Package ome.xml.model
Class Experiment
java.lang.Object
ome.xml.model.AbstractOMEModelObject
ome.xml.model.Experiment
- All Implemented Interfaces:
OMEModelObject
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Field Summary
Fields -
Constructor Summary
ConstructorsConstructorDescriptionDefault constructor.Experiment(Experiment orig) Copy constructor.Experiment(Element element, OMEModel model) Constructs Experiment recursively from an XML DOM tree. -
Method Summary
Modifier and TypeMethodDescriptionvoidaddMicrobeamManipulation(MicrobeamManipulation microbeamManipulation) asXMLElement(Document document) Takes the entire object hierarchy and produces an XML DOM tree.asXMLElement(Document document, Element Experiment_element) Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.voidgetID()getLinkedImage(int index) getMicrobeamManipulation(int index) getType()booleanlink(Reference reference, OMEModelObject o) Link a given OME model object to this model object.voidbooleanvoidremoveMicrobeamManipulation(MicrobeamManipulation microbeamManipulation) voidsetDescription(String description) voidsetLinkedImage(int index, Image o) setMicrobeamManipulation(int index, MicrobeamManipulation microbeamManipulation) voidsetType(ExperimentType type) intintvoidbooleanunlinkImage(Image o) voidUpdates Experiment recursively from an XML DOM tree.Methods inherited from class ome.xml.model.AbstractOMEModelObject
getChildrenByTagName, stripNamespacePrefix
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Field Details
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NAMESPACE
- See Also:
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Constructor Details
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Experiment
public Experiment()Default constructor. -
Experiment
Constructs Experiment recursively from an XML DOM tree.- Parameters:
element- Root of the XML DOM tree to construct a model object graph from.model- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException- If there is an error instantiating an enumeration during model object creation.
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Experiment
Copy constructor.
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Method Details
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update
Updates Experiment recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.- Specified by:
updatein interfaceOMEModelObject- Overrides:
updatein classAbstractOMEModelObject- Parameters:
element- Root of the XML DOM tree to construct a model object graph from.model- Handler for the OME model which keeps track of instances and references seen during object population.- Throws:
EnumerationException- If there is an error instantiating an enumeration during model object creation.
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link
Description copied from interface:OMEModelObjectLink a given OME model object to this model object.- Specified by:
linkin interfaceOMEModelObject- Overrides:
linkin classAbstractOMEModelObject- Parameters:
reference- The type qualifier for the reference. This should be the corresponding reference type foro. If, for example,ois of typeImage,referenceMUST be of typeImageRef.o- Model object to link to.- Returns:
trueif this model object was able to handle the reference,falseotherwise.
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getType
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setType
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getID
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setID
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getDescription
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setDescription
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getLinkedExperimenter
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linkExperimenter
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unlinkExperimenter
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sizeOfMicrobeamManipulationList
public int sizeOfMicrobeamManipulationList() -
copyMicrobeamManipulationList
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clearMicrobeamManipulationList
public void clearMicrobeamManipulationList() -
getMicrobeamManipulation
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setMicrobeamManipulation
public MicrobeamManipulation setMicrobeamManipulation(int index, MicrobeamManipulation microbeamManipulation) -
addMicrobeamManipulation
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removeMicrobeamManipulation
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sizeOfLinkedImageList
public int sizeOfLinkedImageList() -
copyLinkedImageList
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getLinkedImage
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setLinkedImage
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linkImage
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unlinkImage
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asXMLElement
Description copied from interface:OMEModelObjectTakes the entire object hierarchy and produces an XML DOM tree.- Specified by:
asXMLElementin interfaceOMEModelObject- Specified by:
asXMLElementin classAbstractOMEModelObject- Parameters:
document- Destination document for element creation, etc.- Returns:
- XML DOM tree root element for this model object.
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asXMLElement
Description copied from class:AbstractOMEModelObjectTakes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.- Overrides:
asXMLElementin classAbstractOMEModelObject- Parameters:
document- Destination document for element creation, etc.Experiment_element- Element from the subclass. Ifnulla new element will be created of this class.- Returns:
elementpopulated with properties from this class.
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