ExperimentType getExperimentType​(int experimentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Experiment.
        Specified by:
        getExperimentType in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        Returns:
        the Type property.
      • getExperimenterAnnotationRef

        public String getExperimenterAnnotationRef​(int experimenterIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Experimenter.
        Specified by:
        getExperimenterAnnotationRef in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getExperimenterEmail

        public String getExperimenterEmail​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Email property of Experimenter.
        Specified by:
        getExperimenterEmail in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the Email property.
      • getExperimenterFirstName

        public String getExperimenterFirstName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstName property of Experimenter.
        Specified by:
        getExperimenterFirstName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the FirstName property.
      • getExperimenterID

        public String getExperimenterID​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Experimenter.
        Specified by:
        getExperimenterID in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the ID property.
      • getExperimenterInstitution

        public String getExperimenterInstitution​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Institution property of Experimenter.
        Specified by:
        getExperimenterInstitution in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the Institution property.
      • getExperimenterLastName

        public String getExperimenterLastName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the LastName property of Experimenter.
        Specified by:
        getExperimenterLastName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the LastName property.
      • getExperimenterMiddleName

        public String getExperimenterMiddleName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the MiddleName property of Experimenter.
        Specified by:
        getExperimenterMiddleName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the MiddleName property.
      • getExperimenterUserName

        public String getExperimenterUserName​(int experimenterIndex)
        Description copied from interface: MetadataRetrieve
        Get the UserName property of Experimenter.
        Specified by:
        getExperimenterUserName in interface MetadataRetrieve
        Parameters:
        experimenterIndex - the Experimenter index.
        Returns:
        the UserName property.
      • getExperimenterGroupAnnotationRef

        public String getExperimenterGroupAnnotationRef​(int experimenterGroupIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupAnnotationRef in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getExperimenterGroupDescription

        public String getExperimenterGroupDescription​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupDescription in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the Description property.
      • getExperimenterGroupExperimenterRef

        public String getExperimenterGroupExperimenterRef​(int experimenterGroupIndex,
                                                          int experimenterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        experimenterRefIndex - ExperimenterRef index.
        Returns:
        the ExperimenterRef property.
      • getExperimenterGroupID

        public String getExperimenterGroupID​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupID in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the ID property.
      • getExperimenterGroupLeader

        public String getExperimenterGroupLeader​(int experimenterGroupIndex,
                                                 int leaderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Leader property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupLeader in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        leaderIndex - Leader index.
        Returns:
        the Leader property.
      • getExperimenterGroupName

        public String getExperimenterGroupName​(int experimenterGroupIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of ExperimenterGroup.
        Specified by:
        getExperimenterGroupName in interface MetadataRetrieve
        Parameters:
        experimenterGroupIndex - the ExperimenterGroup index.
        Returns:
        the Name property.
      • getFilamentAnnotationRef

        public String getFilamentAnnotationRef​(int instrumentIndex,
                                               int lightSourceIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Filament.
        Specified by:
        getFilamentAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFilamentID

        public String getFilamentID​(int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Filament.
        Specified by:
        getFilamentID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getFilamentLotNumber

        public String getFilamentLotNumber​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Filament.
        Specified by:
        getFilamentLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getFilamentManufacturer

        public String getFilamentManufacturer​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Filament.
        Specified by:
        getFilamentManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getFilamentModel

        public String getFilamentModel​(int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Filament.
        Specified by:
        getFilamentModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getFilamentPower

        public Power getFilamentPower​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Filament.
        Specified by:
        getFilamentPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getFilamentSerialNumber

        public String getFilamentSerialNumber​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Filament.
        Specified by:
        getFilamentSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getFilamentType

        public FilamentType getFilamentType​(int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Filament.
        Specified by:
        getFilamentType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getFileAnnotationAnnotationRef

        public String getFileAnnotationAnnotationRef​(int fileAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of FileAnnotation.
        Specified by:
        getFileAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFileAnnotationAnnotator

        public String getFileAnnotationAnnotator​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of FileAnnotation.
        Specified by:
        getFileAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Annotator property.
      • getFileAnnotationDescription

        public String getFileAnnotationDescription​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of FileAnnotation.
        Specified by:
        getFileAnnotationDescription in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Description property.
      • getFileAnnotationID

        public String getFileAnnotationID​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of FileAnnotation.
        Specified by:
        getFileAnnotationID in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the ID property.
      • getFileAnnotationNamespace

        public String getFileAnnotationNamespace​(int fileAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of FileAnnotation.
        Specified by:
        getFileAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        fileAnnotationIndex - the FileAnnotation index.
        Returns:
        the Namespace property.
      • getFilterAnnotationRef

        public String getFilterAnnotationRef​(int instrumentIndex,
                                             int filterIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Filter.
        Specified by:
        getFilterAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFilterFilterWheel

        public String getFilterFilterWheel​(int instrumentIndex,
                                           int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the FilterWheel property of Filter.
        Specified by:
        getFilterFilterWheel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the FilterWheel property.
      • getFilterID

        public String getFilterID​(int instrumentIndex,
                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Filter.
        Specified by:
        getFilterID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the ID property.
      • getFilterLotNumber

        public String getFilterLotNumber​(int instrumentIndex,
                                         int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Filter.
        Specified by:
        getFilterLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the LotNumber property.
      • getFilterManufacturer

        public String getFilterManufacturer​(int instrumentIndex,
                                            int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Filter.
        Specified by:
        getFilterManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Manufacturer property.
      • getFilterModel

        public String getFilterModel​(int instrumentIndex,
                                     int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Filter.
        Specified by:
        getFilterModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Model property.
      • getFilterSerialNumber

        public String getFilterSerialNumber​(int instrumentIndex,
                                            int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Filter.
        Specified by:
        getFilterSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the SerialNumber property.
      • getFilterType

        public FilterType getFilterType​(int instrumentIndex,
                                        int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Filter.
        Specified by:
        getFilterType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Type property.
      • getFilterSetDichroicRef

        public String getFilterSetDichroicRef​(int instrumentIndex,
                                              int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the DichroicRef property of FilterSet.
        Specified by:
        getFilterSetDichroicRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the DichroicRef property.
      • getFilterSetEmissionFilterRef

        public String getFilterSetEmissionFilterRef​(int instrumentIndex,
                                                    int filterSetIndex,
                                                    int emissionFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionFilterRef property of FilterSet.
        Specified by:
        getFilterSetEmissionFilterRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        emissionFilterRefIndex - EmissionFilterRef index.
        Returns:
        the EmissionFilterRef property.
      • getFilterSetExcitationFilterRef

        public String getFilterSetExcitationFilterRef​(int instrumentIndex,
                                                      int filterSetIndex,
                                                      int excitationFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationFilterRef property of FilterSet.
        Specified by:
        getFilterSetExcitationFilterRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        excitationFilterRefIndex - ExcitationFilterRef index.
        Returns:
        the ExcitationFilterRef property.
      • getFilterSetID

        public String getFilterSetID​(int instrumentIndex,
                                     int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of FilterSet.
        Specified by:
        getFilterSetID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the ID property.
      • getFilterSetLotNumber

        public String getFilterSetLotNumber​(int instrumentIndex,
                                            int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of FilterSet.
        Specified by:
        getFilterSetLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the LotNumber property.
      • getFilterSetManufacturer

        public String getFilterSetManufacturer​(int instrumentIndex,
                                               int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of FilterSet.
        Specified by:
        getFilterSetManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the Manufacturer property.
      • getFilterSetModel

        public String getFilterSetModel​(int instrumentIndex,
                                        int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of FilterSet.
        Specified by:
        getFilterSetModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the Model property.
      • getFilterSetSerialNumber

        public String getFilterSetSerialNumber​(int instrumentIndex,
                                               int filterSetIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of FilterSet.
        Specified by:
        getFilterSetSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        Returns:
        the SerialNumber property.
      • getFolderAnnotationRef

        public String getFolderAnnotationRef​(int folderIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Folder.
        Specified by:
        getFolderAnnotationRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getFolderDescription

        public String getFolderDescription​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Folder.
        Specified by:
        getFolderDescription in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the Description property.
      • getFolderFolderRef

        public String getFolderFolderRef​(int folderIndex,
                                         int folderRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the FolderRef property of Folder.
        Specified by:
        getFolderFolderRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        folderRefIndex - FolderRef index.
        Returns:
        the FolderRef property.
      • getFolderID

        public String getFolderID​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Folder.
        Specified by:
        getFolderID in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the ID property.
      • getFolderImageRef

        public String getFolderImageRef​(int folderIndex,
                                        int imageRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of Folder.
        Specified by:
        getFolderImageRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        imageRefIndex - ImageRef index.
        Returns:
        the ImageRef property.
      • getFolderName

        public String getFolderName​(int folderIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Folder.
        Specified by:
        getFolderName in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        Returns:
        the Name property.
      • getFolderROIRef

        public String getFolderROIRef​(int folderIndex,
                                      int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of Folder.
        Specified by:
        getFolderROIRef in interface MetadataRetrieve
        Parameters:
        folderIndex - the Folder index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getGenericExcitationSourceAnnotationRef

        public String getGenericExcitationSourceAnnotationRef​(int instrumentIndex,
                                                              int lightSourceIndex,
                                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getGenericExcitationSourceID

        public String getGenericExcitationSourceID​(int instrumentIndex,
                                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getGenericExcitationSourceLotNumber

        public String getGenericExcitationSourceLotNumber​(int instrumentIndex,
                                                          int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getGenericExcitationSourceManufacturer

        public String getGenericExcitationSourceManufacturer​(int instrumentIndex,
                                                             int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getGenericExcitationSourceModel

        public String getGenericExcitationSourceModel​(int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getGenericExcitationSourcePower

        public Power getGenericExcitationSourcePower​(int instrumentIndex,
                                                     int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourcePower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getGenericExcitationSourceSerialNumber

        public String getGenericExcitationSourceSerialNumber​(int instrumentIndex,
                                                             int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of GenericExcitationSource.
        Specified by:
        getGenericExcitationSourceSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getImageAcquisitionDate

        public Timestamp getImageAcquisitionDate​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the AcquisitionDate property of Image.
        Specified by:
        getImageAcquisitionDate in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the AcquisitionDate property.
      • getImageAnnotationRef

        public String getImageAnnotationRef​(int imageIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Image.
        Specified by:
        getImageAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getImageDescription

        public String getImageDescription​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Image.
        Specified by:
        getImageDescription in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Description property.
      • getImageExperimentRef

        public String getImageExperimentRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimentRef property of Image.
        Specified by:
        getImageExperimentRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimentRef property.
      • getImageExperimenterGroupRef

        public String getImageExperimenterGroupRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Image.
        Specified by:
        getImageExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimenterGroupRef property.
      • getImageExperimenterRef

        public String getImageExperimenterRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Image.
        Specified by:
        getImageExperimenterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ExperimenterRef property.
      • getImageID

        public String getImageID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Image.
        Specified by:
        getImageID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getImageInstrumentRef

        public String getImageInstrumentRef​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the InstrumentRef property of Image.
        Specified by:
        getImageInstrumentRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the InstrumentRef property.
      • getImageMicrobeamManipulationRef

        public String getImageMicrobeamManipulationRef​(int imageIndex,
                                                       int microbeamManipulationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the MicrobeamManipulationRef property of Image.
        Specified by:
        getImageMicrobeamManipulationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        microbeamManipulationRefIndex - MicrobeamManipulationRef index.
        Returns:
        the MicrobeamManipulationRef property.
      • getImageName

        public String getImageName​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Image.
        Specified by:
        getImageName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Name property.
      • getImageROIRef

        public String getImageROIRef​(int imageIndex,
                                     int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of Image.
        Specified by:
        getImageROIRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getImagingEnvironmentAirPressure

        public Pressure getImagingEnvironmentAirPressure​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the AirPressure property of ImagingEnvironment.
        Specified by:
        getImagingEnvironmentAirPressure in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the AirPressure property.
      • getInstrumentAnnotationRef

        public String getInstrumentAnnotationRef​(int instrumentIndex,
                                                 int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Instrument.
        Specified by:
        getInstrumentAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getInstrumentID

        public String getInstrumentID​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Instrument.
        Specified by:
        getInstrumentID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the ID property.
      • getLabelAnnotationRef

        public String getLabelAnnotationRef​(int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Label.
        Specified by:
        getLabelAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLabelFillColor

        public Color getLabelFillColor​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Label.
        Specified by:
        getLabelFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getLabelFillRule

        public FillRule getLabelFillRule​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Label.
        Specified by:
        getLabelFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getLabelFontFamily

        public FontFamily getLabelFontFamily​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Label.
        Specified by:
        getLabelFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getLabelFontSize

        public Length getLabelFontSize​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Label.
        Specified by:
        getLabelFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getLabelFontStyle

        public FontStyle getLabelFontStyle​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Label.
        Specified by:
        getLabelFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getLabelID

        public String getLabelID​(int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Label.
        Specified by:
        getLabelID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getLabelLocked

        public Boolean getLabelLocked​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Label.
        Specified by:
        getLabelLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getLabelStrokeColor

        public Color getLabelStrokeColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Label.
        Specified by:
        getLabelStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getLabelStrokeDashArray

        public String getLabelStrokeDashArray​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Label.
        Specified by:
        getLabelStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getLabelStrokeWidth

        public Length getLabelStrokeWidth​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Label.
        Specified by:
        getLabelStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getLabelText

        public String getLabelText​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Label.
        Specified by:
        getLabelText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getLabelTheC

        public NonNegativeInteger getLabelTheC​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Label.
        Specified by:
        getLabelTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getLabelTheT

        public NonNegativeInteger getLabelTheT​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Label.
        Specified by:
        getLabelTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getLabelTheZ

        public NonNegativeInteger getLabelTheZ​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Label.
        Specified by:
        getLabelTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getLabelTransform

        public AffineTransform getLabelTransform​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Label.
        Specified by:
        getLabelTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getLabelX

        public Double getLabelX​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Label.
        Specified by:
        getLabelX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getLabelY

        public Double getLabelY​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Label.
        Specified by:
        getLabelY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getLaserAnnotationRef

        public String getLaserAnnotationRef​(int instrumentIndex,
                                            int lightSourceIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Laser.
        Specified by:
        getLaserAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLaserFrequencyMultiplication

        public PositiveInteger getLaserFrequencyMultiplication​(int instrumentIndex,
                                                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the FrequencyMultiplication property of Laser.
        Specified by:
        getLaserFrequencyMultiplication in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the FrequencyMultiplication property.
      • getLaserID

        public String getLaserID​(int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Laser.
        Specified by:
        getLaserID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getLaserLaserMedium

        public LaserMedium getLaserLaserMedium​(int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LaserMedium property of Laser.
        Specified by:
        getLaserLaserMedium in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LaserMedium property.
      • getLaserLotNumber

        public String getLaserLotNumber​(int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Laser.
        Specified by:
        getLaserLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getLaserManufacturer

        public String getLaserManufacturer​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Laser.
        Specified by:
        getLaserManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getLaserModel

        public String getLaserModel​(int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Laser.
        Specified by:
        getLaserModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getLaserPockelCell

        public Boolean getLaserPockelCell​(int instrumentIndex,
                                          int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the PockelCell property of Laser.
        Specified by:
        getLaserPockelCell in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the PockelCell property.
      • getLaserPower

        public Power getLaserPower​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of Laser.
        Specified by:
        getLaserPower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getLaserPulse

        public Pulse getLaserPulse​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Pulse property of Laser.
        Specified by:
        getLaserPulse in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Pulse property.
      • getLaserPump

        public String getLaserPump​(int instrumentIndex,
                                   int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Pump property of Laser.
        Specified by:
        getLaserPump in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Pump property.
      • getLaserRepetitionRate

        public Frequency getLaserRepetitionRate​(int instrumentIndex,
                                                int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the RepetitionRate property of Laser.
        Specified by:
        getLaserRepetitionRate in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the RepetitionRate property.
      • getLaserSerialNumber

        public String getLaserSerialNumber​(int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Laser.
        Specified by:
        getLaserSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getLaserTuneable

        public Boolean getLaserTuneable​(int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Tuneable property of Laser.
        Specified by:
        getLaserTuneable in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Tuneable property.
      • getLaserType

        public LaserType getLaserType​(int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Laser.
        Specified by:
        getLaserType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Type property.
      • getLaserWavelength

        public Length getLaserWavelength​(int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of Laser.
        Specified by:
        getLaserWavelength in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Wavelength property.
      • getLightEmittingDiodeAnnotationRef

        public String getLightEmittingDiodeAnnotationRef​(int instrumentIndex,
                                                         int lightSourceIndex,
                                                         int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLightEmittingDiodeID

        public String getLightEmittingDiodeID​(int instrumentIndex,
                                              int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the ID property.
      • getLightEmittingDiodeLotNumber

        public String getLightEmittingDiodeLotNumber​(int instrumentIndex,
                                                     int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the LotNumber property.
      • getLightEmittingDiodeManufacturer

        public String getLightEmittingDiodeManufacturer​(int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Manufacturer property.
      • getLightEmittingDiodeModel

        public String getLightEmittingDiodeModel​(int instrumentIndex,
                                                 int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Model property.
      • getLightEmittingDiodePower

        public Power getLightEmittingDiodePower​(int instrumentIndex,
                                                int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the Power property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodePower in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the Power property.
      • getLightEmittingDiodeSerialNumber

        public String getLightEmittingDiodeSerialNumber​(int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of LightEmittingDiode.
        Specified by:
        getLightEmittingDiodeSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        Returns:
        the SerialNumber property.
      • getLightPathAnnotationRef

        public String getLightPathAnnotationRef​(int imageIndex,
                                                int channelIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LightPath.
        Specified by:
        getLightPathAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLightPathDichroicRef

        public String getLightPathDichroicRef​(int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the DichroicRef property of LightPath.
        Specified by:
        getLightPathDichroicRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the DichroicRef property.
      • getLightPathEmissionFilterRef

        public String getLightPathEmissionFilterRef​(int imageIndex,
                                                    int channelIndex,
                                                    int emissionFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the EmissionFilterRef property of LightPath.
        Specified by:
        getLightPathEmissionFilterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        emissionFilterRefIndex - EmissionFilterRef index.
        Returns:
        the EmissionFilterRef property.
      • getLightPathExcitationFilterRef

        public String getLightPathExcitationFilterRef​(int imageIndex,
                                                      int channelIndex,
                                                      int excitationFilterRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExcitationFilterRef property of LightPath.
        Specified by:
        getLightPathExcitationFilterRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        excitationFilterRefIndex - ExcitationFilterRef index.
        Returns:
        the ExcitationFilterRef property.
      • getChannelLightSourceSettingsAttenuation

        public PercentFraction getChannelLightSourceSettingsAttenuation​(int imageIndex,
                                                                        int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Attenuation property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsAttenuation in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Attenuation property.
      • getMicrobeamManipulationLightSourceSettingsAttenuation

        public PercentFraction getMicrobeamManipulationLightSourceSettingsAttenuation​(int experimentIndex,
                                                                                      int microbeamManipulationIndex,
                                                                                      int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the Attenuation property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the Attenuation property.
      • getChannelLightSourceSettingsID

        public String getChannelLightSourceSettingsID​(int imageIndex,
                                                      int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the ID property.
      • getMicrobeamManipulationLightSourceSettingsID

        public String getMicrobeamManipulationLightSourceSettingsID​(int experimentIndex,
                                                                    int microbeamManipulationIndex,
                                                                    int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the ID property.
      • getChannelLightSourceSettingsWavelength

        public Length getChannelLightSourceSettingsWavelength​(int imageIndex,
                                                              int channelIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of LightSourceSettings.
        Specified by:
        getChannelLightSourceSettingsWavelength in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        channelIndex - the Channel index.
        Returns:
        the Wavelength property.
      • getMicrobeamManipulationLightSourceSettingsWavelength

        public Length getMicrobeamManipulationLightSourceSettingsWavelength​(int experimentIndex,
                                                                            int microbeamManipulationIndex,
                                                                            int lightSourceSettingsIndex)
        Description copied from interface: MetadataRetrieve
        Get the Wavelength property of LightSourceSettings.
        Specified by:
        getMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
        Returns:
        the Wavelength property.
      • getLineAnnotationRef

        public String getLineAnnotationRef​(int ROIIndex,
                                           int shapeIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Line.
        Specified by:
        getLineAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLineFillColor

        public Color getLineFillColor​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Line.
        Specified by:
        getLineFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getLineFillRule

        public FillRule getLineFillRule​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Line.
        Specified by:
        getLineFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getLineFontFamily

        public FontFamily getLineFontFamily​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Line.
        Specified by:
        getLineFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getLineFontSize

        public Length getLineFontSize​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Line.
        Specified by:
        getLineFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getLineFontStyle

        public FontStyle getLineFontStyle​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Line.
        Specified by:
        getLineFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getLineID

        public String getLineID​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Line.
        Specified by:
        getLineID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getLineLocked

        public Boolean getLineLocked​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Line.
        Specified by:
        getLineLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getLineMarkerEnd

        public Marker getLineMarkerEnd​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerEnd property of Line.
        Specified by:
        getLineMarkerEnd in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerEnd property.
      • getLineMarkerStart

        public Marker getLineMarkerStart​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerStart property of Line.
        Specified by:
        getLineMarkerStart in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerStart property.
      • getLineStrokeColor

        public Color getLineStrokeColor​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Line.
        Specified by:
        getLineStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getLineStrokeDashArray

        public String getLineStrokeDashArray​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Line.
        Specified by:
        getLineStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getLineStrokeWidth

        public Length getLineStrokeWidth​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Line.
        Specified by:
        getLineStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getLineText

        public String getLineText​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Line.
        Specified by:
        getLineText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getLineTheC

        public NonNegativeInteger getLineTheC​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Line.
        Specified by:
        getLineTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getLineTheT

        public NonNegativeInteger getLineTheT​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Line.
        Specified by:
        getLineTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getLineTheZ

        public NonNegativeInteger getLineTheZ​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Line.
        Specified by:
        getLineTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getLineTransform

        public AffineTransform getLineTransform​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Line.
        Specified by:
        getLineTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getLineX1

        public Double getLineX1​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X1 property of Line.
        Specified by:
        getLineX1 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X1 property.
      • getLineX2

        public Double getLineX2​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X2 property of Line.
        Specified by:
        getLineX2 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X2 property.
      • getLineY1

        public Double getLineY1​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y1 property of Line.
        Specified by:
        getLineY1 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y1 property.
      • getLineY2

        public Double getLineY2​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y2 property of Line.
        Specified by:
        getLineY2 in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y2 property.
      • getListAnnotationAnnotationRef

        public String getListAnnotationAnnotationRef​(int listAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ListAnnotation.
        Specified by:
        getListAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getListAnnotationAnnotator

        public String getListAnnotationAnnotator​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of ListAnnotation.
        Specified by:
        getListAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Annotator property.
      • getListAnnotationDescription

        public String getListAnnotationDescription​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ListAnnotation.
        Specified by:
        getListAnnotationDescription in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Description property.
      • getListAnnotationID

        public String getListAnnotationID​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ListAnnotation.
        Specified by:
        getListAnnotationID in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the ID property.
      • getListAnnotationNamespace

        public String getListAnnotationNamespace​(int listAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of ListAnnotation.
        Specified by:
        getListAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        listAnnotationIndex - the ListAnnotation index.
        Returns:
        the Namespace property.
      • getLongAnnotationAnnotationRef

        public String getLongAnnotationAnnotationRef​(int longAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of LongAnnotation.
        Specified by:
        getLongAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getLongAnnotationAnnotator

        public String getLongAnnotationAnnotator​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of LongAnnotation.
        Specified by:
        getLongAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Annotator property.
      • getLongAnnotationDescription

        public String getLongAnnotationDescription​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of LongAnnotation.
        Specified by:
        getLongAnnotationDescription in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Description property.
      • getLongAnnotationID

        public String getLongAnnotationID​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of LongAnnotation.
        Specified by:
        getLongAnnotationID in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the ID property.
      • getLongAnnotationNamespace

        public String getLongAnnotationNamespace​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of LongAnnotation.
        Specified by:
        getLongAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Namespace property.
      • getLongAnnotationValue

        public Long getLongAnnotationValue​(int longAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of LongAnnotation.
        Specified by:
        getLongAnnotationValue in interface MetadataRetrieve
        Parameters:
        longAnnotationIndex - the LongAnnotation index.
        Returns:
        the Value property.
      • getMapAnnotationAnnotationRef

        public String getMapAnnotationAnnotationRef​(int mapAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of MapAnnotation.
        Specified by:
        getMapAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getMapAnnotationAnnotator

        public String getMapAnnotationAnnotator​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of MapAnnotation.
        Specified by:
        getMapAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Annotator property.
      • getMapAnnotationDescription

        public String getMapAnnotationDescription​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of MapAnnotation.
        Specified by:
        getMapAnnotationDescription in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Description property.
      • getMapAnnotationID

        public String getMapAnnotationID​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of MapAnnotation.
        Specified by:
        getMapAnnotationID in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the ID property.
      • getMapAnnotationNamespace

        public String getMapAnnotationNamespace​(int mapAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of MapAnnotation.
        Specified by:
        getMapAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        mapAnnotationIndex - the MapAnnotation index.
        Returns:
        the Namespace property.
      • getMaskAnnotationRef

        public String getMaskAnnotationRef​(int ROIIndex,
                                           int shapeIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Mask.
        Specified by:
        getMaskAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getMaskFillColor

        public Color getMaskFillColor​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Mask.
        Specified by:
        getMaskFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getMaskFillRule

        public FillRule getMaskFillRule​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Mask.
        Specified by:
        getMaskFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getMaskFontFamily

        public FontFamily getMaskFontFamily​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Mask.
        Specified by:
        getMaskFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getMaskFontSize

        public Length getMaskFontSize​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Mask.
        Specified by:
        getMaskFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getMaskFontStyle

        public FontStyle getMaskFontStyle​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Mask.
        Specified by:
        getMaskFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getMaskHeight

        public Double getMaskHeight​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Height property of Mask.
        Specified by:
        getMaskHeight in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Height property.
      • getMaskID

        public String getMaskID​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Mask.
        Specified by:
        getMaskID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getMaskLocked

        public Boolean getMaskLocked​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Mask.
        Specified by:
        getMaskLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getMaskStrokeColor

        public Color getMaskStrokeColor​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Mask.
        Specified by:
        getMaskStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getMaskStrokeDashArray

        public String getMaskStrokeDashArray​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Mask.
        Specified by:
        getMaskStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getMaskStrokeWidth

        public Length getMaskStrokeWidth​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Mask.
        Specified by:
        getMaskStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getMaskText

        public String getMaskText​(int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Mask.
        Specified by:
        getMaskText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getMaskTheC

        public NonNegativeInteger getMaskTheC​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Mask.
        Specified by:
        getMaskTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getMaskTheT

        public NonNegativeInteger getMaskTheT​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Mask.
        Specified by:
        getMaskTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getMaskTheZ

        public NonNegativeInteger getMaskTheZ​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Mask.
        Specified by:
        getMaskTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getMaskTransform

        public AffineTransform getMaskTransform​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Mask.
        Specified by:
        getMaskTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getMaskWidth

        public Double getMaskWidth​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Width property of Mask.
        Specified by:
        getMaskWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Width property.
      • getMaskX

        public Double getMaskX​(int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Mask.
        Specified by:
        getMaskX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getMaskY

        public Double getMaskY​(int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Mask.
        Specified by:
        getMaskY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getMicrobeamManipulationDescription

        public String getMicrobeamManipulationDescription​(int experimentIndex,
                                                          int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationDescription in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the Description property.
      • getMicrobeamManipulationExperimenterRef

        public String getMicrobeamManipulationExperimenterRef​(int experimentIndex,
                                                              int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationExperimenterRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the ExperimenterRef property.
      • getMicrobeamManipulationID

        public String getMicrobeamManipulationID​(int experimentIndex,
                                                 int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationID in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the ID property.
      • getMicrobeamManipulationROIRef

        public String getMicrobeamManipulationROIRef​(int experimentIndex,
                                                     int microbeamManipulationIndex,
                                                     int ROIRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the ROIRef property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationROIRef in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        ROIRefIndex - ROIRef index.
        Returns:
        the ROIRef property.
      • getMicrobeamManipulationType

        public MicrobeamManipulationType getMicrobeamManipulationType​(int experimentIndex,
                                                                      int microbeamManipulationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of MicrobeamManipulation.
        Specified by:
        getMicrobeamManipulationType in interface MetadataRetrieve
        Parameters:
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        Returns:
        the Type property.
      • getMicroscopeLotNumber

        public String getMicroscopeLotNumber​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Microscope.
        Specified by:
        getMicroscopeLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the LotNumber property.
      • getMicroscopeManufacturer

        public String getMicroscopeManufacturer​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Microscope.
        Specified by:
        getMicroscopeManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Manufacturer property.
      • getMicroscopeModel

        public String getMicroscopeModel​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Microscope.
        Specified by:
        getMicroscopeModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Model property.
      • getMicroscopeSerialNumber

        public String getMicroscopeSerialNumber​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Microscope.
        Specified by:
        getMicroscopeSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the SerialNumber property.
      • getMicroscopeType

        public MicroscopeType getMicroscopeType​(int instrumentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Microscope.
        Specified by:
        getMicroscopeType in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        Returns:
        the Type property.
      • getObjectiveAnnotationRef

        public String getObjectiveAnnotationRef​(int instrumentIndex,
                                                int objectiveIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Objective.
        Specified by:
        getObjectiveAnnotationRef in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getObjectiveCalibratedMagnification

        public Double getObjectiveCalibratedMagnification​(int instrumentIndex,
                                                          int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the CalibratedMagnification property of Objective.
        Specified by:
        getObjectiveCalibratedMagnification in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the CalibratedMagnification property.
      • getObjectiveCorrection

        public Correction getObjectiveCorrection​(int instrumentIndex,
                                                 int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Correction property of Objective.
        Specified by:
        getObjectiveCorrection in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Correction property.
      • getObjectiveID

        public String getObjectiveID​(int instrumentIndex,
                                     int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Objective.
        Specified by:
        getObjectiveID in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the ID property.
      • getObjectiveImmersion

        public Immersion getObjectiveImmersion​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Immersion property of Objective.
        Specified by:
        getObjectiveImmersion in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Immersion property.
      • getObjectiveIris

        public Boolean getObjectiveIris​(int instrumentIndex,
                                        int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Iris property of Objective.
        Specified by:
        getObjectiveIris in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Iris property.
      • getObjectiveLensNA

        public Double getObjectiveLensNA​(int instrumentIndex,
                                         int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the LensNA property of Objective.
        Specified by:
        getObjectiveLensNA in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the LensNA property.
      • getObjectiveLotNumber

        public String getObjectiveLotNumber​(int instrumentIndex,
                                            int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the LotNumber property of Objective.
        Specified by:
        getObjectiveLotNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the LotNumber property.
      • getObjectiveManufacturer

        public String getObjectiveManufacturer​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Manufacturer property of Objective.
        Specified by:
        getObjectiveManufacturer in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Manufacturer property.
      • getObjectiveModel

        public String getObjectiveModel​(int instrumentIndex,
                                        int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the Model property of Objective.
        Specified by:
        getObjectiveModel in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the Model property.
      • getObjectiveNominalMagnification

        public Double getObjectiveNominalMagnification​(int instrumentIndex,
                                                       int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the NominalMagnification property of Objective.
        Specified by:
        getObjectiveNominalMagnification in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the NominalMagnification property.
      • getObjectiveSerialNumber

        public String getObjectiveSerialNumber​(int instrumentIndex,
                                               int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the SerialNumber property of Objective.
        Specified by:
        getObjectiveSerialNumber in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the SerialNumber property.
      • getObjectiveWorkingDistance

        public Length getObjectiveWorkingDistance​(int instrumentIndex,
                                                  int objectiveIndex)
        Description copied from interface: MetadataRetrieve
        Get the WorkingDistance property of Objective.
        Specified by:
        getObjectiveWorkingDistance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        Returns:
        the WorkingDistance property.
      • getObjectiveSettingsCorrectionCollar

        public Double getObjectiveSettingsCorrectionCollar​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the CorrectionCollar property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsCorrectionCollar in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the CorrectionCollar property.
      • getObjectiveSettingsID

        public String getObjectiveSettingsID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getObjectiveSettingsMedium

        public Medium getObjectiveSettingsMedium​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Medium property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsMedium in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Medium property.
      • getObjectiveSettingsRefractiveIndex

        public Double getObjectiveSettingsRefractiveIndex​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the RefractiveIndex property of ObjectiveSettings.
        Specified by:
        getObjectiveSettingsRefractiveIndex in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the RefractiveIndex property.
      • getPixelsBigEndian

        public Boolean getPixelsBigEndian​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the BigEndian property of Pixels.
        Specified by:
        getPixelsBigEndian in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the BigEndian property.
      • getPixelsID

        public String getPixelsID​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Pixels.
        Specified by:
        getPixelsID in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the ID property.
      • getPixelsInterleaved

        public Boolean getPixelsInterleaved​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Interleaved property of Pixels.
        Specified by:
        getPixelsInterleaved in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Interleaved property.
      • getPixelsPhysicalSizeX

        public Length getPixelsPhysicalSizeX​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeX property of Pixels.
        Specified by:
        getPixelsPhysicalSizeX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeX property.
      • getPixelsPhysicalSizeY

        public Length getPixelsPhysicalSizeY​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeY property of Pixels.
        Specified by:
        getPixelsPhysicalSizeY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeY property.
      • getPixelsPhysicalSizeZ

        public Length getPixelsPhysicalSizeZ​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the PhysicalSizeZ property of Pixels.
        Specified by:
        getPixelsPhysicalSizeZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the PhysicalSizeZ property.
      • getPixelsTimeIncrement

        public Time getPixelsTimeIncrement​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the TimeIncrement property of Pixels.
        Specified by:
        getPixelsTimeIncrement in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the TimeIncrement property.
      • getPixelsType

        public PixelType getPixelsType​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Pixels.
        Specified by:
        getPixelsType in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Type property.
      • getPlaneAnnotationRef

        public String getPlaneAnnotationRef​(int imageIndex,
                                            int planeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Plane.
        Specified by:
        getPlaneAnnotationRef in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlaneDeltaT

        public Time getPlaneDeltaT​(int imageIndex,
                                   int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the DeltaT property of Plane.
        Specified by:
        getPlaneDeltaT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the DeltaT property.
      • getPlaneExposureTime

        public Time getPlaneExposureTime​(int imageIndex,
                                         int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExposureTime property of Plane.
        Specified by:
        getPlaneExposureTime in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the ExposureTime property.
      • getPlaneHashSHA1

        public String getPlaneHashSHA1​(int imageIndex,
                                       int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the HashSHA1 property of Plane.
        Specified by:
        getPlaneHashSHA1 in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the HashSHA1 property.
      • getPlanePositionX

        public Length getPlanePositionX​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionX property of Plane.
        Specified by:
        getPlanePositionX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionX property.
      • getPlanePositionY

        public Length getPlanePositionY​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionY property of Plane.
        Specified by:
        getPlanePositionY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionY property.
      • getPlanePositionZ

        public Length getPlanePositionZ​(int imageIndex,
                                        int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionZ property of Plane.
        Specified by:
        getPlanePositionZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the PositionZ property.
      • getPlaneTheC

        public NonNegativeInteger getPlaneTheC​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Plane.
        Specified by:
        getPlaneTheC in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheC property.
      • getPlaneTheT

        public NonNegativeInteger getPlaneTheT​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Plane.
        Specified by:
        getPlaneTheT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheT property.
      • getPlaneTheZ

        public NonNegativeInteger getPlaneTheZ​(int imageIndex,
                                               int planeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Plane.
        Specified by:
        getPlaneTheZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        planeIndex - the Plane index.
        Returns:
        the TheZ property.
      • getPlateAnnotationRef

        public String getPlateAnnotationRef​(int plateIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Plate.
        Specified by:
        getPlateAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlateDescription

        public String getPlateDescription​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Plate.
        Specified by:
        getPlateDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Description property.
      • getPlateExternalIdentifier

        public String getPlateExternalIdentifier​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalIdentifier property of Plate.
        Specified by:
        getPlateExternalIdentifier in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the ExternalIdentifier property.
      • getPlateID

        public String getPlateID​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Plate.
        Specified by:
        getPlateID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the ID property.
      • getPlateName

        public String getPlateName​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Plate.
        Specified by:
        getPlateName in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Name property.
      • getPlateStatus

        public String getPlateStatus​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the Status property of Plate.
        Specified by:
        getPlateStatus in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the Status property.
      • getPlateWellOriginX

        public Length getPlateWellOriginX​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellOriginX property of Plate.
        Specified by:
        getPlateWellOriginX in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the WellOriginX property.
      • getPlateWellOriginY

        public Length getPlateWellOriginY​(int plateIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellOriginY property of Plate.
        Specified by:
        getPlateWellOriginY in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        Returns:
        the WellOriginY property.
      • getPlateAcquisitionAnnotationRef

        public String getPlateAcquisitionAnnotationRef​(int plateIndex,
                                                       int plateAcquisitionIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPlateAcquisitionDescription

        public String getPlateAcquisitionDescription​(int plateIndex,
                                                     int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the Description property.
      • getPlateAcquisitionEndTime

        public Timestamp getPlateAcquisitionEndTime​(int plateIndex,
                                                    int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the EndTime property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionEndTime in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the EndTime property.
      • getPlateAcquisitionID

        public String getPlateAcquisitionID​(int plateIndex,
                                            int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the ID property.
      • getPlateAcquisitionMaximumFieldCount

        public PositiveInteger getPlateAcquisitionMaximumFieldCount​(int plateIndex,
                                                                    int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the MaximumFieldCount property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionMaximumFieldCount in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the MaximumFieldCount property.
      • getPlateAcquisitionName

        public String getPlateAcquisitionName​(int plateIndex,
                                              int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionName in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the Name property.
      • getPlateAcquisitionStartTime

        public Timestamp getPlateAcquisitionStartTime​(int plateIndex,
                                                      int plateAcquisitionIndex)
        Description copied from interface: MetadataRetrieve
        Get the StartTime property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionStartTime in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        Returns:
        the StartTime property.
      • getPlateAcquisitionWellSampleRef

        public String getPlateAcquisitionWellSampleRef​(int plateIndex,
                                                       int plateAcquisitionIndex,
                                                       int wellSampleRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the WellSampleRef property of PlateAcquisition.
        Specified by:
        getPlateAcquisitionWellSampleRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        wellSampleRefIndex - WellSampleRef index.
        Returns:
        the WellSampleRef property.
      • getPointAnnotationRef

        public String getPointAnnotationRef​(int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Point.
        Specified by:
        getPointAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPointFillColor

        public Color getPointFillColor​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Point.
        Specified by:
        getPointFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPointFillRule

        public FillRule getPointFillRule​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Point.
        Specified by:
        getPointFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPointFontFamily

        public FontFamily getPointFontFamily​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Point.
        Specified by:
        getPointFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPointFontSize

        public Length getPointFontSize​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Point.
        Specified by:
        getPointFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPointFontStyle

        public FontStyle getPointFontStyle​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Point.
        Specified by:
        getPointFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPointID

        public String getPointID​(int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Point.
        Specified by:
        getPointID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPointLocked

        public Boolean getPointLocked​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Point.
        Specified by:
        getPointLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPointStrokeColor

        public Color getPointStrokeColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Point.
        Specified by:
        getPointStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPointStrokeDashArray

        public String getPointStrokeDashArray​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Point.
        Specified by:
        getPointStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPointStrokeWidth

        public Length getPointStrokeWidth​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Point.
        Specified by:
        getPointStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPointText

        public String getPointText​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Point.
        Specified by:
        getPointText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPointTheC

        public NonNegativeInteger getPointTheC​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Point.
        Specified by:
        getPointTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPointTheT

        public NonNegativeInteger getPointTheT​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Point.
        Specified by:
        getPointTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPointTheZ

        public NonNegativeInteger getPointTheZ​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Point.
        Specified by:
        getPointTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPointTransform

        public AffineTransform getPointTransform​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Point.
        Specified by:
        getPointTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getPointX

        public Double getPointX​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Point.
        Specified by:
        getPointX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getPointY

        public Double getPointY​(int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Point.
        Specified by:
        getPointY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getPolygonAnnotationRef

        public String getPolygonAnnotationRef​(int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Polygon.
        Specified by:
        getPolygonAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPolygonFillColor

        public Color getPolygonFillColor​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Polygon.
        Specified by:
        getPolygonFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPolygonFillRule

        public FillRule getPolygonFillRule​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Polygon.
        Specified by:
        getPolygonFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPolygonFontFamily

        public FontFamily getPolygonFontFamily​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Polygon.
        Specified by:
        getPolygonFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPolygonFontSize

        public Length getPolygonFontSize​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Polygon.
        Specified by:
        getPolygonFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPolygonFontStyle

        public FontStyle getPolygonFontStyle​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Polygon.
        Specified by:
        getPolygonFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPolygonID

        public String getPolygonID​(int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Polygon.
        Specified by:
        getPolygonID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPolygonLocked

        public Boolean getPolygonLocked​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Polygon.
        Specified by:
        getPolygonLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPolygonPoints

        public String getPolygonPoints​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Points property of Polygon.
        Specified by:
        getPolygonPoints in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Points property.
      • getPolygonStrokeColor

        public Color getPolygonStrokeColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Polygon.
        Specified by:
        getPolygonStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPolygonStrokeDashArray

        public String getPolygonStrokeDashArray​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Polygon.
        Specified by:
        getPolygonStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPolygonStrokeWidth

        public Length getPolygonStrokeWidth​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Polygon.
        Specified by:
        getPolygonStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPolygonText

        public String getPolygonText​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Polygon.
        Specified by:
        getPolygonText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPolygonTheC

        public NonNegativeInteger getPolygonTheC​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Polygon.
        Specified by:
        getPolygonTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPolygonTheT

        public NonNegativeInteger getPolygonTheT​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Polygon.
        Specified by:
        getPolygonTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPolygonTheZ

        public NonNegativeInteger getPolygonTheZ​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Polygon.
        Specified by:
        getPolygonTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPolygonTransform

        public AffineTransform getPolygonTransform​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Polygon.
        Specified by:
        getPolygonTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getPolylineAnnotationRef

        public String getPolylineAnnotationRef​(int ROIIndex,
                                               int shapeIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Polyline.
        Specified by:
        getPolylineAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getPolylineFillColor

        public Color getPolylineFillColor​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Polyline.
        Specified by:
        getPolylineFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getPolylineFillRule

        public FillRule getPolylineFillRule​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Polyline.
        Specified by:
        getPolylineFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getPolylineFontFamily

        public FontFamily getPolylineFontFamily​(int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Polyline.
        Specified by:
        getPolylineFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getPolylineFontSize

        public Length getPolylineFontSize​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Polyline.
        Specified by:
        getPolylineFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getPolylineFontStyle

        public FontStyle getPolylineFontStyle​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Polyline.
        Specified by:
        getPolylineFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getPolylineID

        public String getPolylineID​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Polyline.
        Specified by:
        getPolylineID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getPolylineLocked

        public Boolean getPolylineLocked​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Polyline.
        Specified by:
        getPolylineLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getPolylineMarkerEnd

        public Marker getPolylineMarkerEnd​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerEnd property of Polyline.
        Specified by:
        getPolylineMarkerEnd in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerEnd property.
      • getPolylineMarkerStart

        public Marker getPolylineMarkerStart​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the MarkerStart property of Polyline.
        Specified by:
        getPolylineMarkerStart in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the MarkerStart property.
      • getPolylinePoints

        public String getPolylinePoints​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Points property of Polyline.
        Specified by:
        getPolylinePoints in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Points property.
      • getPolylineStrokeColor

        public Color getPolylineStrokeColor​(int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Polyline.
        Specified by:
        getPolylineStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getPolylineStrokeDashArray

        public String getPolylineStrokeDashArray​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Polyline.
        Specified by:
        getPolylineStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getPolylineStrokeWidth

        public Length getPolylineStrokeWidth​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Polyline.
        Specified by:
        getPolylineStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getPolylineText

        public String getPolylineText​(int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Polyline.
        Specified by:
        getPolylineText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getPolylineTheC

        public NonNegativeInteger getPolylineTheC​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Polyline.
        Specified by:
        getPolylineTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getPolylineTheT

        public NonNegativeInteger getPolylineTheT​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Polyline.
        Specified by:
        getPolylineTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getPolylineTheZ

        public NonNegativeInteger getPolylineTheZ​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Polyline.
        Specified by:
        getPolylineTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getPolylineTransform

        public AffineTransform getPolylineTransform​(int ROIIndex,
                                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Polyline.
        Specified by:
        getPolylineTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getProjectAnnotationRef

        public String getProjectAnnotationRef​(int projectIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Project.
        Specified by:
        getProjectAnnotationRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getProjectDatasetRef

        public String getProjectDatasetRef​(int projectIndex,
                                           int datasetRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the DatasetRef property of Project.
        Specified by:
        getProjectDatasetRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        datasetRefIndex - DatasetRef index.
        Returns:
        the DatasetRef property.
      • getProjectDescription

        public String getProjectDescription​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Project.
        Specified by:
        getProjectDescription in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the Description property.
      • getProjectExperimenterGroupRef

        public String getProjectExperimenterGroupRef​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterGroupRef property of Project.
        Specified by:
        getProjectExperimenterGroupRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ExperimenterGroupRef property.
      • getProjectExperimenterRef

        public String getProjectExperimenterRef​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExperimenterRef property of Project.
        Specified by:
        getProjectExperimenterRef in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ExperimenterRef property.
      • getProjectID

        public String getProjectID​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Project.
        Specified by:
        getProjectID in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the ID property.
      • getProjectName

        public String getProjectName​(int projectIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Project.
        Specified by:
        getProjectName in interface MetadataRetrieve
        Parameters:
        projectIndex - the Project index.
        Returns:
        the Name property.
      • getROIAnnotationRef

        public String getROIAnnotationRef​(int ROIIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of ROI.
        Specified by:
        getROIAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getROIDescription

        public String getROIDescription​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of ROI.
        Specified by:
        getROIDescription in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the Description property.
      • getROIID

        public String getROIID​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of ROI.
        Specified by:
        getROIID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the ID property.
      • getROIName

        public String getROIName​(int ROIIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of ROI.
        Specified by:
        getROIName in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        Returns:
        the Name property.
      • getReagentAnnotationRef

        public String getReagentAnnotationRef​(int screenIndex,
                                              int reagentIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Reagent.
        Specified by:
        getReagentAnnotationRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getReagentDescription

        public String getReagentDescription​(int screenIndex,
                                            int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Reagent.
        Specified by:
        getReagentDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the Description property.
      • getReagentID

        public String getReagentID​(int screenIndex,
                                   int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Reagent.
        Specified by:
        getReagentID in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the ID property.
      • getReagentName

        public String getReagentName​(int screenIndex,
                                     int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Reagent.
        Specified by:
        getReagentName in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the Name property.
      • getReagentReagentIdentifier

        public String getReagentReagentIdentifier​(int screenIndex,
                                                  int reagentIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentIdentifier property of Reagent.
        Specified by:
        getReagentReagentIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        Returns:
        the ReagentIdentifier property.
      • getRectangleAnnotationRef

        public String getRectangleAnnotationRef​(int ROIIndex,
                                                int shapeIndex,
                                                int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Rectangle.
        Specified by:
        getRectangleAnnotationRef in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getRectangleFillColor

        public Color getRectangleFillColor​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillColor property of Rectangle.
        Specified by:
        getRectangleFillColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillColor property.
      • getRectangleFillRule

        public FillRule getRectangleFillRule​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FillRule property of Rectangle.
        Specified by:
        getRectangleFillRule in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FillRule property.
      • getRectangleFontFamily

        public FontFamily getRectangleFontFamily​(int ROIIndex,
                                                 int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontFamily property of Rectangle.
        Specified by:
        getRectangleFontFamily in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontFamily property.
      • getRectangleFontSize

        public Length getRectangleFontSize​(int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontSize property of Rectangle.
        Specified by:
        getRectangleFontSize in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontSize property.
      • getRectangleFontStyle

        public FontStyle getRectangleFontStyle​(int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the FontStyle property of Rectangle.
        Specified by:
        getRectangleFontStyle in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the FontStyle property.
      • getRectangleHeight

        public Double getRectangleHeight​(int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Height property of Rectangle.
        Specified by:
        getRectangleHeight in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Height property.
      • getRectangleID

        public String getRectangleID​(int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Rectangle.
        Specified by:
        getRectangleID in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the ID property.
      • getRectangleLocked

        public Boolean getRectangleLocked​(int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Locked property of Rectangle.
        Specified by:
        getRectangleLocked in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Locked property.
      • getRectangleStrokeColor

        public Color getRectangleStrokeColor​(int ROIIndex,
                                             int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeColor property of Rectangle.
        Specified by:
        getRectangleStrokeColor in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeColor property.
      • getRectangleStrokeDashArray

        public String getRectangleStrokeDashArray​(int ROIIndex,
                                                  int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeDashArray property of Rectangle.
        Specified by:
        getRectangleStrokeDashArray in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeDashArray property.
      • getRectangleStrokeWidth

        public Length getRectangleStrokeWidth​(int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the StrokeWidth property of Rectangle.
        Specified by:
        getRectangleStrokeWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the StrokeWidth property.
      • getRectangleText

        public String getRectangleText​(int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Text property of Rectangle.
        Specified by:
        getRectangleText in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Text property.
      • getRectangleTheC

        public NonNegativeInteger getRectangleTheC​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheC property of Rectangle.
        Specified by:
        getRectangleTheC in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheC property.
      • getRectangleTheT

        public NonNegativeInteger getRectangleTheT​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheT property of Rectangle.
        Specified by:
        getRectangleTheT in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheT property.
      • getRectangleTheZ

        public NonNegativeInteger getRectangleTheZ​(int ROIIndex,
                                                   int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the TheZ property of Rectangle.
        Specified by:
        getRectangleTheZ in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the TheZ property.
      • getRectangleTransform

        public AffineTransform getRectangleTransform​(int ROIIndex,
                                                     int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transform property of Rectangle.
        Specified by:
        getRectangleTransform in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Transform property.
      • getRectangleWidth

        public Double getRectangleWidth​(int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Width property of Rectangle.
        Specified by:
        getRectangleWidth in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Width property.
      • getRectangleX

        public Double getRectangleX​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of Rectangle.
        Specified by:
        getRectangleX in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the X property.
      • getRectangleY

        public Double getRectangleY​(int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of Rectangle.
        Specified by:
        getRectangleY in interface MetadataRetrieve
        Parameters:
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        Returns:
        the Y property.
      • getScreenAnnotationRef

        public String getScreenAnnotationRef​(int screenIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Screen.
        Specified by:
        getScreenAnnotationRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getScreenDescription

        public String getScreenDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of Screen.
        Specified by:
        getScreenDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Description property.
      • getScreenID

        public String getScreenID​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Screen.
        Specified by:
        getScreenID in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ID property.
      • getScreenName

        public String getScreenName​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of Screen.
        Specified by:
        getScreenName in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Name property.
      • getScreenPlateRef

        public String getScreenPlateRef​(int screenIndex,
                                        int plateRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the PlateRef property of Screen.
        Specified by:
        getScreenPlateRef in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        plateRefIndex - PlateRef index.
        Returns:
        the PlateRef property.
      • getScreenProtocolDescription

        public String getScreenProtocolDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ProtocolDescription property of Screen.
        Specified by:
        getScreenProtocolDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ProtocolDescription property.
      • getScreenProtocolIdentifier

        public String getScreenProtocolIdentifier​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ProtocolIdentifier property of Screen.
        Specified by:
        getScreenProtocolIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ProtocolIdentifier property.
      • getScreenReagentSetDescription

        public String getScreenReagentSetDescription​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentSetDescription property of Screen.
        Specified by:
        getScreenReagentSetDescription in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ReagentSetDescription property.
      • getScreenReagentSetIdentifier

        public String getScreenReagentSetIdentifier​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentSetIdentifier property of Screen.
        Specified by:
        getScreenReagentSetIdentifier in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the ReagentSetIdentifier property.
      • getScreenType

        public String getScreenType​(int screenIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Screen.
        Specified by:
        getScreenType in interface MetadataRetrieve
        Parameters:
        screenIndex - the Screen index.
        Returns:
        the Type property.
      • getStageLabelName

        public String getStageLabelName​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Name property of StageLabel.
        Specified by:
        getStageLabelName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Name property.
      • getStageLabelX

        public Length getStageLabelX​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the X property of StageLabel.
        Specified by:
        getStageLabelX in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the X property.
      • getStageLabelY

        public Length getStageLabelY​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Y property of StageLabel.
        Specified by:
        getStageLabelY in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Y property.
      • getStageLabelZ

        public Length getStageLabelZ​(int imageIndex)
        Description copied from interface: MetadataRetrieve
        Get the Z property of StageLabel.
        Specified by:
        getStageLabelZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        Returns:
        the Z property.
      • getTagAnnotationAnnotationRef

        public String getTagAnnotationAnnotationRef​(int tagAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TagAnnotation.
        Specified by:
        getTagAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTagAnnotationAnnotator

        public String getTagAnnotationAnnotator​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TagAnnotation.
        Specified by:
        getTagAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Annotator property.
      • getTagAnnotationDescription

        public String getTagAnnotationDescription​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TagAnnotation.
        Specified by:
        getTagAnnotationDescription in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Description property.
      • getTagAnnotationID

        public String getTagAnnotationID​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TagAnnotation.
        Specified by:
        getTagAnnotationID in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the ID property.
      • getTagAnnotationNamespace

        public String getTagAnnotationNamespace​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TagAnnotation.
        Specified by:
        getTagAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Namespace property.
      • getTagAnnotationValue

        public String getTagAnnotationValue​(int tagAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TagAnnotation.
        Specified by:
        getTagAnnotationValue in interface MetadataRetrieve
        Parameters:
        tagAnnotationIndex - the TagAnnotation index.
        Returns:
        the Value property.
      • getTermAnnotationAnnotationRef

        public String getTermAnnotationAnnotationRef​(int termAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TermAnnotation.
        Specified by:
        getTermAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTermAnnotationAnnotator

        public String getTermAnnotationAnnotator​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TermAnnotation.
        Specified by:
        getTermAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Annotator property.
      • getTermAnnotationDescription

        public String getTermAnnotationDescription​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TermAnnotation.
        Specified by:
        getTermAnnotationDescription in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Description property.
      • getTermAnnotationID

        public String getTermAnnotationID​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TermAnnotation.
        Specified by:
        getTermAnnotationID in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the ID property.
      • getTermAnnotationNamespace

        public String getTermAnnotationNamespace​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TermAnnotation.
        Specified by:
        getTermAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Namespace property.
      • getTermAnnotationValue

        public String getTermAnnotationValue​(int termAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TermAnnotation.
        Specified by:
        getTermAnnotationValue in interface MetadataRetrieve
        Parameters:
        termAnnotationIndex - the TermAnnotation index.
        Returns:
        the Value property.
      • getTiffDataFirstC

        public NonNegativeInteger getTiffDataFirstC​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstC property of TiffData.
        Specified by:
        getTiffDataFirstC in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstC property.
      • getTiffDataFirstT

        public NonNegativeInteger getTiffDataFirstT​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstT property of TiffData.
        Specified by:
        getTiffDataFirstT in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstT property.
      • getTiffDataFirstZ

        public NonNegativeInteger getTiffDataFirstZ​(int imageIndex,
                                                    int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FirstZ property of TiffData.
        Specified by:
        getTiffDataFirstZ in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FirstZ property.
      • getTiffDataIFD

        public NonNegativeInteger getTiffDataIFD​(int imageIndex,
                                                 int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the IFD property of TiffData.
        Specified by:
        getTiffDataIFD in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the IFD property.
      • getTiffDataPlaneCount

        public NonNegativeInteger getTiffDataPlaneCount​(int imageIndex,
                                                        int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the PlaneCount property of TiffData.
        Specified by:
        getTiffDataPlaneCount in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the PlaneCount property.
      • getTimestampAnnotationAnnotationRef

        public String getTimestampAnnotationAnnotationRef​(int timestampAnnotationIndex,
                                                          int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getTimestampAnnotationAnnotator

        public String getTimestampAnnotationAnnotator​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Annotator property.
      • getTimestampAnnotationDescription

        public String getTimestampAnnotationDescription​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationDescription in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Description property.
      • getTimestampAnnotationID

        public String getTimestampAnnotationID​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationID in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the ID property.
      • getTimestampAnnotationNamespace

        public String getTimestampAnnotationNamespace​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Namespace property.
      • getTimestampAnnotationValue

        public Timestamp getTimestampAnnotationValue​(int timestampAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of TimestampAnnotation.
        Specified by:
        getTimestampAnnotationValue in interface MetadataRetrieve
        Parameters:
        timestampAnnotationIndex - the TimestampAnnotation index.
        Returns:
        the Value property.
      • getTransmittanceRangeCutIn

        public Length getTransmittanceRangeCutIn​(int instrumentIndex,
                                                 int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutIn property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutIn in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutIn property.
      • getTransmittanceRangeCutInTolerance

        public Length getTransmittanceRangeCutInTolerance​(int instrumentIndex,
                                                          int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutInTolerance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutInTolerance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutInTolerance property.
      • getTransmittanceRangeCutOut

        public Length getTransmittanceRangeCutOut​(int instrumentIndex,
                                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutOut property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutOut in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutOut property.
      • getTransmittanceRangeCutOutTolerance

        public Length getTransmittanceRangeCutOutTolerance​(int instrumentIndex,
                                                           int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the CutOutTolerance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeCutOutTolerance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the CutOutTolerance property.
      • getTransmittanceRangeTransmittance

        public PercentFraction getTransmittanceRangeTransmittance​(int instrumentIndex,
                                                                  int filterIndex)
        Description copied from interface: MetadataRetrieve
        Get the Transmittance property of TransmittanceRange.
        Specified by:
        getTransmittanceRangeTransmittance in interface MetadataRetrieve
        Parameters:
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        Returns:
        the Transmittance property.
      • getUUIDFileName

        public String getUUIDFileName​(int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataRetrieve
        Get the FileName property of UUID.
        Specified by:
        getUUIDFileName in interface MetadataRetrieve
        Parameters:
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
        Returns:
        the FileName property.
      • getWellAnnotationRef

        public String getWellAnnotationRef​(int plateIndex,
                                           int wellIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of Well.
        Specified by:
        getWellAnnotationRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getWellColor

        public Color getWellColor​(int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Color property of Well.
        Specified by:
        getWellColor in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Color property.
      • getWellColumn

        public NonNegativeInteger getWellColumn​(int plateIndex,
                                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Column property of Well.
        Specified by:
        getWellColumn in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Column property.
      • getWellExternalDescription

        public String getWellExternalDescription​(int plateIndex,
                                                 int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalDescription property of Well.
        Specified by:
        getWellExternalDescription in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ExternalDescription property.
      • getWellExternalIdentifier

        public String getWellExternalIdentifier​(int plateIndex,
                                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ExternalIdentifier property of Well.
        Specified by:
        getWellExternalIdentifier in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ExternalIdentifier property.
      • getWellID

        public String getWellID​(int plateIndex,
                                int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of Well.
        Specified by:
        getWellID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ID property.
      • getWellReagentRef

        public String getWellReagentRef​(int plateIndex,
                                        int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the ReagentRef property of Well.
        Specified by:
        getWellReagentRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the ReagentRef property.
      • getWellRow

        public NonNegativeInteger getWellRow​(int plateIndex,
                                             int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Row property of Well.
        Specified by:
        getWellRow in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Row property.
      • getWellType

        public String getWellType​(int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataRetrieve
        Get the Type property of Well.
        Specified by:
        getWellType in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        Returns:
        the Type property.
      • getWellSampleID

        public String getWellSampleID​(int plateIndex,
                                      int wellIndex,
                                      int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of WellSample.
        Specified by:
        getWellSampleID in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the ID property.
      • getWellSampleImageRef

        public String getWellSampleImageRef​(int plateIndex,
                                            int wellIndex,
                                            int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the ImageRef property of WellSample.
        Specified by:
        getWellSampleImageRef in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the ImageRef property.
      • getWellSampleIndex

        public NonNegativeInteger getWellSampleIndex​(int plateIndex,
                                                     int wellIndex,
                                                     int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the Index property of WellSample.
        Specified by:
        getWellSampleIndex in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the Index property.
      • getWellSamplePositionX

        public Length getWellSamplePositionX​(int plateIndex,
                                             int wellIndex,
                                             int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionX property of WellSample.
        Specified by:
        getWellSamplePositionX in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the PositionX property.
      • getWellSamplePositionY

        public Length getWellSamplePositionY​(int plateIndex,
                                             int wellIndex,
                                             int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the PositionY property of WellSample.
        Specified by:
        getWellSamplePositionY in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the PositionY property.
      • getWellSampleTimepoint

        public Timestamp getWellSampleTimepoint​(int plateIndex,
                                                int wellIndex,
                                                int wellSampleIndex)
        Description copied from interface: MetadataRetrieve
        Get the Timepoint property of WellSample.
        Specified by:
        getWellSampleTimepoint in interface MetadataRetrieve
        Parameters:
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
        Returns:
        the Timepoint property.
      • getXMLAnnotationAnnotationRef

        public String getXMLAnnotationAnnotationRef​(int XMLAnnotationIndex,
                                                    int annotationRefIndex)
        Description copied from interface: MetadataRetrieve
        Get the AnnotationRef property of XMLAnnotation.
        Specified by:
        getXMLAnnotationAnnotationRef in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        annotationRefIndex - AnnotationRef index.
        Returns:
        the AnnotationRef property.
      • getXMLAnnotationAnnotator

        public String getXMLAnnotationAnnotator​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Annotator property of XMLAnnotation.
        Specified by:
        getXMLAnnotationAnnotator in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Annotator property.
      • getXMLAnnotationDescription

        public String getXMLAnnotationDescription​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Description property of XMLAnnotation.
        Specified by:
        getXMLAnnotationDescription in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Description property.
      • getXMLAnnotationID

        public String getXMLAnnotationID​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the ID property of XMLAnnotation.
        Specified by:
        getXMLAnnotationID in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the ID property.
      • getXMLAnnotationNamespace

        public String getXMLAnnotationNamespace​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Namespace property of XMLAnnotation.
        Specified by:
        getXMLAnnotationNamespace in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Namespace property.
      • getXMLAnnotationValue

        public String getXMLAnnotationValue​(int XMLAnnotationIndex)
        Description copied from interface: MetadataRetrieve
        Get the Value property of XMLAnnotation.
        Specified by:
        getXMLAnnotationValue in interface MetadataRetrieve
        Parameters:
        XMLAnnotationIndex - the XMLAnnotation index.
        Returns:
        the Value property.
      • setUUID

        public void setUUID​(String uuid)
        Sets the UUID associated with this collection of metadata.
        Specified by:
        setUUID in interface MetadataStore
        Parameters:
        uuid - the UUID to set.
      • setMapAnnotationValue

        public void setMapAnnotationValue​(List<MapPair> value,
                                          int mapAnnotationIndex)
        Sets the Map value associated with this annotation
        Specified by:
        setMapAnnotationValue in interface MetadataStore
        Parameters:
        value - the MapAnnotation values to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setGenericExcitationSourceMap

        public void setGenericExcitationSourceMap​(List<MapPair> map,
                                                  int instrumentIndex,
                                                  int lightSourceIndex)
        Sets the Map value associated with this generic light source
        Specified by:
        setGenericExcitationSourceMap in interface MetadataStore
        Parameters:
        map - the MapAnnotation values to set.
        instrumentIndex - the Instrument index.
      • setImagingEnvironmentMap

        public void setImagingEnvironmentMap​(List<MapPair> map,
                                             int imageIndex)
        Sets the Map value associated with this imaging environment
        Specified by:
        setImagingEnvironmentMap in interface MetadataStore
        Parameters:
        map - the MapAnnotation values to set.
        imageIndex - the Image index.
      • setArcAnnotationRef

        public void setArcAnnotationRef​(String annotation,
                                        int instrumentIndex,
                                        int lightSourceIndex,
                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Arc.
        Specified by:
        setArcAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setArcID

        public void setArcID​(String id,
                             int instrumentIndex,
                             int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Arc.
        Specified by:
        setArcID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcLotNumber

        public void setArcLotNumber​(String lotNumber,
                                    int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Arc.
        Specified by:
        setArcLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcManufacturer

        public void setArcManufacturer​(String manufacturer,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Arc.
        Specified by:
        setArcManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcModel

        public void setArcModel​(String model,
                                int instrumentIndex,
                                int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Arc.
        Specified by:
        setArcModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcPower

        public void setArcPower​(Power power,
                                int instrumentIndex,
                                int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Arc.
        Specified by:
        setArcPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcSerialNumber

        public void setArcSerialNumber​(String serialNumber,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Arc.
        Specified by:
        setArcSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setArcType

        public void setArcType​(ArcType type,
                               int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Arc.
        Specified by:
        setArcType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setBinaryFileBinData

        public void setBinaryFileBinData​(byte[] base64Binary,
                                         int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setBinaryFileBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinData

        public void setMaskBinData​(byte[] base64Binary,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setMaskBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinData

        public void setPixelsBinData​(byte[] base64Binary,
                                     int imageIndex,
                                     int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Base64Binary property of BinData.
        Specified by:
        setPixelsBinData in interface MetadataStore
        Parameters:
        base64Binary - Base64Binary to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataBigEndian

        public void setBinaryFileBinDataBigEndian​(Boolean bigEndian,
                                                  int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setBinaryFileBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataBigEndian

        public void setMaskBinDataBigEndian​(Boolean bigEndian,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setMaskBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataBigEndian

        public void setPixelsBinDataBigEndian​(Boolean bigEndian,
                                              int imageIndex,
                                              int binDataIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of BinData.
        Specified by:
        setPixelsBinDataBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataCompression

        public void setBinaryFileBinDataCompression​(Compression compression,
                                                    int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setBinaryFileBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataCompression

        public void setMaskBinDataCompression​(Compression compression,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setMaskBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataCompression

        public void setPixelsBinDataCompression​(Compression compression,
                                                int imageIndex,
                                                int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Compression property of BinData.
        Specified by:
        setPixelsBinDataCompression in interface MetadataStore
        Parameters:
        compression - Compression to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileBinDataLength

        public void setBinaryFileBinDataLength​(NonNegativeLong length,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setBinaryFileBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setMaskBinDataLength

        public void setMaskBinDataLength​(NonNegativeLong length,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setMaskBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPixelsBinDataLength

        public void setPixelsBinDataLength​(NonNegativeLong length,
                                           int imageIndex,
                                           int binDataIndex)
        Description copied from interface: MetadataStore
        Set the Length property of BinData.
        Specified by:
        setPixelsBinDataLength in interface MetadataStore
        Parameters:
        length - Length to set.
        imageIndex - the Image index.
        binDataIndex - the BinData index.
      • setBinaryFileFileName

        public void setBinaryFileFileName​(String fileName,
                                          int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the FileName property of BinaryFile.
        Specified by:
        setBinaryFileFileName in interface MetadataStore
        Parameters:
        fileName - FileName to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryFileMIMEType

        public void setBinaryFileMIMEType​(String mimeType,
                                          int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the MIMEType property of BinaryFile.
        Specified by:
        setBinaryFileMIMEType in interface MetadataStore
        Parameters:
        mimeType - MIMEType to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryFileSize

        public void setBinaryFileSize​(NonNegativeLong size,
                                      int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Size property of BinaryFile.
        Specified by:
        setBinaryFileSize in interface MetadataStore
        Parameters:
        size - Size to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setBinaryOnlyMetadataFile

        public void setBinaryOnlyMetadataFile​(String metadataFile)
        Description copied from interface: MetadataStore
        Set the MetadataFile property of BinaryOnly.
        Specified by:
        setBinaryOnlyMetadataFile in interface MetadataStore
        Parameters:
        metadataFile - MetadataFile to set.
      • setBinaryOnlyUUID

        public void setBinaryOnlyUUID​(String uuid)
        Description copied from interface: MetadataStore
        Set the UUID property of BinaryOnly.
        Specified by:
        setBinaryOnlyUUID in interface MetadataStore
        Parameters:
        uuid - UUID to set.
      • setBooleanAnnotationAnnotationRef

        public void setBooleanAnnotationAnnotationRef​(String annotation,
                                                      int booleanAnnotationIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setBooleanAnnotationAnnotator

        public void setBooleanAnnotationAnnotator​(String annotator,
                                                  int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationDescription

        public void setBooleanAnnotationDescription​(String description,
                                                    int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationID

        public void setBooleanAnnotationID​(String id,
                                           int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationNamespace

        public void setBooleanAnnotationNamespace​(String namespace,
                                                  int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setBooleanAnnotationValue

        public void setBooleanAnnotationValue​(Boolean value,
                                              int booleanAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of BooleanAnnotation.
        Specified by:
        setBooleanAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        booleanAnnotationIndex - the BooleanAnnotation index.
      • setChannelAcquisitionMode

        public void setChannelAcquisitionMode​(AcquisitionMode acquisitionMode,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the AcquisitionMode property of Channel.
        Specified by:
        setChannelAcquisitionMode in interface MetadataStore
        Parameters:
        acquisitionMode - AcquisitionMode to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelAnnotationRef

        public void setChannelAnnotationRef​(String annotation,
                                            int imageIndex,
                                            int channelIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Channel.
        Specified by:
        setChannelAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index (unused).
      • setChannelColor

        public void setChannelColor​(Color color,
                                    int imageIndex,
                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the Color property of Channel.
        Specified by:
        setChannelColor in interface MetadataStore
        Parameters:
        color - Color to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelContrastMethod

        public void setChannelContrastMethod​(ContrastMethod contrastMethod,
                                             int imageIndex,
                                             int channelIndex)
        Description copied from interface: MetadataStore
        Set the ContrastMethod property of Channel.
        Specified by:
        setChannelContrastMethod in interface MetadataStore
        Parameters:
        contrastMethod - ContrastMethod to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelEmissionWavelength

        public void setChannelEmissionWavelength​(Length emissionWavelength,
                                                 int imageIndex,
                                                 int channelIndex)
        Description copied from interface: MetadataStore
        Set the EmissionWavelength property of Channel.
        Specified by:
        setChannelEmissionWavelength in interface MetadataStore
        Parameters:
        emissionWavelength - EmissionWavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelExcitationWavelength

        public void setChannelExcitationWavelength​(Length excitationWavelength,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationWavelength property of Channel.
        Specified by:
        setChannelExcitationWavelength in interface MetadataStore
        Parameters:
        excitationWavelength - ExcitationWavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelFilterSetRef

        public void setChannelFilterSetRef​(String filterSet,
                                           int imageIndex,
                                           int channelIndex)
        Description copied from interface: MetadataStore
        Set the FilterSetRef property of Channel.
        Specified by:
        setChannelFilterSetRef in interface MetadataStore
        Parameters:
        filterSet - FilterSetRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelFluor

        public void setChannelFluor​(String fluor,
                                    int imageIndex,
                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the Fluor property of Channel.
        Specified by:
        setChannelFluor in interface MetadataStore
        Parameters:
        fluor - Fluor to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelID

        public void setChannelID​(String id,
                                 int imageIndex,
                                 int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Channel.
        Specified by:
        setChannelID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelIlluminationType

        public void setChannelIlluminationType​(IlluminationType illuminationType,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the IlluminationType property of Channel.
        Specified by:
        setChannelIlluminationType in interface MetadataStore
        Parameters:
        illuminationType - IlluminationType to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelNDFilter

        public void setChannelNDFilter​(Double ndFilter,
                                       int imageIndex,
                                       int channelIndex)
        Description copied from interface: MetadataStore
        Set the NDFilter property of Channel.
        Specified by:
        setChannelNDFilter in interface MetadataStore
        Parameters:
        ndFilter - NDFilter to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelName

        public void setChannelName​(String name,
                                   int imageIndex,
                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Channel.
        Specified by:
        setChannelName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelPinholeSize

        public void setChannelPinholeSize​(Length pinholeSize,
                                          int imageIndex,
                                          int channelIndex)
        Description copied from interface: MetadataStore
        Set the PinholeSize property of Channel.
        Specified by:
        setChannelPinholeSize in interface MetadataStore
        Parameters:
        pinholeSize - PinholeSize to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelPockelCellSetting

        public void setChannelPockelCellSetting​(Integer pockelCellSetting,
                                                int imageIndex,
                                                int channelIndex)
        Description copied from interface: MetadataStore
        Set the PockelCellSetting property of Channel.
        Specified by:
        setChannelPockelCellSetting in interface MetadataStore
        Parameters:
        pockelCellSetting - PockelCellSetting to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setChannelSamplesPerPixel

        public void setChannelSamplesPerPixel​(PositiveInteger samplesPerPixel,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the SamplesPerPixel property of Channel.
        Specified by:
        setChannelSamplesPerPixel in interface MetadataStore
        Parameters:
        samplesPerPixel - SamplesPerPixel to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setCommentAnnotationAnnotationRef

        public void setCommentAnnotationAnnotationRef​(String annotation,
                                                      int commentAnnotationIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of CommentAnnotation.
        Specified by:
        setCommentAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        commentAnnotationIndex - the CommentAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setCommentAnnotationAnnotator

        public void setCommentAnnotationAnnotator​(String annotator,
                                                  int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of CommentAnnotation.
        Specified by:
        setCommentAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationDescription

        public void setCommentAnnotationDescription​(String description,
                                                    int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of CommentAnnotation.
        Specified by:
        setCommentAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationID

        public void setCommentAnnotationID​(String id,
                                           int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of CommentAnnotation.
        Specified by:
        setCommentAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationNamespace

        public void setCommentAnnotationNamespace​(String namespace,
                                                  int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of CommentAnnotation.
        Specified by:
        setCommentAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setCommentAnnotationValue

        public void setCommentAnnotationValue​(String value,
                                              int commentAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of CommentAnnotation.
        Specified by:
        setCommentAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        commentAnnotationIndex - the CommentAnnotation index.
      • setDatasetAnnotationRef

        public void setDatasetAnnotationRef​(String annotation,
                                            int datasetIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Dataset.
        Specified by:
        setDatasetAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        datasetIndex - the Dataset index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDatasetDescription

        public void setDatasetDescription​(String description,
                                          int datasetIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Dataset.
        Specified by:
        setDatasetDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        datasetIndex - the Dataset index.
      • setDatasetExperimenterGroupRef

        public void setDatasetExperimenterGroupRef​(String experimenterGroup,
                                                   int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Dataset.
        Specified by:
        setDatasetExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        datasetIndex - the Dataset index.
      • setDatasetExperimenterRef

        public void setDatasetExperimenterRef​(String experimenter,
                                              int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Dataset.
        Specified by:
        setDatasetExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        datasetIndex - the Dataset index.
      • setDatasetID

        public void setDatasetID​(String id,
                                 int datasetIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Dataset.
        Specified by:
        setDatasetID in interface MetadataStore
        Parameters:
        id - ID to set.
        datasetIndex - the Dataset index.
      • setDatasetImageRef

        public void setDatasetImageRef​(String image,
                                       int datasetIndex,
                                       int imageRefIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of Dataset.
        Specified by:
        setDatasetImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        datasetIndex - the Dataset index.
        imageRefIndex - ImageRef index (unused).
      • setDatasetName

        public void setDatasetName​(String name,
                                   int datasetIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Dataset.
        Specified by:
        setDatasetName in interface MetadataStore
        Parameters:
        name - Name to set.
        datasetIndex - the Dataset index.
      • setDetectorAmplificationGain

        public void setDetectorAmplificationGain​(Double amplificationGain,
                                                 int instrumentIndex,
                                                 int detectorIndex)
        Description copied from interface: MetadataStore
        Set the AmplificationGain property of Detector.
        Specified by:
        setDetectorAmplificationGain in interface MetadataStore
        Parameters:
        amplificationGain - AmplificationGain to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorAnnotationRef

        public void setDetectorAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int detectorIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Detector.
        Specified by:
        setDetectorAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDetectorGain

        public void setDetectorGain​(Double gain,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Gain property of Detector.
        Specified by:
        setDetectorGain in interface MetadataStore
        Parameters:
        gain - Gain to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorID

        public void setDetectorID​(String id,
                                  int instrumentIndex,
                                  int detectorIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Detector.
        Specified by:
        setDetectorID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorLotNumber

        public void setDetectorLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int detectorIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Detector.
        Specified by:
        setDetectorLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorManufacturer

        public void setDetectorManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Detector.
        Specified by:
        setDetectorManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorModel

        public void setDetectorModel​(String model,
                                     int instrumentIndex,
                                     int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Detector.
        Specified by:
        setDetectorModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorOffset

        public void setDetectorOffset​(Double offset,
                                      int instrumentIndex,
                                      int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Offset property of Detector.
        Specified by:
        setDetectorOffset in interface MetadataStore
        Parameters:
        offset - Offset to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorSerialNumber

        public void setDetectorSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int detectorIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Detector.
        Specified by:
        setDetectorSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorType

        public void setDetectorType​(DetectorType type,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Detector.
        Specified by:
        setDetectorType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorVoltage

        public void setDetectorVoltage​(ElectricPotential voltage,
                                       int instrumentIndex,
                                       int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Voltage property of Detector.
        Specified by:
        setDetectorVoltage in interface MetadataStore
        Parameters:
        voltage - Voltage to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorZoom

        public void setDetectorZoom​(Double zoom,
                                    int instrumentIndex,
                                    int detectorIndex)
        Description copied from interface: MetadataStore
        Set the Zoom property of Detector.
        Specified by:
        setDetectorZoom in interface MetadataStore
        Parameters:
        zoom - Zoom to set.
        instrumentIndex - the Instrument index.
        detectorIndex - the Detector index.
      • setDetectorSettingsBinning

        public void setDetectorSettingsBinning​(Binning binning,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the Binning property of DetectorSettings.
        Specified by:
        setDetectorSettingsBinning in interface MetadataStore
        Parameters:
        binning - Binning to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsGain

        public void setDetectorSettingsGain​(Double gain,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Gain property of DetectorSettings.
        Specified by:
        setDetectorSettingsGain in interface MetadataStore
        Parameters:
        gain - Gain to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsID

        public void setDetectorSettingsID​(String id,
                                          int imageIndex,
                                          int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of DetectorSettings.
        Specified by:
        setDetectorSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsIntegration

        public void setDetectorSettingsIntegration​(PositiveInteger integration,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the Integration property of DetectorSettings.
        Specified by:
        setDetectorSettingsIntegration in interface MetadataStore
        Parameters:
        integration - Integration to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsOffset

        public void setDetectorSettingsOffset​(Double offset,
                                              int imageIndex,
                                              int channelIndex)
        Description copied from interface: MetadataStore
        Set the Offset property of DetectorSettings.
        Specified by:
        setDetectorSettingsOffset in interface MetadataStore
        Parameters:
        offset - Offset to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsReadOutRate

        public void setDetectorSettingsReadOutRate​(Frequency readOutRate,
                                                   int imageIndex,
                                                   int channelIndex)
        Description copied from interface: MetadataStore
        Set the ReadOutRate property of DetectorSettings.
        Specified by:
        setDetectorSettingsReadOutRate in interface MetadataStore
        Parameters:
        readOutRate - ReadOutRate to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsVoltage

        public void setDetectorSettingsVoltage​(ElectricPotential voltage,
                                               int imageIndex,
                                               int channelIndex)
        Description copied from interface: MetadataStore
        Set the Voltage property of DetectorSettings.
        Specified by:
        setDetectorSettingsVoltage in interface MetadataStore
        Parameters:
        voltage - Voltage to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDetectorSettingsZoom

        public void setDetectorSettingsZoom​(Double zoom,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Zoom property of DetectorSettings.
        Specified by:
        setDetectorSettingsZoom in interface MetadataStore
        Parameters:
        zoom - Zoom to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setDichroicAnnotationRef

        public void setDichroicAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int dichroicIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Dichroic.
        Specified by:
        setDichroicAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDichroicID

        public void setDichroicID​(String id,
                                  int instrumentIndex,
                                  int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Dichroic.
        Specified by:
        setDichroicID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicLotNumber

        public void setDichroicLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Dichroic.
        Specified by:
        setDichroicLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicManufacturer

        public void setDichroicManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Dichroic.
        Specified by:
        setDichroicManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicModel

        public void setDichroicModel​(String model,
                                     int instrumentIndex,
                                     int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Dichroic.
        Specified by:
        setDichroicModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDichroicSerialNumber

        public void setDichroicSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int dichroicIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Dichroic.
        Specified by:
        setDichroicSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        dichroicIndex - the Dichroic index.
      • setDoubleAnnotationAnnotationRef

        public void setDoubleAnnotationAnnotationRef​(String annotation,
                                                     int doubleAnnotationIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setDoubleAnnotationAnnotator

        public void setDoubleAnnotationAnnotator​(String annotator,
                                                 int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationDescription

        public void setDoubleAnnotationDescription​(String description,
                                                   int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationID

        public void setDoubleAnnotationID​(String id,
                                          int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationNamespace

        public void setDoubleAnnotationNamespace​(String namespace,
                                                 int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setDoubleAnnotationValue

        public void setDoubleAnnotationValue​(Double value,
                                             int doubleAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of DoubleAnnotation.
        Specified by:
        setDoubleAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        doubleAnnotationIndex - the DoubleAnnotation index.
      • setEllipseAnnotationRef

        public void setEllipseAnnotationRef​(String annotation,
                                            int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Ellipse.
        Specified by:
        setEllipseAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setEllipseFillColor

        public void setEllipseFillColor​(Color fillColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Ellipse.
        Specified by:
        setEllipseFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFillRule

        public void setEllipseFillRule​(FillRule fillRule,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Ellipse.
        Specified by:
        setEllipseFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontFamily

        public void setEllipseFontFamily​(FontFamily fontFamily,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Ellipse.
        Specified by:
        setEllipseFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontSize

        public void setEllipseFontSize​(Length fontSize,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Ellipse.
        Specified by:
        setEllipseFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseFontStyle

        public void setEllipseFontStyle​(FontStyle fontStyle,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Ellipse.
        Specified by:
        setEllipseFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseID

        public void setEllipseID​(String id,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Ellipse.
        Specified by:
        setEllipseID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseLocked

        public void setEllipseLocked​(Boolean locked,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Ellipse.
        Specified by:
        setEllipseLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseRadiusX

        public void setEllipseRadiusX​(Double radiusX,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the RadiusX property of Ellipse.
        Specified by:
        setEllipseRadiusX in interface MetadataStore
        Parameters:
        radiusX - RadiusX to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseRadiusY

        public void setEllipseRadiusY​(Double radiusY,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the RadiusY property of Ellipse.
        Specified by:
        setEllipseRadiusY in interface MetadataStore
        Parameters:
        radiusY - RadiusY to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeColor

        public void setEllipseStrokeColor​(Color strokeColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Ellipse.
        Specified by:
        setEllipseStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeDashArray

        public void setEllipseStrokeDashArray​(String strokeDashArray,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Ellipse.
        Specified by:
        setEllipseStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseStrokeWidth

        public void setEllipseStrokeWidth​(Length strokeWidth,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Ellipse.
        Specified by:
        setEllipseStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseText

        public void setEllipseText​(String text,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Ellipse.
        Specified by:
        setEllipseText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheC

        public void setEllipseTheC​(NonNegativeInteger theC,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Ellipse.
        Specified by:
        setEllipseTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheT

        public void setEllipseTheT​(NonNegativeInteger theT,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Ellipse.
        Specified by:
        setEllipseTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTheZ

        public void setEllipseTheZ​(NonNegativeInteger theZ,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Ellipse.
        Specified by:
        setEllipseTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseTransform

        public void setEllipseTransform​(AffineTransform transform,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Ellipse.
        Specified by:
        setEllipseTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseX

        public void setEllipseX​(Double x,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Ellipse.
        Specified by:
        setEllipseX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setEllipseY

        public void setEllipseY​(Double y,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Ellipse.
        Specified by:
        setEllipseY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setExperimentDescription

        public void setExperimentDescription​(String description,
                                             int experimentIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Experiment.
        Specified by:
        setExperimentDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimentIndex - the Experiment index.
      • setExperimentExperimenterRef

        public void setExperimentExperimenterRef​(String experimenter,
                                                 int experimentIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Experiment.
        Specified by:
        setExperimentExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimentIndex - the Experiment index.
      • setExperimentID

        public void setExperimentID​(String id,
                                    int experimentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Experiment.
        Specified by:
        setExperimentID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
      • setExperimentType

        public void setExperimentType​(ExperimentType type,
                                      int experimentIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Experiment.
        Specified by:
        setExperimentType in interface MetadataStore
        Parameters:
        type - Type to set.
        experimentIndex - the Experiment index.
      • setExperimenterAnnotationRef

        public void setExperimenterAnnotationRef​(String annotation,
                                                 int experimenterIndex,
                                                 int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Experimenter.
        Specified by:
        setExperimenterAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        experimenterIndex - the Experimenter index.
        annotationRefIndex - AnnotationRef index (unused).
      • setExperimenterEmail

        public void setExperimenterEmail​(String email,
                                         int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the Email property of Experimenter.
        Specified by:
        setExperimenterEmail in interface MetadataStore
        Parameters:
        email - Email to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterFirstName

        public void setExperimenterFirstName​(String firstName,
                                             int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the FirstName property of Experimenter.
        Specified by:
        setExperimenterFirstName in interface MetadataStore
        Parameters:
        firstName - FirstName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterID

        public void setExperimenterID​(String id,
                                      int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Experimenter.
        Specified by:
        setExperimenterID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterInstitution

        public void setExperimenterInstitution​(String institution,
                                               int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the Institution property of Experimenter.
        Specified by:
        setExperimenterInstitution in interface MetadataStore
        Parameters:
        institution - Institution to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterLastName

        public void setExperimenterLastName​(String lastName,
                                            int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the LastName property of Experimenter.
        Specified by:
        setExperimenterLastName in interface MetadataStore
        Parameters:
        lastName - LastName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterMiddleName

        public void setExperimenterMiddleName​(String middleName,
                                              int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the MiddleName property of Experimenter.
        Specified by:
        setExperimenterMiddleName in interface MetadataStore
        Parameters:
        middleName - MiddleName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterUserName

        public void setExperimenterUserName​(String userName,
                                            int experimenterIndex)
        Description copied from interface: MetadataStore
        Set the UserName property of Experimenter.
        Specified by:
        setExperimenterUserName in interface MetadataStore
        Parameters:
        userName - UserName to set.
        experimenterIndex - the Experimenter index.
      • setExperimenterGroupAnnotationRef

        public void setExperimenterGroupAnnotationRef​(String annotation,
                                                      int experimenterGroupIndex,
                                                      int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        annotationRefIndex - AnnotationRef index (unused).
      • setExperimenterGroupDescription

        public void setExperimenterGroupDescription​(String description,
                                                    int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setExperimenterGroupExperimenterRef

        public void setExperimenterGroupExperimenterRef​(String experimenter,
                                                        int experimenterGroupIndex,
                                                        int experimenterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        experimenterRefIndex - ExperimenterRef index (unused).
      • setExperimenterGroupID

        public void setExperimenterGroupID​(String id,
                                           int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setExperimenterGroupLeader

        public void setExperimenterGroupLeader​(String leader,
                                               int experimenterGroupIndex,
                                               int leaderIndex)
        Description copied from interface: MetadataStore
        Set the Leader property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupLeader in interface MetadataStore
        Parameters:
        leader - Leader to set.
        experimenterGroupIndex - the ExperimenterGroup index.
        leaderIndex - Leader index (unused).
      • setExperimenterGroupName

        public void setExperimenterGroupName​(String name,
                                             int experimenterGroupIndex)
        Description copied from interface: MetadataStore
        Set the Name property of ExperimenterGroup.
        Specified by:
        setExperimenterGroupName in interface MetadataStore
        Parameters:
        name - Name to set.
        experimenterGroupIndex - the ExperimenterGroup index.
      • setFilamentAnnotationRef

        public void setFilamentAnnotationRef​(String annotation,
                                             int instrumentIndex,
                                             int lightSourceIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Filament.
        Specified by:
        setFilamentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFilamentID

        public void setFilamentID​(String id,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Filament.
        Specified by:
        setFilamentID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentLotNumber

        public void setFilamentLotNumber​(String lotNumber,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Filament.
        Specified by:
        setFilamentLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentManufacturer

        public void setFilamentManufacturer​(String manufacturer,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Filament.
        Specified by:
        setFilamentManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentModel

        public void setFilamentModel​(String model,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Filament.
        Specified by:
        setFilamentModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentPower

        public void setFilamentPower​(Power power,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Filament.
        Specified by:
        setFilamentPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentSerialNumber

        public void setFilamentSerialNumber​(String serialNumber,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Filament.
        Specified by:
        setFilamentSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFilamentType

        public void setFilamentType​(FilamentType type,
                                    int instrumentIndex,
                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Filament.
        Specified by:
        setFilamentType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setFileAnnotationAnnotationRef

        public void setFileAnnotationAnnotationRef​(String annotation,
                                                   int fileAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of FileAnnotation.
        Specified by:
        setFileAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        fileAnnotationIndex - the FileAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFileAnnotationAnnotator

        public void setFileAnnotationAnnotator​(String annotator,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of FileAnnotation.
        Specified by:
        setFileAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationDescription

        public void setFileAnnotationDescription​(String description,
                                                 int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of FileAnnotation.
        Specified by:
        setFileAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationID

        public void setFileAnnotationID​(String id,
                                        int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of FileAnnotation.
        Specified by:
        setFileAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFileAnnotationNamespace

        public void setFileAnnotationNamespace​(String namespace,
                                               int fileAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of FileAnnotation.
        Specified by:
        setFileAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        fileAnnotationIndex - the FileAnnotation index.
      • setFilterAnnotationRef

        public void setFilterAnnotationRef​(String annotation,
                                           int instrumentIndex,
                                           int filterIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Filter.
        Specified by:
        setFilterAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFilterFilterWheel

        public void setFilterFilterWheel​(String filterWheel,
                                         int instrumentIndex,
                                         int filterIndex)
        Description copied from interface: MetadataStore
        Set the FilterWheel property of Filter.
        Specified by:
        setFilterFilterWheel in interface MetadataStore
        Parameters:
        filterWheel - FilterWheel to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterID

        public void setFilterID​(String id,
                                int instrumentIndex,
                                int filterIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Filter.
        Specified by:
        setFilterID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterLotNumber

        public void setFilterLotNumber​(String lotNumber,
                                       int instrumentIndex,
                                       int filterIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Filter.
        Specified by:
        setFilterLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterManufacturer

        public void setFilterManufacturer​(String manufacturer,
                                          int instrumentIndex,
                                          int filterIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Filter.
        Specified by:
        setFilterManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterModel

        public void setFilterModel​(String model,
                                   int instrumentIndex,
                                   int filterIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Filter.
        Specified by:
        setFilterModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterSerialNumber

        public void setFilterSerialNumber​(String serialNumber,
                                          int instrumentIndex,
                                          int filterIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Filter.
        Specified by:
        setFilterSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterType

        public void setFilterType​(FilterType type,
                                  int instrumentIndex,
                                  int filterIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Filter.
        Specified by:
        setFilterType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setFilterSetDichroicRef

        public void setFilterSetDichroicRef​(String dichroic,
                                            int instrumentIndex,
                                            int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the DichroicRef property of FilterSet.
        Specified by:
        setFilterSetDichroicRef in interface MetadataStore
        Parameters:
        dichroic - DichroicRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetEmissionFilterRef

        public void setFilterSetEmissionFilterRef​(String emissionFilter,
                                                  int instrumentIndex,
                                                  int filterSetIndex,
                                                  int emissionFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the EmissionFilterRef property of FilterSet.
        Specified by:
        setFilterSetEmissionFilterRef in interface MetadataStore
        Parameters:
        emissionFilter - EmissionFilterRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        emissionFilterRefIndex - EmissionFilterRef index (unused).
      • setFilterSetExcitationFilterRef

        public void setFilterSetExcitationFilterRef​(String excitationFilter,
                                                    int instrumentIndex,
                                                    int filterSetIndex,
                                                    int excitationFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationFilterRef property of FilterSet.
        Specified by:
        setFilterSetExcitationFilterRef in interface MetadataStore
        Parameters:
        excitationFilter - ExcitationFilterRef to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
        excitationFilterRefIndex - ExcitationFilterRef index (unused).
      • setFilterSetID

        public void setFilterSetID​(String id,
                                   int instrumentIndex,
                                   int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the ID property of FilterSet.
        Specified by:
        setFilterSetID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetLotNumber

        public void setFilterSetLotNumber​(String lotNumber,
                                          int instrumentIndex,
                                          int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of FilterSet.
        Specified by:
        setFilterSetLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetManufacturer

        public void setFilterSetManufacturer​(String manufacturer,
                                             int instrumentIndex,
                                             int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of FilterSet.
        Specified by:
        setFilterSetManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetModel

        public void setFilterSetModel​(String model,
                                      int instrumentIndex,
                                      int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the Model property of FilterSet.
        Specified by:
        setFilterSetModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFilterSetSerialNumber

        public void setFilterSetSerialNumber​(String serialNumber,
                                             int instrumentIndex,
                                             int filterSetIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of FilterSet.
        Specified by:
        setFilterSetSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        filterSetIndex - the FilterSet index.
      • setFolderAnnotationRef

        public void setFolderAnnotationRef​(String annotation,
                                           int folderIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Folder.
        Specified by:
        setFolderAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        folderIndex - the Folder index.
        annotationRefIndex - AnnotationRef index (unused).
      • setFolderDescription

        public void setFolderDescription​(String description,
                                         int folderIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Folder.
        Specified by:
        setFolderDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        folderIndex - the Folder index.
      • setFolderFolderRef

        public void setFolderFolderRef​(String folder,
                                       int folderIndex,
                                       int folderRefIndex)
        Description copied from interface: MetadataStore
        Set the FolderRef property of Folder.
        Specified by:
        setFolderFolderRef in interface MetadataStore
        Parameters:
        folder - FolderRef to set.
        folderIndex - the Folder index.
        folderRefIndex - FolderRef index (unused).
      • setFolderID

        public void setFolderID​(String id,
                                int folderIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Folder.
        Specified by:
        setFolderID in interface MetadataStore
        Parameters:
        id - ID to set.
        folderIndex - the Folder index.
      • setFolderImageRef

        public void setFolderImageRef​(String image,
                                      int folderIndex,
                                      int imageRefIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of Folder.
        Specified by:
        setFolderImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        folderIndex - the Folder index.
        imageRefIndex - ImageRef index (unused).
      • setFolderName

        public void setFolderName​(String name,
                                  int folderIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Folder.
        Specified by:
        setFolderName in interface MetadataStore
        Parameters:
        name - Name to set.
        folderIndex - the Folder index.
      • setFolderROIRef

        public void setFolderROIRef​(String roi,
                                    int folderIndex,
                                    int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of Folder.
        Specified by:
        setFolderROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        folderIndex - the Folder index.
        ROIRefIndex - ROIRef index (unused).
      • setGenericExcitationSourceAnnotationRef

        public void setGenericExcitationSourceAnnotationRef​(String annotation,
                                                            int instrumentIndex,
                                                            int lightSourceIndex,
                                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setGenericExcitationSourceID

        public void setGenericExcitationSourceID​(String id,
                                                 int instrumentIndex,
                                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceLotNumber

        public void setGenericExcitationSourceLotNumber​(String lotNumber,
                                                        int instrumentIndex,
                                                        int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceManufacturer

        public void setGenericExcitationSourceManufacturer​(String manufacturer,
                                                           int instrumentIndex,
                                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceModel

        public void setGenericExcitationSourceModel​(String model,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourcePower

        public void setGenericExcitationSourcePower​(Power power,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourcePower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setGenericExcitationSourceSerialNumber

        public void setGenericExcitationSourceSerialNumber​(String serialNumber,
                                                           int instrumentIndex,
                                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of GenericExcitationSource.
        Specified by:
        setGenericExcitationSourceSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setImageAcquisitionDate

        public void setImageAcquisitionDate​(Timestamp acquisitionDate,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the AcquisitionDate property of Image.
        Specified by:
        setImageAcquisitionDate in interface MetadataStore
        Parameters:
        acquisitionDate - AcquisitionDate to set.
        imageIndex - the Image index.
      • setImageAnnotationRef

        public void setImageAnnotationRef​(String annotation,
                                          int imageIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Image.
        Specified by:
        setImageAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        annotationRefIndex - AnnotationRef index (unused).
      • setImageDescription

        public void setImageDescription​(String description,
                                        int imageIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Image.
        Specified by:
        setImageDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        imageIndex - the Image index.
      • setImageExperimentRef

        public void setImageExperimentRef​(String experiment,
                                          int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimentRef property of Image.
        Specified by:
        setImageExperimentRef in interface MetadataStore
        Parameters:
        experiment - ExperimentRef to set.
        imageIndex - the Image index.
      • setImageExperimenterGroupRef

        public void setImageExperimenterGroupRef​(String experimenterGroup,
                                                 int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Image.
        Specified by:
        setImageExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        imageIndex - the Image index.
      • setImageExperimenterRef

        public void setImageExperimenterRef​(String experimenter,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Image.
        Specified by:
        setImageExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        imageIndex - the Image index.
      • setImageID

        public void setImageID​(String id,
                               int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Image.
        Specified by:
        setImageID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setImageInstrumentRef

        public void setImageInstrumentRef​(String instrument,
                                          int imageIndex)
        Description copied from interface: MetadataStore
        Set the InstrumentRef property of Image.
        Specified by:
        setImageInstrumentRef in interface MetadataStore
        Parameters:
        instrument - InstrumentRef to set.
        imageIndex - the Image index.
      • setImageMicrobeamManipulationRef

        public void setImageMicrobeamManipulationRef​(String microbeamManipulation,
                                                     int imageIndex,
                                                     int microbeamManipulationRefIndex)
        Description copied from interface: MetadataStore
        Set the MicrobeamManipulationRef property of Image.
        Specified by:
        setImageMicrobeamManipulationRef in interface MetadataStore
        Parameters:
        microbeamManipulation - MicrobeamManipulationRef to set.
        imageIndex - the Image index.
        microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).
      • setImageName

        public void setImageName​(String name,
                                 int imageIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Image.
        Specified by:
        setImageName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
      • setImageROIRef

        public void setImageROIRef​(String roi,
                                   int imageIndex,
                                   int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of Image.
        Specified by:
        setImageROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        imageIndex - the Image index.
        ROIRefIndex - ROIRef index (unused).
      • setImagingEnvironmentAirPressure

        public void setImagingEnvironmentAirPressure​(Pressure airPressure,
                                                     int imageIndex)
        Description copied from interface: MetadataStore
        Set the AirPressure property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentAirPressure in interface MetadataStore
        Parameters:
        airPressure - AirPressure to set.
        imageIndex - the Image index.
      • setImagingEnvironmentCO2Percent

        public void setImagingEnvironmentCO2Percent​(PercentFraction co2Percent,
                                                    int imageIndex)
        Description copied from interface: MetadataStore
        Set the CO2Percent property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentCO2Percent in interface MetadataStore
        Parameters:
        co2Percent - CO2Percent to set.
        imageIndex - the Image index.
      • setImagingEnvironmentHumidity

        public void setImagingEnvironmentHumidity​(PercentFraction humidity,
                                                  int imageIndex)
        Description copied from interface: MetadataStore
        Set the Humidity property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentHumidity in interface MetadataStore
        Parameters:
        humidity - Humidity to set.
        imageIndex - the Image index.
      • setImagingEnvironmentTemperature

        public void setImagingEnvironmentTemperature​(Temperature temperature,
                                                     int imageIndex)
        Description copied from interface: MetadataStore
        Set the Temperature property of ImagingEnvironment.
        Specified by:
        setImagingEnvironmentTemperature in interface MetadataStore
        Parameters:
        temperature - Temperature to set.
        imageIndex - the Image index.
      • setInstrumentAnnotationRef

        public void setInstrumentAnnotationRef​(String annotation,
                                               int instrumentIndex,
                                               int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Instrument.
        Specified by:
        setInstrumentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        annotationRefIndex - AnnotationRef index (unused).
      • setInstrumentID

        public void setInstrumentID​(String id,
                                    int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Instrument.
        Specified by:
        setInstrumentID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
      • setLabelAnnotationRef

        public void setLabelAnnotationRef​(String annotation,
                                          int ROIIndex,
                                          int shapeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Label.
        Specified by:
        setLabelAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLabelFillColor

        public void setLabelFillColor​(Color fillColor,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Label.
        Specified by:
        setLabelFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFillRule

        public void setLabelFillRule​(FillRule fillRule,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Label.
        Specified by:
        setLabelFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontFamily

        public void setLabelFontFamily​(FontFamily fontFamily,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Label.
        Specified by:
        setLabelFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontSize

        public void setLabelFontSize​(Length fontSize,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Label.
        Specified by:
        setLabelFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelFontStyle

        public void setLabelFontStyle​(FontStyle fontStyle,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Label.
        Specified by:
        setLabelFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelID

        public void setLabelID​(String id,
                               int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Label.
        Specified by:
        setLabelID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelLocked

        public void setLabelLocked​(Boolean locked,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Label.
        Specified by:
        setLabelLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeColor

        public void setLabelStrokeColor​(Color strokeColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Label.
        Specified by:
        setLabelStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeDashArray

        public void setLabelStrokeDashArray​(String strokeDashArray,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Label.
        Specified by:
        setLabelStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelStrokeWidth

        public void setLabelStrokeWidth​(Length strokeWidth,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Label.
        Specified by:
        setLabelStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelText

        public void setLabelText​(String text,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Label.
        Specified by:
        setLabelText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheC

        public void setLabelTheC​(NonNegativeInteger theC,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Label.
        Specified by:
        setLabelTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheT

        public void setLabelTheT​(NonNegativeInteger theT,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Label.
        Specified by:
        setLabelTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTheZ

        public void setLabelTheZ​(NonNegativeInteger theZ,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Label.
        Specified by:
        setLabelTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelTransform

        public void setLabelTransform​(AffineTransform transform,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Label.
        Specified by:
        setLabelTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelX

        public void setLabelX​(Double x,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Label.
        Specified by:
        setLabelX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLabelY

        public void setLabelY​(Double y,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Label.
        Specified by:
        setLabelY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLaserAnnotationRef

        public void setLaserAnnotationRef​(String annotation,
                                          int instrumentIndex,
                                          int lightSourceIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Laser.
        Specified by:
        setLaserAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLaserFrequencyMultiplication

        public void setLaserFrequencyMultiplication​(PositiveInteger frequencyMultiplication,
                                                    int instrumentIndex,
                                                    int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the FrequencyMultiplication property of Laser.
        Specified by:
        setLaserFrequencyMultiplication in interface MetadataStore
        Parameters:
        frequencyMultiplication - FrequencyMultiplication to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserID

        public void setLaserID​(String id,
                               int instrumentIndex,
                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Laser.
        Specified by:
        setLaserID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserLaserMedium

        public void setLaserLaserMedium​(LaserMedium laserMedium,
                                        int instrumentIndex,
                                        int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LaserMedium property of Laser.
        Specified by:
        setLaserLaserMedium in interface MetadataStore
        Parameters:
        laserMedium - LaserMedium to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserLotNumber

        public void setLaserLotNumber​(String lotNumber,
                                      int instrumentIndex,
                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Laser.
        Specified by:
        setLaserLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserManufacturer

        public void setLaserManufacturer​(String manufacturer,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Laser.
        Specified by:
        setLaserManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserModel

        public void setLaserModel​(String model,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Laser.
        Specified by:
        setLaserModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPockelCell

        public void setLaserPockelCell​(Boolean pockelCell,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the PockelCell property of Laser.
        Specified by:
        setLaserPockelCell in interface MetadataStore
        Parameters:
        pockelCell - PockelCell to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPower

        public void setLaserPower​(Power power,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of Laser.
        Specified by:
        setLaserPower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPulse

        public void setLaserPulse​(Pulse pulse,
                                  int instrumentIndex,
                                  int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Pulse property of Laser.
        Specified by:
        setLaserPulse in interface MetadataStore
        Parameters:
        pulse - Pulse to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserPump

        public void setLaserPump​(String pump,
                                 int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Pump property of Laser.
        Specified by:
        setLaserPump in interface MetadataStore
        Parameters:
        pump - Pump to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserRepetitionRate

        public void setLaserRepetitionRate​(Frequency repetitionRate,
                                           int instrumentIndex,
                                           int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the RepetitionRate property of Laser.
        Specified by:
        setLaserRepetitionRate in interface MetadataStore
        Parameters:
        repetitionRate - RepetitionRate to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserSerialNumber

        public void setLaserSerialNumber​(String serialNumber,
                                         int instrumentIndex,
                                         int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Laser.
        Specified by:
        setLaserSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserTuneable

        public void setLaserTuneable​(Boolean tuneable,
                                     int instrumentIndex,
                                     int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Tuneable property of Laser.
        Specified by:
        setLaserTuneable in interface MetadataStore
        Parameters:
        tuneable - Tuneable to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserType

        public void setLaserType​(LaserType type,
                                 int instrumentIndex,
                                 int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Laser.
        Specified by:
        setLaserType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLaserWavelength

        public void setLaserWavelength​(Length wavelength,
                                       int instrumentIndex,
                                       int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of Laser.
        Specified by:
        setLaserWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeAnnotationRef

        public void setLightEmittingDiodeAnnotationRef​(String annotation,
                                                       int instrumentIndex,
                                                       int lightSourceIndex,
                                                       int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLightEmittingDiodeID

        public void setLightEmittingDiodeID​(String id,
                                            int instrumentIndex,
                                            int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeLotNumber

        public void setLightEmittingDiodeLotNumber​(String lotNumber,
                                                   int instrumentIndex,
                                                   int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeManufacturer

        public void setLightEmittingDiodeManufacturer​(String manufacturer,
                                                      int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeModel

        public void setLightEmittingDiodeModel​(String model,
                                               int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Model property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodePower

        public void setLightEmittingDiodePower​(Power power,
                                               int instrumentIndex,
                                               int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the Power property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodePower in interface MetadataStore
        Parameters:
        power - Power to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightEmittingDiodeSerialNumber

        public void setLightEmittingDiodeSerialNumber​(String serialNumber,
                                                      int instrumentIndex,
                                                      int lightSourceIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of LightEmittingDiode.
        Specified by:
        setLightEmittingDiodeSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        lightSourceIndex - the LightSource index.
      • setLightPathAnnotationRef

        public void setLightPathAnnotationRef​(String annotation,
                                              int imageIndex,
                                              int channelIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LightPath.
        Specified by:
        setLightPathAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLightPathDichroicRef

        public void setLightPathDichroicRef​(String dichroic,
                                            int imageIndex,
                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the DichroicRef property of LightPath.
        Specified by:
        setLightPathDichroicRef in interface MetadataStore
        Parameters:
        dichroic - DichroicRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setLightPathEmissionFilterRef

        public void setLightPathEmissionFilterRef​(String emissionFilter,
                                                  int imageIndex,
                                                  int channelIndex,
                                                  int emissionFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the EmissionFilterRef property of LightPath.
        Specified by:
        setLightPathEmissionFilterRef in interface MetadataStore
        Parameters:
        emissionFilter - EmissionFilterRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        emissionFilterRefIndex - EmissionFilterRef index (unused).
      • setLightPathExcitationFilterRef

        public void setLightPathExcitationFilterRef​(String excitationFilter,
                                                    int imageIndex,
                                                    int channelIndex,
                                                    int excitationFilterRefIndex)
        Description copied from interface: MetadataStore
        Set the ExcitationFilterRef property of LightPath.
        Specified by:
        setLightPathExcitationFilterRef in interface MetadataStore
        Parameters:
        excitationFilter - ExcitationFilterRef to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
        excitationFilterRefIndex - ExcitationFilterRef index (unused).
      • setChannelLightSourceSettingsAttenuation

        public void setChannelLightSourceSettingsAttenuation​(PercentFraction attenuation,
                                                             int imageIndex,
                                                             int channelIndex)
        Description copied from interface: MetadataStore
        Set the Attenuation property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsAttenuation in interface MetadataStore
        Parameters:
        attenuation - Attenuation to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsAttenuation

        public void setMicrobeamManipulationLightSourceSettingsAttenuation​(PercentFraction attenuation,
                                                                           int experimentIndex,
                                                                           int microbeamManipulationIndex,
                                                                           int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the Attenuation property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataStore
        Parameters:
        attenuation - Attenuation to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setChannelLightSourceSettingsID

        public void setChannelLightSourceSettingsID​(String id,
                                                    int imageIndex,
                                                    int channelIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsID

        public void setMicrobeamManipulationLightSourceSettingsID​(String id,
                                                                  int experimentIndex,
                                                                  int microbeamManipulationIndex,
                                                                  int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setChannelLightSourceSettingsWavelength

        public void setChannelLightSourceSettingsWavelength​(Length wavelength,
                                                            int imageIndex,
                                                            int channelIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of LightSourceSettings.
        Specified by:
        setChannelLightSourceSettingsWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        imageIndex - the Image index.
        channelIndex - the Channel index.
      • setMicrobeamManipulationLightSourceSettingsWavelength

        public void setMicrobeamManipulationLightSourceSettingsWavelength​(Length wavelength,
                                                                          int experimentIndex,
                                                                          int microbeamManipulationIndex,
                                                                          int lightSourceSettingsIndex)
        Description copied from interface: MetadataStore
        Set the Wavelength property of LightSourceSettings.
        Specified by:
        setMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataStore
        Parameters:
        wavelength - Wavelength to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        lightSourceSettingsIndex - the LightSourceSettings index.
      • setLineAnnotationRef

        public void setLineAnnotationRef​(String annotation,
                                         int ROIIndex,
                                         int shapeIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Line.
        Specified by:
        setLineAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLineFillColor

        public void setLineFillColor​(Color fillColor,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Line.
        Specified by:
        setLineFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFillRule

        public void setLineFillRule​(FillRule fillRule,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Line.
        Specified by:
        setLineFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontFamily

        public void setLineFontFamily​(FontFamily fontFamily,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Line.
        Specified by:
        setLineFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontSize

        public void setLineFontSize​(Length fontSize,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Line.
        Specified by:
        setLineFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineFontStyle

        public void setLineFontStyle​(FontStyle fontStyle,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Line.
        Specified by:
        setLineFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineID

        public void setLineID​(String id,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Line.
        Specified by:
        setLineID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineLocked

        public void setLineLocked​(Boolean locked,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Line.
        Specified by:
        setLineLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineMarkerEnd

        public void setLineMarkerEnd​(Marker markerEnd,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerEnd property of Line.
        Specified by:
        setLineMarkerEnd in interface MetadataStore
        Parameters:
        markerEnd - MarkerEnd to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineMarkerStart

        public void setLineMarkerStart​(Marker markerStart,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerStart property of Line.
        Specified by:
        setLineMarkerStart in interface MetadataStore
        Parameters:
        markerStart - MarkerStart to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeColor

        public void setLineStrokeColor​(Color strokeColor,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Line.
        Specified by:
        setLineStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeDashArray

        public void setLineStrokeDashArray​(String strokeDashArray,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Line.
        Specified by:
        setLineStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineStrokeWidth

        public void setLineStrokeWidth​(Length strokeWidth,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Line.
        Specified by:
        setLineStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineText

        public void setLineText​(String text,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Line.
        Specified by:
        setLineText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheC

        public void setLineTheC​(NonNegativeInteger theC,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Line.
        Specified by:
        setLineTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheT

        public void setLineTheT​(NonNegativeInteger theT,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Line.
        Specified by:
        setLineTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTheZ

        public void setLineTheZ​(NonNegativeInteger theZ,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Line.
        Specified by:
        setLineTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineTransform

        public void setLineTransform​(AffineTransform transform,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Line.
        Specified by:
        setLineTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineX1

        public void setLineX1​(Double x1,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X1 property of Line.
        Specified by:
        setLineX1 in interface MetadataStore
        Parameters:
        x1 - X1 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineX2

        public void setLineX2​(Double x2,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X2 property of Line.
        Specified by:
        setLineX2 in interface MetadataStore
        Parameters:
        x2 - X2 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineY1

        public void setLineY1​(Double y1,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y1 property of Line.
        Specified by:
        setLineY1 in interface MetadataStore
        Parameters:
        y1 - Y1 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setLineY2

        public void setLineY2​(Double y2,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y2 property of Line.
        Specified by:
        setLineY2 in interface MetadataStore
        Parameters:
        y2 - Y2 to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setListAnnotationAnnotationRef

        public void setListAnnotationAnnotationRef​(String annotation,
                                                   int listAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ListAnnotation.
        Specified by:
        setListAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        listAnnotationIndex - the ListAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setListAnnotationAnnotator

        public void setListAnnotationAnnotator​(String annotator,
                                               int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of ListAnnotation.
        Specified by:
        setListAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationDescription

        public void setListAnnotationDescription​(String description,
                                                 int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ListAnnotation.
        Specified by:
        setListAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationID

        public void setListAnnotationID​(String id,
                                        int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ListAnnotation.
        Specified by:
        setListAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        listAnnotationIndex - the ListAnnotation index.
      • setListAnnotationNamespace

        public void setListAnnotationNamespace​(String namespace,
                                               int listAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of ListAnnotation.
        Specified by:
        setListAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        listAnnotationIndex - the ListAnnotation index.
      • setLongAnnotationAnnotationRef

        public void setLongAnnotationAnnotationRef​(String annotation,
                                                   int longAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of LongAnnotation.
        Specified by:
        setLongAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        longAnnotationIndex - the LongAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setLongAnnotationAnnotator

        public void setLongAnnotationAnnotator​(String annotator,
                                               int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of LongAnnotation.
        Specified by:
        setLongAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationDescription

        public void setLongAnnotationDescription​(String description,
                                                 int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of LongAnnotation.
        Specified by:
        setLongAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationID

        public void setLongAnnotationID​(String id,
                                        int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of LongAnnotation.
        Specified by:
        setLongAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationNamespace

        public void setLongAnnotationNamespace​(String namespace,
                                               int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of LongAnnotation.
        Specified by:
        setLongAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        longAnnotationIndex - the LongAnnotation index.
      • setLongAnnotationValue

        public void setLongAnnotationValue​(Long value,
                                           int longAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of LongAnnotation.
        Specified by:
        setLongAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        longAnnotationIndex - the LongAnnotation index.
      • setMapAnnotationAnnotationRef

        public void setMapAnnotationAnnotationRef​(String annotation,
                                                  int mapAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of MapAnnotation.
        Specified by:
        setMapAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        mapAnnotationIndex - the MapAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setMapAnnotationAnnotator

        public void setMapAnnotationAnnotator​(String annotator,
                                              int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of MapAnnotation.
        Specified by:
        setMapAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationDescription

        public void setMapAnnotationDescription​(String description,
                                                int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of MapAnnotation.
        Specified by:
        setMapAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationID

        public void setMapAnnotationID​(String id,
                                       int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of MapAnnotation.
        Specified by:
        setMapAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMapAnnotationNamespace

        public void setMapAnnotationNamespace​(String namespace,
                                              int mapAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of MapAnnotation.
        Specified by:
        setMapAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        mapAnnotationIndex - the MapAnnotation index.
      • setMaskAnnotationRef

        public void setMaskAnnotationRef​(String annotation,
                                         int ROIIndex,
                                         int shapeIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Mask.
        Specified by:
        setMaskAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setMaskFillColor

        public void setMaskFillColor​(Color fillColor,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Mask.
        Specified by:
        setMaskFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFillRule

        public void setMaskFillRule​(FillRule fillRule,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Mask.
        Specified by:
        setMaskFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontFamily

        public void setMaskFontFamily​(FontFamily fontFamily,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Mask.
        Specified by:
        setMaskFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontSize

        public void setMaskFontSize​(Length fontSize,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Mask.
        Specified by:
        setMaskFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskFontStyle

        public void setMaskFontStyle​(FontStyle fontStyle,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Mask.
        Specified by:
        setMaskFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskHeight

        public void setMaskHeight​(Double height,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Height property of Mask.
        Specified by:
        setMaskHeight in interface MetadataStore
        Parameters:
        height - Height to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskID

        public void setMaskID​(String id,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Mask.
        Specified by:
        setMaskID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskLocked

        public void setMaskLocked​(Boolean locked,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Mask.
        Specified by:
        setMaskLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeColor

        public void setMaskStrokeColor​(Color strokeColor,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Mask.
        Specified by:
        setMaskStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeDashArray

        public void setMaskStrokeDashArray​(String strokeDashArray,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Mask.
        Specified by:
        setMaskStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskStrokeWidth

        public void setMaskStrokeWidth​(Length strokeWidth,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Mask.
        Specified by:
        setMaskStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskText

        public void setMaskText​(String text,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Mask.
        Specified by:
        setMaskText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheC

        public void setMaskTheC​(NonNegativeInteger theC,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Mask.
        Specified by:
        setMaskTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheT

        public void setMaskTheT​(NonNegativeInteger theT,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Mask.
        Specified by:
        setMaskTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTheZ

        public void setMaskTheZ​(NonNegativeInteger theZ,
                                int ROIIndex,
                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Mask.
        Specified by:
        setMaskTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskTransform

        public void setMaskTransform​(AffineTransform transform,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Mask.
        Specified by:
        setMaskTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskWidth

        public void setMaskWidth​(Double width,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Width property of Mask.
        Specified by:
        setMaskWidth in interface MetadataStore
        Parameters:
        width - Width to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskX

        public void setMaskX​(Double x,
                             int ROIIndex,
                             int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Mask.
        Specified by:
        setMaskX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMaskY

        public void setMaskY​(Double y,
                             int ROIIndex,
                             int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Mask.
        Specified by:
        setMaskY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setMicrobeamManipulationDescription

        public void setMicrobeamManipulationDescription​(String description,
                                                        int experimentIndex,
                                                        int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationExperimenterRef

        public void setMicrobeamManipulationExperimenterRef​(String experimenter,
                                                            int experimentIndex,
                                                            int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationID

        public void setMicrobeamManipulationID​(String id,
                                               int experimentIndex,
                                               int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationID in interface MetadataStore
        Parameters:
        id - ID to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicrobeamManipulationROIRef

        public void setMicrobeamManipulationROIRef​(String roi,
                                                   int experimentIndex,
                                                   int microbeamManipulationIndex,
                                                   int ROIRefIndex)
        Description copied from interface: MetadataStore
        Set the ROIRef property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationROIRef in interface MetadataStore
        Parameters:
        roi - ROIRef to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
        ROIRefIndex - ROIRef index (unused).
      • setMicrobeamManipulationType

        public void setMicrobeamManipulationType​(MicrobeamManipulationType type,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex)
        Description copied from interface: MetadataStore
        Set the Type property of MicrobeamManipulation.
        Specified by:
        setMicrobeamManipulationType in interface MetadataStore
        Parameters:
        type - Type to set.
        experimentIndex - the Experiment index.
        microbeamManipulationIndex - the MicrobeamManipulation index.
      • setMicroscopeLotNumber

        public void setMicroscopeLotNumber​(String lotNumber,
                                           int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Microscope.
        Specified by:
        setMicroscopeLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeManufacturer

        public void setMicroscopeManufacturer​(String manufacturer,
                                              int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Microscope.
        Specified by:
        setMicroscopeManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeModel

        public void setMicroscopeModel​(String model,
                                       int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Microscope.
        Specified by:
        setMicroscopeModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeSerialNumber

        public void setMicroscopeSerialNumber​(String serialNumber,
                                              int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Microscope.
        Specified by:
        setMicroscopeSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
      • setMicroscopeType

        public void setMicroscopeType​(MicroscopeType type,
                                      int instrumentIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Microscope.
        Specified by:
        setMicroscopeType in interface MetadataStore
        Parameters:
        type - Type to set.
        instrumentIndex - the Instrument index.
      • setObjectiveAnnotationRef

        public void setObjectiveAnnotationRef​(String annotation,
                                              int instrumentIndex,
                                              int objectiveIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Objective.
        Specified by:
        setObjectiveAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
        annotationRefIndex - AnnotationRef index (unused).
      • setObjectiveCalibratedMagnification

        public void setObjectiveCalibratedMagnification​(Double calibratedMagnification,
                                                        int instrumentIndex,
                                                        int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the CalibratedMagnification property of Objective.
        Specified by:
        setObjectiveCalibratedMagnification in interface MetadataStore
        Parameters:
        calibratedMagnification - CalibratedMagnification to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveCorrection

        public void setObjectiveCorrection​(Correction correction,
                                           int instrumentIndex,
                                           int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Correction property of Objective.
        Specified by:
        setObjectiveCorrection in interface MetadataStore
        Parameters:
        correction - Correction to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveID

        public void setObjectiveID​(String id,
                                   int instrumentIndex,
                                   int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Objective.
        Specified by:
        setObjectiveID in interface MetadataStore
        Parameters:
        id - ID to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveImmersion

        public void setObjectiveImmersion​(Immersion immersion,
                                          int instrumentIndex,
                                          int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Immersion property of Objective.
        Specified by:
        setObjectiveImmersion in interface MetadataStore
        Parameters:
        immersion - Immersion to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveIris

        public void setObjectiveIris​(Boolean iris,
                                     int instrumentIndex,
                                     int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Iris property of Objective.
        Specified by:
        setObjectiveIris in interface MetadataStore
        Parameters:
        iris - Iris to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveLensNA

        public void setObjectiveLensNA​(Double lensNA,
                                       int instrumentIndex,
                                       int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the LensNA property of Objective.
        Specified by:
        setObjectiveLensNA in interface MetadataStore
        Parameters:
        lensNA - LensNA to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveLotNumber

        public void setObjectiveLotNumber​(String lotNumber,
                                          int instrumentIndex,
                                          int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the LotNumber property of Objective.
        Specified by:
        setObjectiveLotNumber in interface MetadataStore
        Parameters:
        lotNumber - LotNumber to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveManufacturer

        public void setObjectiveManufacturer​(String manufacturer,
                                             int instrumentIndex,
                                             int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Manufacturer property of Objective.
        Specified by:
        setObjectiveManufacturer in interface MetadataStore
        Parameters:
        manufacturer - Manufacturer to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveModel

        public void setObjectiveModel​(String model,
                                      int instrumentIndex,
                                      int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the Model property of Objective.
        Specified by:
        setObjectiveModel in interface MetadataStore
        Parameters:
        model - Model to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveNominalMagnification

        public void setObjectiveNominalMagnification​(Double nominalMagnification,
                                                     int instrumentIndex,
                                                     int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the NominalMagnification property of Objective.
        Specified by:
        setObjectiveNominalMagnification in interface MetadataStore
        Parameters:
        nominalMagnification - NominalMagnification to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveSerialNumber

        public void setObjectiveSerialNumber​(String serialNumber,
                                             int instrumentIndex,
                                             int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the SerialNumber property of Objective.
        Specified by:
        setObjectiveSerialNumber in interface MetadataStore
        Parameters:
        serialNumber - SerialNumber to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveWorkingDistance

        public void setObjectiveWorkingDistance​(Length workingDistance,
                                                int instrumentIndex,
                                                int objectiveIndex)
        Description copied from interface: MetadataStore
        Set the WorkingDistance property of Objective.
        Specified by:
        setObjectiveWorkingDistance in interface MetadataStore
        Parameters:
        workingDistance - WorkingDistance to set.
        instrumentIndex - the Instrument index.
        objectiveIndex - the Objective index.
      • setObjectiveSettingsCorrectionCollar

        public void setObjectiveSettingsCorrectionCollar​(Double correctionCollar,
                                                         int imageIndex)
        Description copied from interface: MetadataStore
        Set the CorrectionCollar property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsCorrectionCollar in interface MetadataStore
        Parameters:
        correctionCollar - CorrectionCollar to set.
        imageIndex - the Image index.
      • setObjectiveSettingsID

        public void setObjectiveSettingsID​(String id,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setObjectiveSettingsMedium

        public void setObjectiveSettingsMedium​(Medium medium,
                                               int imageIndex)
        Description copied from interface: MetadataStore
        Set the Medium property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsMedium in interface MetadataStore
        Parameters:
        medium - Medium to set.
        imageIndex - the Image index.
      • setObjectiveSettingsRefractiveIndex

        public void setObjectiveSettingsRefractiveIndex​(Double refractiveIndex,
                                                        int imageIndex)
        Description copied from interface: MetadataStore
        Set the RefractiveIndex property of ObjectiveSettings.
        Specified by:
        setObjectiveSettingsRefractiveIndex in interface MetadataStore
        Parameters:
        refractiveIndex - RefractiveIndex to set.
        imageIndex - the Image index.
      • setPixelsBigEndian

        public void setPixelsBigEndian​(Boolean bigEndian,
                                       int imageIndex)
        Description copied from interface: MetadataStore
        Set the BigEndian property of Pixels.
        Specified by:
        setPixelsBigEndian in interface MetadataStore
        Parameters:
        bigEndian - BigEndian to set.
        imageIndex - the Image index.
      • setPixelsDimensionOrder

        public void setPixelsDimensionOrder​(DimensionOrder dimensionOrder,
                                            int imageIndex)
        Description copied from interface: MetadataStore
        Set the DimensionOrder property of Pixels.
        Specified by:
        setPixelsDimensionOrder in interface MetadataStore
        Parameters:
        dimensionOrder - DimensionOrder to set.
        imageIndex - the Image index.
      • setPixelsID

        public void setPixelsID​(String id,
                                int imageIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Pixels.
        Specified by:
        setPixelsID in interface MetadataStore
        Parameters:
        id - ID to set.
        imageIndex - the Image index.
      • setPixelsInterleaved

        public void setPixelsInterleaved​(Boolean interleaved,
                                         int imageIndex)
        Description copied from interface: MetadataStore
        Set the Interleaved property of Pixels.
        Specified by:
        setPixelsInterleaved in interface MetadataStore
        Parameters:
        interleaved - Interleaved to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeX

        public void setPixelsPhysicalSizeX​(Length physicalSizeX,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeX property of Pixels.
        Specified by:
        setPixelsPhysicalSizeX in interface MetadataStore
        Parameters:
        physicalSizeX - PhysicalSizeX to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeY

        public void setPixelsPhysicalSizeY​(Length physicalSizeY,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeY property of Pixels.
        Specified by:
        setPixelsPhysicalSizeY in interface MetadataStore
        Parameters:
        physicalSizeY - PhysicalSizeY to set.
        imageIndex - the Image index.
      • setPixelsPhysicalSizeZ

        public void setPixelsPhysicalSizeZ​(Length physicalSizeZ,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the PhysicalSizeZ property of Pixels.
        Specified by:
        setPixelsPhysicalSizeZ in interface MetadataStore
        Parameters:
        physicalSizeZ - PhysicalSizeZ to set.
        imageIndex - the Image index.
      • setPixelsSignificantBits

        public void setPixelsSignificantBits​(PositiveInteger significantBits,
                                             int imageIndex)
        Description copied from interface: MetadataStore
        Set the SignificantBits property of Pixels.
        Specified by:
        setPixelsSignificantBits in interface MetadataStore
        Parameters:
        significantBits - SignificantBits to set.
        imageIndex - the Image index.
      • setPixelsSizeC

        public void setPixelsSizeC​(PositiveInteger sizeC,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeC property of Pixels.
        Specified by:
        setPixelsSizeC in interface MetadataStore
        Parameters:
        sizeC - SizeC to set.
        imageIndex - the Image index.
      • setPixelsSizeT

        public void setPixelsSizeT​(PositiveInteger sizeT,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeT property of Pixels.
        Specified by:
        setPixelsSizeT in interface MetadataStore
        Parameters:
        sizeT - SizeT to set.
        imageIndex - the Image index.
      • setPixelsSizeX

        public void setPixelsSizeX​(PositiveInteger sizeX,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeX property of Pixels.
        Specified by:
        setPixelsSizeX in interface MetadataStore
        Parameters:
        sizeX - SizeX to set.
        imageIndex - the Image index.
      • setPixelsSizeY

        public void setPixelsSizeY​(PositiveInteger sizeY,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeY property of Pixels.
        Specified by:
        setPixelsSizeY in interface MetadataStore
        Parameters:
        sizeY - SizeY to set.
        imageIndex - the Image index.
      • setPixelsSizeZ

        public void setPixelsSizeZ​(PositiveInteger sizeZ,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the SizeZ property of Pixels.
        Specified by:
        setPixelsSizeZ in interface MetadataStore
        Parameters:
        sizeZ - SizeZ to set.
        imageIndex - the Image index.
      • setPixelsTimeIncrement

        public void setPixelsTimeIncrement​(Time timeIncrement,
                                           int imageIndex)
        Description copied from interface: MetadataStore
        Set the TimeIncrement property of Pixels.
        Specified by:
        setPixelsTimeIncrement in interface MetadataStore
        Parameters:
        timeIncrement - TimeIncrement to set.
        imageIndex - the Image index.
      • setPixelsType

        public void setPixelsType​(PixelType type,
                                  int imageIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Pixels.
        Specified by:
        setPixelsType in interface MetadataStore
        Parameters:
        type - Type to set.
        imageIndex - the Image index.
      • setPlaneAnnotationRef

        public void setPlaneAnnotationRef​(String annotation,
                                          int imageIndex,
                                          int planeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Plane.
        Specified by:
        setPlaneAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlaneDeltaT

        public void setPlaneDeltaT​(Time deltaT,
                                   int imageIndex,
                                   int planeIndex)
        Description copied from interface: MetadataStore
        Set the DeltaT property of Plane.
        Specified by:
        setPlaneDeltaT in interface MetadataStore
        Parameters:
        deltaT - DeltaT to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneExposureTime

        public void setPlaneExposureTime​(Time exposureTime,
                                         int imageIndex,
                                         int planeIndex)
        Description copied from interface: MetadataStore
        Set the ExposureTime property of Plane.
        Specified by:
        setPlaneExposureTime in interface MetadataStore
        Parameters:
        exposureTime - ExposureTime to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneHashSHA1

        public void setPlaneHashSHA1​(String hashSHA1,
                                     int imageIndex,
                                     int planeIndex)
        Description copied from interface: MetadataStore
        Set the HashSHA1 property of Plane.
        Specified by:
        setPlaneHashSHA1 in interface MetadataStore
        Parameters:
        hashSHA1 - HashSHA1 to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionX

        public void setPlanePositionX​(Length positionX,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionX property of Plane.
        Specified by:
        setPlanePositionX in interface MetadataStore
        Parameters:
        positionX - PositionX to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionY

        public void setPlanePositionY​(Length positionY,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionY property of Plane.
        Specified by:
        setPlanePositionY in interface MetadataStore
        Parameters:
        positionY - PositionY to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlanePositionZ

        public void setPlanePositionZ​(Length positionZ,
                                      int imageIndex,
                                      int planeIndex)
        Description copied from interface: MetadataStore
        Set the PositionZ property of Plane.
        Specified by:
        setPlanePositionZ in interface MetadataStore
        Parameters:
        positionZ - PositionZ to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheC

        public void setPlaneTheC​(NonNegativeInteger theC,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Plane.
        Specified by:
        setPlaneTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheT

        public void setPlaneTheT​(NonNegativeInteger theT,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Plane.
        Specified by:
        setPlaneTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlaneTheZ

        public void setPlaneTheZ​(NonNegativeInteger theZ,
                                 int imageIndex,
                                 int planeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Plane.
        Specified by:
        setPlaneTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        imageIndex - the Image index.
        planeIndex - the Plane index.
      • setPlateAnnotationRef

        public void setPlateAnnotationRef​(String annotation,
                                          int plateIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Plate.
        Specified by:
        setPlateAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlateColumnNamingConvention

        public void setPlateColumnNamingConvention​(NamingConvention columnNamingConvention,
                                                   int plateIndex)
        Description copied from interface: MetadataStore
        Set the ColumnNamingConvention property of Plate.
        Specified by:
        setPlateColumnNamingConvention in interface MetadataStore
        Parameters:
        columnNamingConvention - ColumnNamingConvention to set.
        plateIndex - the Plate index.
      • setPlateColumns

        public void setPlateColumns​(PositiveInteger columns,
                                    int plateIndex)
        Description copied from interface: MetadataStore
        Set the Columns property of Plate.
        Specified by:
        setPlateColumns in interface MetadataStore
        Parameters:
        columns - Columns to set.
        plateIndex - the Plate index.
      • setPlateDescription

        public void setPlateDescription​(String description,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Plate.
        Specified by:
        setPlateDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        plateIndex - the Plate index.
      • setPlateExternalIdentifier

        public void setPlateExternalIdentifier​(String externalIdentifier,
                                               int plateIndex)
        Description copied from interface: MetadataStore
        Set the ExternalIdentifier property of Plate.
        Specified by:
        setPlateExternalIdentifier in interface MetadataStore
        Parameters:
        externalIdentifier - ExternalIdentifier to set.
        plateIndex - the Plate index.
      • setPlateFieldIndex

        public void setPlateFieldIndex​(NonNegativeInteger fieldIndex,
                                       int plateIndex)
        Description copied from interface: MetadataStore
        Set the FieldIndex property of Plate.
        Specified by:
        setPlateFieldIndex in interface MetadataStore
        Parameters:
        fieldIndex - FieldIndex to set.
        plateIndex - the Plate index.
      • setPlateID

        public void setPlateID​(String id,
                               int plateIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Plate.
        Specified by:
        setPlateID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
      • setPlateName

        public void setPlateName​(String name,
                                 int plateIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Plate.
        Specified by:
        setPlateName in interface MetadataStore
        Parameters:
        name - Name to set.
        plateIndex - the Plate index.
      • setPlateRowNamingConvention

        public void setPlateRowNamingConvention​(NamingConvention rowNamingConvention,
                                                int plateIndex)
        Description copied from interface: MetadataStore
        Set the RowNamingConvention property of Plate.
        Specified by:
        setPlateRowNamingConvention in interface MetadataStore
        Parameters:
        rowNamingConvention - RowNamingConvention to set.
        plateIndex - the Plate index.
      • setPlateRows

        public void setPlateRows​(PositiveInteger rows,
                                 int plateIndex)
        Description copied from interface: MetadataStore
        Set the Rows property of Plate.
        Specified by:
        setPlateRows in interface MetadataStore
        Parameters:
        rows - Rows to set.
        plateIndex - the Plate index.
      • setPlateStatus

        public void setPlateStatus​(String status,
                                   int plateIndex)
        Description copied from interface: MetadataStore
        Set the Status property of Plate.
        Specified by:
        setPlateStatus in interface MetadataStore
        Parameters:
        status - Status to set.
        plateIndex - the Plate index.
      • setPlateWellOriginX

        public void setPlateWellOriginX​(Length wellOriginX,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the WellOriginX property of Plate.
        Specified by:
        setPlateWellOriginX in interface MetadataStore
        Parameters:
        wellOriginX - WellOriginX to set.
        plateIndex - the Plate index.
      • setPlateWellOriginY

        public void setPlateWellOriginY​(Length wellOriginY,
                                        int plateIndex)
        Description copied from interface: MetadataStore
        Set the WellOriginY property of Plate.
        Specified by:
        setPlateWellOriginY in interface MetadataStore
        Parameters:
        wellOriginY - WellOriginY to set.
        plateIndex - the Plate index.
      • setPlateAcquisitionAnnotationRef

        public void setPlateAcquisitionAnnotationRef​(String annotation,
                                                     int plateIndex,
                                                     int plateAcquisitionIndex,
                                                     int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPlateAcquisitionDescription

        public void setPlateAcquisitionDescription​(String description,
                                                   int plateIndex,
                                                   int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the Description property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionEndTime

        public void setPlateAcquisitionEndTime​(Timestamp endTime,
                                               int plateIndex,
                                               int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the EndTime property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionEndTime in interface MetadataStore
        Parameters:
        endTime - EndTime to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionID

        public void setPlateAcquisitionID​(String id,
                                          int plateIndex,
                                          int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the ID property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionMaximumFieldCount

        public void setPlateAcquisitionMaximumFieldCount​(PositiveInteger maximumFieldCount,
                                                         int plateIndex,
                                                         int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the MaximumFieldCount property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionMaximumFieldCount in interface MetadataStore
        Parameters:
        maximumFieldCount - MaximumFieldCount to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionName

        public void setPlateAcquisitionName​(String name,
                                            int plateIndex,
                                            int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the Name property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionName in interface MetadataStore
        Parameters:
        name - Name to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionStartTime

        public void setPlateAcquisitionStartTime​(Timestamp startTime,
                                                 int plateIndex,
                                                 int plateAcquisitionIndex)
        Description copied from interface: MetadataStore
        Set the StartTime property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionStartTime in interface MetadataStore
        Parameters:
        startTime - StartTime to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
      • setPlateAcquisitionWellSampleRef

        public void setPlateAcquisitionWellSampleRef​(String wellSample,
                                                     int plateIndex,
                                                     int plateAcquisitionIndex,
                                                     int wellSampleRefIndex)
        Description copied from interface: MetadataStore
        Set the WellSampleRef property of PlateAcquisition.
        Specified by:
        setPlateAcquisitionWellSampleRef in interface MetadataStore
        Parameters:
        wellSample - WellSampleRef to set.
        plateIndex - the Plate index.
        plateAcquisitionIndex - the PlateAcquisition index.
        wellSampleRefIndex - WellSampleRef index (unused).
      • setPointAnnotationRef

        public void setPointAnnotationRef​(String annotation,
                                          int ROIIndex,
                                          int shapeIndex,
                                          int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Point.
        Specified by:
        setPointAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPointFillColor

        public void setPointFillColor​(Color fillColor,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Point.
        Specified by:
        setPointFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFillRule

        public void setPointFillRule​(FillRule fillRule,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Point.
        Specified by:
        setPointFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontFamily

        public void setPointFontFamily​(FontFamily fontFamily,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Point.
        Specified by:
        setPointFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontSize

        public void setPointFontSize​(Length fontSize,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Point.
        Specified by:
        setPointFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointFontStyle

        public void setPointFontStyle​(FontStyle fontStyle,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Point.
        Specified by:
        setPointFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointID

        public void setPointID​(String id,
                               int ROIIndex,
                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Point.
        Specified by:
        setPointID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointLocked

        public void setPointLocked​(Boolean locked,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Point.
        Specified by:
        setPointLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeColor

        public void setPointStrokeColor​(Color strokeColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Point.
        Specified by:
        setPointStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeDashArray

        public void setPointStrokeDashArray​(String strokeDashArray,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Point.
        Specified by:
        setPointStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointStrokeWidth

        public void setPointStrokeWidth​(Length strokeWidth,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Point.
        Specified by:
        setPointStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointText

        public void setPointText​(String text,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Point.
        Specified by:
        setPointText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheC

        public void setPointTheC​(NonNegativeInteger theC,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Point.
        Specified by:
        setPointTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheT

        public void setPointTheT​(NonNegativeInteger theT,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Point.
        Specified by:
        setPointTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTheZ

        public void setPointTheZ​(NonNegativeInteger theZ,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Point.
        Specified by:
        setPointTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointTransform

        public void setPointTransform​(AffineTransform transform,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Point.
        Specified by:
        setPointTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointX

        public void setPointX​(Double x,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Point.
        Specified by:
        setPointX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPointY

        public void setPointY​(Double y,
                              int ROIIndex,
                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Point.
        Specified by:
        setPointY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonAnnotationRef

        public void setPolygonAnnotationRef​(String annotation,
                                            int ROIIndex,
                                            int shapeIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Polygon.
        Specified by:
        setPolygonAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPolygonFillColor

        public void setPolygonFillColor​(Color fillColor,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Polygon.
        Specified by:
        setPolygonFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFillRule

        public void setPolygonFillRule​(FillRule fillRule,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Polygon.
        Specified by:
        setPolygonFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontFamily

        public void setPolygonFontFamily​(FontFamily fontFamily,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Polygon.
        Specified by:
        setPolygonFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontSize

        public void setPolygonFontSize​(Length fontSize,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Polygon.
        Specified by:
        setPolygonFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonFontStyle

        public void setPolygonFontStyle​(FontStyle fontStyle,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Polygon.
        Specified by:
        setPolygonFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonID

        public void setPolygonID​(String id,
                                 int ROIIndex,
                                 int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Polygon.
        Specified by:
        setPolygonID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonLocked

        public void setPolygonLocked​(Boolean locked,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Polygon.
        Specified by:
        setPolygonLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonPoints

        public void setPolygonPoints​(String points,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Points property of Polygon.
        Specified by:
        setPolygonPoints in interface MetadataStore
        Parameters:
        points - Points to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeColor

        public void setPolygonStrokeColor​(Color strokeColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Polygon.
        Specified by:
        setPolygonStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeDashArray

        public void setPolygonStrokeDashArray​(String strokeDashArray,
                                              int ROIIndex,
                                              int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Polygon.
        Specified by:
        setPolygonStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonStrokeWidth

        public void setPolygonStrokeWidth​(Length strokeWidth,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Polygon.
        Specified by:
        setPolygonStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonText

        public void setPolygonText​(String text,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Polygon.
        Specified by:
        setPolygonText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheC

        public void setPolygonTheC​(NonNegativeInteger theC,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Polygon.
        Specified by:
        setPolygonTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheT

        public void setPolygonTheT​(NonNegativeInteger theT,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Polygon.
        Specified by:
        setPolygonTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTheZ

        public void setPolygonTheZ​(NonNegativeInteger theZ,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Polygon.
        Specified by:
        setPolygonTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolygonTransform

        public void setPolygonTransform​(AffineTransform transform,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Polygon.
        Specified by:
        setPolygonTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineAnnotationRef

        public void setPolylineAnnotationRef​(String annotation,
                                             int ROIIndex,
                                             int shapeIndex,
                                             int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Polyline.
        Specified by:
        setPolylineAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setPolylineFillColor

        public void setPolylineFillColor​(Color fillColor,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Polyline.
        Specified by:
        setPolylineFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFillRule

        public void setPolylineFillRule​(FillRule fillRule,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Polyline.
        Specified by:
        setPolylineFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontFamily

        public void setPolylineFontFamily​(FontFamily fontFamily,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Polyline.
        Specified by:
        setPolylineFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontSize

        public void setPolylineFontSize​(Length fontSize,
                                        int ROIIndex,
                                        int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Polyline.
        Specified by:
        setPolylineFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineFontStyle

        public void setPolylineFontStyle​(FontStyle fontStyle,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Polyline.
        Specified by:
        setPolylineFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineID

        public void setPolylineID​(String id,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Polyline.
        Specified by:
        setPolylineID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineLocked

        public void setPolylineLocked​(Boolean locked,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Polyline.
        Specified by:
        setPolylineLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineMarkerEnd

        public void setPolylineMarkerEnd​(Marker markerEnd,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerEnd property of Polyline.
        Specified by:
        setPolylineMarkerEnd in interface MetadataStore
        Parameters:
        markerEnd - MarkerEnd to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineMarkerStart

        public void setPolylineMarkerStart​(Marker markerStart,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the MarkerStart property of Polyline.
        Specified by:
        setPolylineMarkerStart in interface MetadataStore
        Parameters:
        markerStart - MarkerStart to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylinePoints

        public void setPolylinePoints​(String points,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Points property of Polyline.
        Specified by:
        setPolylinePoints in interface MetadataStore
        Parameters:
        points - Points to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeColor

        public void setPolylineStrokeColor​(Color strokeColor,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Polyline.
        Specified by:
        setPolylineStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeDashArray

        public void setPolylineStrokeDashArray​(String strokeDashArray,
                                               int ROIIndex,
                                               int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Polyline.
        Specified by:
        setPolylineStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineStrokeWidth

        public void setPolylineStrokeWidth​(Length strokeWidth,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Polyline.
        Specified by:
        setPolylineStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineText

        public void setPolylineText​(String text,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Polyline.
        Specified by:
        setPolylineText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheC

        public void setPolylineTheC​(NonNegativeInteger theC,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Polyline.
        Specified by:
        setPolylineTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheT

        public void setPolylineTheT​(NonNegativeInteger theT,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Polyline.
        Specified by:
        setPolylineTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTheZ

        public void setPolylineTheZ​(NonNegativeInteger theZ,
                                    int ROIIndex,
                                    int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Polyline.
        Specified by:
        setPolylineTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setPolylineTransform

        public void setPolylineTransform​(AffineTransform transform,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Polyline.
        Specified by:
        setPolylineTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setProjectAnnotationRef

        public void setProjectAnnotationRef​(String annotation,
                                            int projectIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Project.
        Specified by:
        setProjectAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        projectIndex - the Project index.
        annotationRefIndex - AnnotationRef index (unused).
      • setProjectDatasetRef

        public void setProjectDatasetRef​(String dataset,
                                         int projectIndex,
                                         int datasetRefIndex)
        Description copied from interface: MetadataStore
        Set the DatasetRef property of Project.
        Specified by:
        setProjectDatasetRef in interface MetadataStore
        Parameters:
        dataset - DatasetRef to set.
        projectIndex - the Project index.
        datasetRefIndex - DatasetRef index (unused).
      • setProjectDescription

        public void setProjectDescription​(String description,
                                          int projectIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Project.
        Specified by:
        setProjectDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        projectIndex - the Project index.
      • setProjectExperimenterGroupRef

        public void setProjectExperimenterGroupRef​(String experimenterGroup,
                                                   int projectIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterGroupRef property of Project.
        Specified by:
        setProjectExperimenterGroupRef in interface MetadataStore
        Parameters:
        experimenterGroup - ExperimenterGroupRef to set.
        projectIndex - the Project index.
      • setProjectExperimenterRef

        public void setProjectExperimenterRef​(String experimenter,
                                              int projectIndex)
        Description copied from interface: MetadataStore
        Set the ExperimenterRef property of Project.
        Specified by:
        setProjectExperimenterRef in interface MetadataStore
        Parameters:
        experimenter - ExperimenterRef to set.
        projectIndex - the Project index.
      • setProjectID

        public void setProjectID​(String id,
                                 int projectIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Project.
        Specified by:
        setProjectID in interface MetadataStore
        Parameters:
        id - ID to set.
        projectIndex - the Project index.
      • setProjectName

        public void setProjectName​(String name,
                                   int projectIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Project.
        Specified by:
        setProjectName in interface MetadataStore
        Parameters:
        name - Name to set.
        projectIndex - the Project index.
      • setROIAnnotationRef

        public void setROIAnnotationRef​(String annotation,
                                        int ROIIndex,
                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of ROI.
        Specified by:
        setROIAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        annotationRefIndex - AnnotationRef index (unused).
      • setROIDescription

        public void setROIDescription​(String description,
                                      int ROIIndex)
        Description copied from interface: MetadataStore
        Set the Description property of ROI.
        Specified by:
        setROIDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        ROIIndex - the ROI index.
      • setROIID

        public void setROIID​(String id,
                             int ROIIndex)
        Description copied from interface: MetadataStore
        Set the ID property of ROI.
        Specified by:
        setROIID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
      • setROIName

        public void setROIName​(String name,
                               int ROIIndex)
        Description copied from interface: MetadataStore
        Set the Name property of ROI.
        Specified by:
        setROIName in interface MetadataStore
        Parameters:
        name - Name to set.
        ROIIndex - the ROI index.
      • setReagentAnnotationRef

        public void setReagentAnnotationRef​(String annotation,
                                            int screenIndex,
                                            int reagentIndex,
                                            int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Reagent.
        Specified by:
        setReagentAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
        annotationRefIndex - AnnotationRef index (unused).
      • setReagentDescription

        public void setReagentDescription​(String description,
                                          int screenIndex,
                                          int reagentIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Reagent.
        Specified by:
        setReagentDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentID

        public void setReagentID​(String id,
                                 int screenIndex,
                                 int reagentIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Reagent.
        Specified by:
        setReagentID in interface MetadataStore
        Parameters:
        id - ID to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentName

        public void setReagentName​(String name,
                                   int screenIndex,
                                   int reagentIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Reagent.
        Specified by:
        setReagentName in interface MetadataStore
        Parameters:
        name - Name to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setReagentReagentIdentifier

        public void setReagentReagentIdentifier​(String reagentIdentifier,
                                                int screenIndex,
                                                int reagentIndex)
        Description copied from interface: MetadataStore
        Set the ReagentIdentifier property of Reagent.
        Specified by:
        setReagentReagentIdentifier in interface MetadataStore
        Parameters:
        reagentIdentifier - ReagentIdentifier to set.
        screenIndex - the Screen index.
        reagentIndex - the Reagent index.
      • setRectangleAnnotationRef

        public void setRectangleAnnotationRef​(String annotation,
                                              int ROIIndex,
                                              int shapeIndex,
                                              int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Rectangle.
        Specified by:
        setRectangleAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
        annotationRefIndex - AnnotationRef index (unused).
      • setRectangleFillColor

        public void setRectangleFillColor​(Color fillColor,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillColor property of Rectangle.
        Specified by:
        setRectangleFillColor in interface MetadataStore
        Parameters:
        fillColor - FillColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFillRule

        public void setRectangleFillRule​(FillRule fillRule,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FillRule property of Rectangle.
        Specified by:
        setRectangleFillRule in interface MetadataStore
        Parameters:
        fillRule - FillRule to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontFamily

        public void setRectangleFontFamily​(FontFamily fontFamily,
                                           int ROIIndex,
                                           int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontFamily property of Rectangle.
        Specified by:
        setRectangleFontFamily in interface MetadataStore
        Parameters:
        fontFamily - FontFamily to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontSize

        public void setRectangleFontSize​(Length fontSize,
                                         int ROIIndex,
                                         int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontSize property of Rectangle.
        Specified by:
        setRectangleFontSize in interface MetadataStore
        Parameters:
        fontSize - FontSize to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleFontStyle

        public void setRectangleFontStyle​(FontStyle fontStyle,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the FontStyle property of Rectangle.
        Specified by:
        setRectangleFontStyle in interface MetadataStore
        Parameters:
        fontStyle - FontStyle to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleHeight

        public void setRectangleHeight​(Double height,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Height property of Rectangle.
        Specified by:
        setRectangleHeight in interface MetadataStore
        Parameters:
        height - Height to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleID

        public void setRectangleID​(String id,
                                   int ROIIndex,
                                   int shapeIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Rectangle.
        Specified by:
        setRectangleID in interface MetadataStore
        Parameters:
        id - ID to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleLocked

        public void setRectangleLocked​(Boolean locked,
                                       int ROIIndex,
                                       int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Locked property of Rectangle.
        Specified by:
        setRectangleLocked in interface MetadataStore
        Parameters:
        locked - Locked to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeColor

        public void setRectangleStrokeColor​(Color strokeColor,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeColor property of Rectangle.
        Specified by:
        setRectangleStrokeColor in interface MetadataStore
        Parameters:
        strokeColor - StrokeColor to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeDashArray

        public void setRectangleStrokeDashArray​(String strokeDashArray,
                                                int ROIIndex,
                                                int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeDashArray property of Rectangle.
        Specified by:
        setRectangleStrokeDashArray in interface MetadataStore
        Parameters:
        strokeDashArray - StrokeDashArray to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleStrokeWidth

        public void setRectangleStrokeWidth​(Length strokeWidth,
                                            int ROIIndex,
                                            int shapeIndex)
        Description copied from interface: MetadataStore
        Set the StrokeWidth property of Rectangle.
        Specified by:
        setRectangleStrokeWidth in interface MetadataStore
        Parameters:
        strokeWidth - StrokeWidth to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleText

        public void setRectangleText​(String text,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Text property of Rectangle.
        Specified by:
        setRectangleText in interface MetadataStore
        Parameters:
        text - Text to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheC

        public void setRectangleTheC​(NonNegativeInteger theC,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheC property of Rectangle.
        Specified by:
        setRectangleTheC in interface MetadataStore
        Parameters:
        theC - TheC to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheT

        public void setRectangleTheT​(NonNegativeInteger theT,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheT property of Rectangle.
        Specified by:
        setRectangleTheT in interface MetadataStore
        Parameters:
        theT - TheT to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTheZ

        public void setRectangleTheZ​(NonNegativeInteger theZ,
                                     int ROIIndex,
                                     int shapeIndex)
        Description copied from interface: MetadataStore
        Set the TheZ property of Rectangle.
        Specified by:
        setRectangleTheZ in interface MetadataStore
        Parameters:
        theZ - TheZ to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleTransform

        public void setRectangleTransform​(AffineTransform transform,
                                          int ROIIndex,
                                          int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Transform property of Rectangle.
        Specified by:
        setRectangleTransform in interface MetadataStore
        Parameters:
        transform - Transform to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleWidth

        public void setRectangleWidth​(Double width,
                                      int ROIIndex,
                                      int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Width property of Rectangle.
        Specified by:
        setRectangleWidth in interface MetadataStore
        Parameters:
        width - Width to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleX

        public void setRectangleX​(Double x,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the X property of Rectangle.
        Specified by:
        setRectangleX in interface MetadataStore
        Parameters:
        x - X to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRectangleY

        public void setRectangleY​(Double y,
                                  int ROIIndex,
                                  int shapeIndex)
        Description copied from interface: MetadataStore
        Set the Y property of Rectangle.
        Specified by:
        setRectangleY in interface MetadataStore
        Parameters:
        y - Y to set.
        ROIIndex - the ROI index.
        shapeIndex - the Shape index.
      • setRightsRightsHeld

        public void setRightsRightsHeld​(String rightsHeld)
        Description copied from interface: MetadataStore
        Set the RightsHeld property of Rights.
        Specified by:
        setRightsRightsHeld in interface MetadataStore
        Parameters:
        rightsHeld - RightsHeld to set.
      • setRightsRightsHolder

        public void setRightsRightsHolder​(String rightsHolder)
        Description copied from interface: MetadataStore
        Set the RightsHolder property of Rights.
        Specified by:
        setRightsRightsHolder in interface MetadataStore
        Parameters:
        rightsHolder - RightsHolder to set.
      • setScreenAnnotationRef

        public void setScreenAnnotationRef​(String annotation,
                                           int screenIndex,
                                           int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Screen.
        Specified by:
        setScreenAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        screenIndex - the Screen index.
        annotationRefIndex - AnnotationRef index (unused).
      • setScreenDescription

        public void setScreenDescription​(String description,
                                         int screenIndex)
        Description copied from interface: MetadataStore
        Set the Description property of Screen.
        Specified by:
        setScreenDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        screenIndex - the Screen index.
      • setScreenID

        public void setScreenID​(String id,
                                int screenIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Screen.
        Specified by:
        setScreenID in interface MetadataStore
        Parameters:
        id - ID to set.
        screenIndex - the Screen index.
      • setScreenName

        public void setScreenName​(String name,
                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the Name property of Screen.
        Specified by:
        setScreenName in interface MetadataStore
        Parameters:
        name - Name to set.
        screenIndex - the Screen index.
      • setScreenPlateRef

        public void setScreenPlateRef​(String plate,
                                      int screenIndex,
                                      int plateRefIndex)
        Description copied from interface: MetadataStore
        Set the PlateRef property of Screen.
        Specified by:
        setScreenPlateRef in interface MetadataStore
        Parameters:
        plate - PlateRef to set.
        screenIndex - the Screen index.
        plateRefIndex - PlateRef index (unused).
      • setScreenProtocolDescription

        public void setScreenProtocolDescription​(String protocolDescription,
                                                 int screenIndex)
        Description copied from interface: MetadataStore
        Set the ProtocolDescription property of Screen.
        Specified by:
        setScreenProtocolDescription in interface MetadataStore
        Parameters:
        protocolDescription - ProtocolDescription to set.
        screenIndex - the Screen index.
      • setScreenProtocolIdentifier

        public void setScreenProtocolIdentifier​(String protocolIdentifier,
                                                int screenIndex)
        Description copied from interface: MetadataStore
        Set the ProtocolIdentifier property of Screen.
        Specified by:
        setScreenProtocolIdentifier in interface MetadataStore
        Parameters:
        protocolIdentifier - ProtocolIdentifier to set.
        screenIndex - the Screen index.
      • setScreenReagentSetDescription

        public void setScreenReagentSetDescription​(String reagentSetDescription,
                                                   int screenIndex)
        Description copied from interface: MetadataStore
        Set the ReagentSetDescription property of Screen.
        Specified by:
        setScreenReagentSetDescription in interface MetadataStore
        Parameters:
        reagentSetDescription - ReagentSetDescription to set.
        screenIndex - the Screen index.
      • setScreenReagentSetIdentifier

        public void setScreenReagentSetIdentifier​(String reagentSetIdentifier,
                                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the ReagentSetIdentifier property of Screen.
        Specified by:
        setScreenReagentSetIdentifier in interface MetadataStore
        Parameters:
        reagentSetIdentifier - ReagentSetIdentifier to set.
        screenIndex - the Screen index.
      • setScreenType

        public void setScreenType​(String type,
                                  int screenIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Screen.
        Specified by:
        setScreenType in interface MetadataStore
        Parameters:
        type - Type to set.
        screenIndex - the Screen index.
      • setStageLabelName

        public void setStageLabelName​(String name,
                                      int imageIndex)
        Description copied from interface: MetadataStore
        Set the Name property of StageLabel.
        Specified by:
        setStageLabelName in interface MetadataStore
        Parameters:
        name - Name to set.
        imageIndex - the Image index.
      • setStageLabelX

        public void setStageLabelX​(Length x,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the X property of StageLabel.
        Specified by:
        setStageLabelX in interface MetadataStore
        Parameters:
        x - X to set.
        imageIndex - the Image index.
      • setStageLabelY

        public void setStageLabelY​(Length y,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the Y property of StageLabel.
        Specified by:
        setStageLabelY in interface MetadataStore
        Parameters:
        y - Y to set.
        imageIndex - the Image index.
      • setStageLabelZ

        public void setStageLabelZ​(Length z,
                                   int imageIndex)
        Description copied from interface: MetadataStore
        Set the Z property of StageLabel.
        Specified by:
        setStageLabelZ in interface MetadataStore
        Parameters:
        z - Z to set.
        imageIndex - the Image index.
      • setTagAnnotationAnnotationRef

        public void setTagAnnotationAnnotationRef​(String annotation,
                                                  int tagAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TagAnnotation.
        Specified by:
        setTagAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        tagAnnotationIndex - the TagAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTagAnnotationAnnotator

        public void setTagAnnotationAnnotator​(String annotator,
                                              int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TagAnnotation.
        Specified by:
        setTagAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationDescription

        public void setTagAnnotationDescription​(String description,
                                                int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TagAnnotation.
        Specified by:
        setTagAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationID

        public void setTagAnnotationID​(String id,
                                       int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TagAnnotation.
        Specified by:
        setTagAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationNamespace

        public void setTagAnnotationNamespace​(String namespace,
                                              int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TagAnnotation.
        Specified by:
        setTagAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTagAnnotationValue

        public void setTagAnnotationValue​(String value,
                                          int tagAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TagAnnotation.
        Specified by:
        setTagAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        tagAnnotationIndex - the TagAnnotation index.
      • setTermAnnotationAnnotationRef

        public void setTermAnnotationAnnotationRef​(String annotation,
                                                   int termAnnotationIndex,
                                                   int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TermAnnotation.
        Specified by:
        setTermAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        termAnnotationIndex - the TermAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTermAnnotationAnnotator

        public void setTermAnnotationAnnotator​(String annotator,
                                               int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TermAnnotation.
        Specified by:
        setTermAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationDescription

        public void setTermAnnotationDescription​(String description,
                                                 int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TermAnnotation.
        Specified by:
        setTermAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationID

        public void setTermAnnotationID​(String id,
                                        int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TermAnnotation.
        Specified by:
        setTermAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationNamespace

        public void setTermAnnotationNamespace​(String namespace,
                                               int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TermAnnotation.
        Specified by:
        setTermAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTermAnnotationValue

        public void setTermAnnotationValue​(String value,
                                           int termAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TermAnnotation.
        Specified by:
        setTermAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        termAnnotationIndex - the TermAnnotation index.
      • setTiffDataFirstC

        public void setTiffDataFirstC​(NonNegativeInteger firstC,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstC property of TiffData.
        Specified by:
        setTiffDataFirstC in interface MetadataStore
        Parameters:
        firstC - FirstC to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataFirstT

        public void setTiffDataFirstT​(NonNegativeInteger firstT,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstT property of TiffData.
        Specified by:
        setTiffDataFirstT in interface MetadataStore
        Parameters:
        firstT - FirstT to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataFirstZ

        public void setTiffDataFirstZ​(NonNegativeInteger firstZ,
                                      int imageIndex,
                                      int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FirstZ property of TiffData.
        Specified by:
        setTiffDataFirstZ in interface MetadataStore
        Parameters:
        firstZ - FirstZ to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataIFD

        public void setTiffDataIFD​(NonNegativeInteger ifd,
                                   int imageIndex,
                                   int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the IFD property of TiffData.
        Specified by:
        setTiffDataIFD in interface MetadataStore
        Parameters:
        ifd - IFD to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTiffDataPlaneCount

        public void setTiffDataPlaneCount​(NonNegativeInteger planeCount,
                                          int imageIndex,
                                          int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the PlaneCount property of TiffData.
        Specified by:
        setTiffDataPlaneCount in interface MetadataStore
        Parameters:
        planeCount - PlaneCount to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setTimestampAnnotationAnnotationRef

        public void setTimestampAnnotationAnnotationRef​(String annotation,
                                                        int timestampAnnotationIndex,
                                                        int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setTimestampAnnotationAnnotator

        public void setTimestampAnnotationAnnotator​(String annotator,
                                                    int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationDescription

        public void setTimestampAnnotationDescription​(String description,
                                                      int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationID

        public void setTimestampAnnotationID​(String id,
                                             int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationNamespace

        public void setTimestampAnnotationNamespace​(String namespace,
                                                    int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTimestampAnnotationValue

        public void setTimestampAnnotationValue​(Timestamp value,
                                                int timestampAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of TimestampAnnotation.
        Specified by:
        setTimestampAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        timestampAnnotationIndex - the TimestampAnnotation index.
      • setTransmittanceRangeCutIn

        public void setTransmittanceRangeCutIn​(Length cutIn,
                                               int instrumentIndex,
                                               int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutIn property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutIn in interface MetadataStore
        Parameters:
        cutIn - CutIn to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutInTolerance

        public void setTransmittanceRangeCutInTolerance​(Length cutInTolerance,
                                                        int instrumentIndex,
                                                        int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutInTolerance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutInTolerance in interface MetadataStore
        Parameters:
        cutInTolerance - CutInTolerance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutOut

        public void setTransmittanceRangeCutOut​(Length cutOut,
                                                int instrumentIndex,
                                                int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutOut property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutOut in interface MetadataStore
        Parameters:
        cutOut - CutOut to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeCutOutTolerance

        public void setTransmittanceRangeCutOutTolerance​(Length cutOutTolerance,
                                                         int instrumentIndex,
                                                         int filterIndex)
        Description copied from interface: MetadataStore
        Set the CutOutTolerance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeCutOutTolerance in interface MetadataStore
        Parameters:
        cutOutTolerance - CutOutTolerance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setTransmittanceRangeTransmittance

        public void setTransmittanceRangeTransmittance​(PercentFraction transmittance,
                                                       int instrumentIndex,
                                                       int filterIndex)
        Description copied from interface: MetadataStore
        Set the Transmittance property of TransmittanceRange.
        Specified by:
        setTransmittanceRangeTransmittance in interface MetadataStore
        Parameters:
        transmittance - Transmittance to set.
        instrumentIndex - the Instrument index.
        filterIndex - the Filter index.
      • setUUIDFileName

        public void setUUIDFileName​(String fileName,
                                    int imageIndex,
                                    int tiffDataIndex)
        Description copied from interface: MetadataStore
        Set the FileName property of UUID.
        Specified by:
        setUUIDFileName in interface MetadataStore
        Parameters:
        fileName - FileName to set.
        imageIndex - the Image index.
        tiffDataIndex - the TiffData index.
      • setWellAnnotationRef

        public void setWellAnnotationRef​(String annotation,
                                         int plateIndex,
                                         int wellIndex,
                                         int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of Well.
        Specified by:
        setWellAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        annotationRefIndex - AnnotationRef index (unused).
      • setWellColor

        public void setWellColor​(Color color,
                                 int plateIndex,
                                 int wellIndex)
        Description copied from interface: MetadataStore
        Set the Color property of Well.
        Specified by:
        setWellColor in interface MetadataStore
        Parameters:
        color - Color to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellColumn

        public void setWellColumn​(NonNegativeInteger column,
                                  int plateIndex,
                                  int wellIndex)
        Description copied from interface: MetadataStore
        Set the Column property of Well.
        Specified by:
        setWellColumn in interface MetadataStore
        Parameters:
        column - Column to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellExternalDescription

        public void setWellExternalDescription​(String externalDescription,
                                               int plateIndex,
                                               int wellIndex)
        Description copied from interface: MetadataStore
        Set the ExternalDescription property of Well.
        Specified by:
        setWellExternalDescription in interface MetadataStore
        Parameters:
        externalDescription - ExternalDescription to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellExternalIdentifier

        public void setWellExternalIdentifier​(String externalIdentifier,
                                              int plateIndex,
                                              int wellIndex)
        Description copied from interface: MetadataStore
        Set the ExternalIdentifier property of Well.
        Specified by:
        setWellExternalIdentifier in interface MetadataStore
        Parameters:
        externalIdentifier - ExternalIdentifier to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellID

        public void setWellID​(String id,
                              int plateIndex,
                              int wellIndex)
        Description copied from interface: MetadataStore
        Set the ID property of Well.
        Specified by:
        setWellID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellReagentRef

        public void setWellReagentRef​(String reagent,
                                      int plateIndex,
                                      int wellIndex)
        Description copied from interface: MetadataStore
        Set the ReagentRef property of Well.
        Specified by:
        setWellReagentRef in interface MetadataStore
        Parameters:
        reagent - ReagentRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellRow

        public void setWellRow​(NonNegativeInteger row,
                               int plateIndex,
                               int wellIndex)
        Description copied from interface: MetadataStore
        Set the Row property of Well.
        Specified by:
        setWellRow in interface MetadataStore
        Parameters:
        row - Row to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellType

        public void setWellType​(String type,
                                int plateIndex,
                                int wellIndex)
        Description copied from interface: MetadataStore
        Set the Type property of Well.
        Specified by:
        setWellType in interface MetadataStore
        Parameters:
        type - Type to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
      • setWellSampleID

        public void setWellSampleID​(String id,
                                    int plateIndex,
                                    int wellIndex,
                                    int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the ID property of WellSample.
        Specified by:
        setWellSampleID in interface MetadataStore
        Parameters:
        id - ID to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleImageRef

        public void setWellSampleImageRef​(String image,
                                          int plateIndex,
                                          int wellIndex,
                                          int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the ImageRef property of WellSample.
        Specified by:
        setWellSampleImageRef in interface MetadataStore
        Parameters:
        image - ImageRef to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleIndex

        public void setWellSampleIndex​(NonNegativeInteger index,
                                       int plateIndex,
                                       int wellIndex,
                                       int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the Index property of WellSample.
        Specified by:
        setWellSampleIndex in interface MetadataStore
        Parameters:
        index - Index to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSamplePositionX

        public void setWellSamplePositionX​(Length positionX,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the PositionX property of WellSample.
        Specified by:
        setWellSamplePositionX in interface MetadataStore
        Parameters:
        positionX - PositionX to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSamplePositionY

        public void setWellSamplePositionY​(Length positionY,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the PositionY property of WellSample.
        Specified by:
        setWellSamplePositionY in interface MetadataStore
        Parameters:
        positionY - PositionY to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setWellSampleTimepoint

        public void setWellSampleTimepoint​(Timestamp timepoint,
                                           int plateIndex,
                                           int wellIndex,
                                           int wellSampleIndex)
        Description copied from interface: MetadataStore
        Set the Timepoint property of WellSample.
        Specified by:
        setWellSampleTimepoint in interface MetadataStore
        Parameters:
        timepoint - Timepoint to set.
        plateIndex - the Plate index.
        wellIndex - the Well index.
        wellSampleIndex - the WellSample index.
      • setXMLAnnotationAnnotationRef

        public void setXMLAnnotationAnnotationRef​(String annotation,
                                                  int XMLAnnotationIndex,
                                                  int annotationRefIndex)
        Description copied from interface: MetadataStore
        Set the AnnotationRef property of XMLAnnotation.
        Specified by:
        setXMLAnnotationAnnotationRef in interface MetadataStore
        Parameters:
        annotation - AnnotationRef to set.
        XMLAnnotationIndex - the XMLAnnotation index.
        annotationRefIndex - AnnotationRef index (unused).
      • setXMLAnnotationAnnotator

        public void setXMLAnnotationAnnotator​(String annotator,
                                              int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Annotator property of XMLAnnotation.
        Specified by:
        setXMLAnnotationAnnotator in interface MetadataStore
        Parameters:
        annotator - Annotator to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationDescription

        public void setXMLAnnotationDescription​(String description,
                                                int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Description property of XMLAnnotation.
        Specified by:
        setXMLAnnotationDescription in interface MetadataStore
        Parameters:
        description - Description to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationID

        public void setXMLAnnotationID​(String id,
                                       int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the ID property of XMLAnnotation.
        Specified by:
        setXMLAnnotationID in interface MetadataStore
        Parameters:
        id - ID to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationNamespace

        public void setXMLAnnotationNamespace​(String namespace,
                                              int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Namespace property of XMLAnnotation.
        Specified by:
        setXMLAnnotationNamespace in interface MetadataStore
        Parameters:
        namespace - Namespace to set.
        XMLAnnotationIndex - the XMLAnnotation index.
      • setXMLAnnotationValue

        public void setXMLAnnotationValue​(String value,
                                          int XMLAnnotationIndex)
        Description copied from interface: MetadataStore
        Set the Value property of XMLAnnotation.
        Specified by:
        setXMLAnnotationValue in interface MetadataStore
        Parameters:
        value - Value to set.
        XMLAnnotationIndex - the XMLAnnotation index.