All Classes
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All Classes Interface Summary Class Summary Enum Summary Exception Summary Class Description AbstractOMEModelObject AbstractOMEXMLMetadata A utility class for constructing and manipulating OME-XML DOMs.AcquisitionMode AcquisitionModeEnumHandler Enumeration handler for AcquisitionMode.AffineTransform AggregateMetadata A metadata store which delegates the actual storage to one or more sub metadata stores.Angle Angle quantity.Annotation AnnotationRef Arc ArcType ArcTypeEnumHandler Enumeration handler for ArcType.BaseMetadata A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.BasicAnnotation BinaryFile BinaryOnly BinData Binning BinningEnumHandler Enumeration handler for Binning.BooleanAnnotation Channel ChannelRef Color Primitive type that represents an RGBA color.CommentAnnotation Compression CompressionEnumHandler Enumeration handler for Compression.ContrastMethod ContrastMethodEnumHandler Enumeration handler for ContrastMethod.Correction CorrectionEnumHandler Enumeration handler for Correction.Dataset DatasetRef Detector DetectorSettings DetectorType DetectorTypeEnumHandler Enumeration handler for DetectorType.Dichroic DichroicRef DimensionOrder DimensionOrderEnumHandler Enumeration handler for DimensionOrder.DoubleAnnotation DummyMetadata A dummy implementation forMetadataStore
andMetadataRetrieve
that is used when no other metadata implementations are available.ElectricPotential ElectricPotential quantity.Ellipse EmissionFilterRef Enumeration Abstract superclass for all enumerations.EnumerationException EnumerationException is the exception thrown when an enumeration is invalid or not found.ExcitationFilterRef Experiment Experimenter ExperimenterGroup ExperimenterGroupRef ExperimenterRef ExperimentRef ExperimentType ExperimentTypeEnumHandler Enumeration handler for ExperimentType.External Filament FilamentType FilamentTypeEnumHandler Enumeration handler for FilamentType.FileAnnotation FillRule FillRuleEnumHandler Enumeration handler for FillRule.Filter FilterMetadata An implementation ofMetadataStore
that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.FilterRef FilterSet FilterSetRef FilterType FilterTypeEnumHandler Enumeration handler for FilterType.Folder FolderRef FontFamily FontFamilyEnumHandler Enumeration handler for FontFamily.FontStyle FontStyleEnumHandler Enumeration handler for FontStyle.Frequency Frequency quantity.GenericExcitationSource IEnumerationHandler An enumeration provider for making OME data model enumerations available.IlluminationType IlluminationTypeEnumHandler Enumeration handler for IlluminationType.Image ImageRef ImagingEnvironment IMetadata A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.Immersion ImmersionEnumHandler Enumeration handler for Immersion.Instrument InstrumentRef Label Laser LaserMedium LaserMediumEnumHandler Enumeration handler for LaserMedium.LaserType LaserTypeEnumHandler Enumeration handler for LaserType.Leader Length Length quantity.LightEmittingDiode LightPath LightSource LightSourceSettings Line ListAnnotation LongAnnotation ManufacturerSpec MapAnnotation MapPair Simple string/string container.Marker MarkerEnumHandler Enumeration handler for Marker.Mask Medium MediumEnumHandler Enumeration handler for Medium.MetadataConverter A utility class containing a method for piping a sourceMetadataRetrieve
object into a destinationMetadataStore
.MetadataOnly MetadataRetrieve A proxy whose responsibility it is to extract biological image data from a particular storage medium.MetadataRoot Abstract metadata root node.MetadataStore A proxy whose responsibility it is to marshal biological image data into a particular storage medium.MicrobeamManipulation MicrobeamManipulationRef MicrobeamManipulationType MicrobeamManipulationTypeEnumHandler Enumeration handler for MicrobeamManipulationType.Microscope MicroscopeType MicroscopeTypeEnumHandler Enumeration handler for MicroscopeType.NamingConvention NamingConventionEnumHandler Enumeration handler for NamingConvention.NonNegativeFloat A float whose constraints are bound to Java's 64-bit float (double) and a further non-negative restriction.NonNegativeInteger An integer whose constraints are bound to Java's 32-bit signed integer type and a further non-negative restriction.NonNegativeLong An integer whose constraints are bound to Java's 64-bit signed integer type and a further non-negative restriction.NumericAnnotation Objective ObjectiveSettings OME OMEModel OMEModelImpl OMEModelObject OMEXMLMetadata A utility class for constructing and manipulating OME-XML DOMs.OMEXMLMetadataImpl A metadata store implementation for constructing and manipulating OME-XML DOMs for the current version of OME-XML.OMEXMLMetadataRoot A utility class for constructing and manipulating OME-XML DOMs.PercentFraction A floating point value whose constraints are bound to Java's 32-bit floating point type and a further 0.0f minimum and 1.0f maximum.Pixels PixelType PixelTypeEnumHandler Enumeration handler for PixelType.Plane Plate PlateAcquisition PlateRef Point Polygon Polyline PositiveFloat A float whose constraints are bound to Java's 64-bit float (double) and a further positive restriction.PositiveInteger An integer whose constraints are bound to Java's 32-bit signed integer type and a further positive restriction.PositiveLong An integer whose constraints are bound to Java's 64-bit signed integer type and a further positive restriction.Power Power quantity.Pressure Pressure quantity.PrimitiveNumber A primitive type from an XSD definition with a given set of constraints.PrimitiveType<T> A primitive type from an XSD definition with a given set of constraints.Project ProjectRef Pulse PulseEnumHandler Enumeration handler for Pulse.Pump Quantity An abstract quantity.Reagent ReagentRef Rectangle Reference ReferenceList<T> Rights ROI ROIRef Screen Settings Shape StageLabel StructuredAnnotations TagAnnotation Temperature Temperature quantity.TermAnnotation TextAnnotation TiffData Time Time quantity.Timestamp Primitive type that represents an ISO 8601 timestamp.TimestampAnnotation TransmittanceRange TypeAnnotation Union Unit<Q extends Quantity> Unit of measurement.UNITS Defines unit constants corresponding to unit classes in ome.units.unit.*UnitsElectricPotential UnitsElectricPotentialEnumHandler Enumeration handler for UnitsElectricPotential.UnitsFrequency UnitsFrequencyEnumHandler Enumeration handler for UnitsFrequency.UnitsLength UnitsLengthEnumHandler Enumeration handler for UnitsLength.UnitsPower UnitsPowerEnumHandler Enumeration handler for UnitsPower.UnitsPressure UnitsPressureEnumHandler Enumeration handler for UnitsPressure.UnitsTemperature UnitsTemperatureEnumHandler Enumeration handler for UnitsTemperature.UnitsTime UnitsTimeEnumHandler Enumeration handler for UnitsTime.UUID Well WellSample WellSampleRef XMLAnnotation XMLMockObjects Creates XML objects for the 2010-06 schema.XMLWriter Methods to write the XML tags to the files.