Package ome.xml.model
Class Well
java.lang.Object
ome.xml.model.AbstractOMEModelObject
ome.xml.model.Well
- All Implemented Interfaces:
OMEModelObject
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Field Summary
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionvoidaddWellSample(WellSample wellSample) asXMLElement(Document document) Takes the entire object hierarchy and produces an XML DOM tree.asXMLElement(Document document, Element Well_element) Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.voidgetColor()getID()getLinkedAnnotation(int index) getPlate()getRow()getType()getWellSample(int index) booleanlink(Reference reference, OMEModelObject o) Link a given OME model object to this model object.booleanvoidvoidremoveWellSample(WellSample wellSample) voidvoidsetColumn(NonNegativeInteger column) voidsetExternalDescription(String externalDescription) voidsetExternalIdentifier(String externalIdentifier) voidsetLinkedAnnotation(int index, Annotation o) voidvoidsetRow(NonNegativeInteger row) voidsetWellSample(int index, WellSample wellSample) intintbooleanvoidvoidUpdates Well recursively from an XML DOM tree.Methods inherited from class ome.xml.model.AbstractOMEModelObject
getChildrenByTagName, stripNamespacePrefix
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Field Details
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NAMESPACE
- See Also:
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Constructor Details
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Well
public Well()Default constructor. -
Well
Constructs Well recursively from an XML DOM tree.- Parameters:
element- Root of the XML DOM tree to construct a model object graph from.model- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException- If there is an error instantiating an enumeration during model object creation.
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Well
Copy constructor.
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Method Details
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update
Updates Well recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.- Specified by:
updatein interfaceOMEModelObject- Overrides:
updatein classAbstractOMEModelObject- Parameters:
element- Root of the XML DOM tree to construct a model object graph from.model- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException- If there is an error instantiating an enumeration during model object creation.
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link
Description copied from interface:OMEModelObjectLink a given OME model object to this model object.- Specified by:
linkin interfaceOMEModelObject- Overrides:
linkin classAbstractOMEModelObject- Parameters:
reference- The type qualifier for the reference. This should be the corresponding reference type foro. If, for example,ois of typeImage,referenceMUST be of typeImageRef.o- Model object to link to.- Returns:
trueif this model object was able to handle the reference,falseotherwise.
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getID
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setID
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getColumn
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setColumn
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getRow
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setRow
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getExternalDescription
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setExternalDescription
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getExternalIdentifier
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setExternalIdentifier
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getType
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setType
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getColor
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setColor
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sizeOfWellSampleList
public int sizeOfWellSampleList() -
copyWellSampleList
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clearWellSampleList
public void clearWellSampleList() -
getWellSample
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setWellSample
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addWellSample
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removeWellSample
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getLinkedReagent
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linkReagent
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unlinkReagent
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sizeOfLinkedAnnotationList
public int sizeOfLinkedAnnotationList() -
copyLinkedAnnotationList
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getLinkedAnnotation
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setLinkedAnnotation
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linkAnnotation
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unlinkAnnotation
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getPlate
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setPlate
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asXMLElement
Description copied from interface:OMEModelObjectTakes the entire object hierarchy and produces an XML DOM tree.- Specified by:
asXMLElementin interfaceOMEModelObject- Specified by:
asXMLElementin classAbstractOMEModelObject- Parameters:
document- Destination document for element creation, etc.- Returns:
- XML DOM tree root element for this model object.
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asXMLElement
Description copied from class:AbstractOMEModelObjectTakes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.- Overrides:
asXMLElementin classAbstractOMEModelObject- Parameters:
document- Destination document for element creation, etc.Well_element- Element from the subclass. Ifnulla new element will be created of this class.- Returns:
elementpopulated with properties from this class.
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