Package ome.xml.model

Class WellSample

    • Constructor Detail

      • WellSample

        public WellSample()
        Default constructor.
      • WellSample

        public WellSample​(Element element,
                          OMEModel model)
                   throws EnumerationException
        Constructs WellSample recursively from an XML DOM tree.
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • WellSample

        public WellSample​(WellSample orig)
        Copy constructor.
    • Method Detail

      • update

        public void update​(Element element,
                           OMEModel model)
                    throws EnumerationException
        Updates WellSample recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.
        Specified by:
        update in interface OMEModelObject
        Overrides:
        update in class AbstractOMEModelObject
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.
      • link

        public boolean link​(Reference reference,
                            OMEModelObject o)
        Description copied from interface: OMEModelObject
        Link a given OME model object to this model object.
        Specified by:
        link in interface OMEModelObject
        Overrides:
        link in class AbstractOMEModelObject
        Parameters:
        reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.
        o - Model object to link to.
        Returns:
        true if this model object was able to handle the reference, false otherwise.
      • getID

        public String getID()
      • setID

        public void setID​(String id)
      • getPositionX

        public Length getPositionX()
      • setPositionX

        public void setPositionX​(Length positionX)
      • getPositionXUnitXsdDefault

        public static String getPositionXUnitXsdDefault()
      • getPositionY

        public Length getPositionY()
      • setPositionY

        public void setPositionY​(Length positionY)
      • getPositionYUnitXsdDefault

        public static String getPositionYUnitXsdDefault()
      • getTimepoint

        public Timestamp getTimepoint()
      • setTimepoint

        public void setTimepoint​(Timestamp timepoint)
      • getLinkedImage

        public Image getLinkedImage()
      • linkImage

        public void linkImage​(Image o)
      • unlinkImage

        public void unlinkImage​(Image o)
      • sizeOfLinkedPlateAcquisitionList

        public int sizeOfLinkedPlateAcquisitionList()
      • getLinkedPlateAcquisition

        public PlateAcquisition getLinkedPlateAcquisition​(int index)
      • linkPlateAcquisition

        public boolean linkPlateAcquisition​(PlateAcquisition o)
      • unlinkPlateAcquisition

        public boolean unlinkPlateAcquisition​(PlateAcquisition o)
      • getWell

        public Well getWell()
      • setWell

        public void setWell​(Well well_BackReference)
      • asXMLElement

        public Element asXMLElement​(Document document,
                                    Element WellSample_element)
        Description copied from class: AbstractOMEModelObject
        Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
        Overrides:
        asXMLElement in class AbstractOMEModelObject
        Parameters:
        document - Destination document for element creation, etc.
        WellSample_element - Element from the subclass. If null a new element will be created of this class.
        Returns:
        element populated with properties from this class.