User Information¶
Every release of Bio-Formats includes a plugin for ImageJ/Fiji, a set of command line utilities and a MATLAB toolbox.
Using Bio-Formats with ImageJ and Fiji¶
The following sections explain the features of Bio-Formats and how to use it within ImageJ and Fiji:
See also
Command line tools¶
The Bio-Formats command line tools provide a complete package for carrying out a variety of tasks:
- Command line tools overview
- Displaying images and metadata
- Converting a file to different format
- Validating XML in an OME-TIFF
- Editing XML in an OME-TIFF
- List formats by domain
- List supported file formats
- Display file in ImageJ
- Format XML data
- Create a high-content screen for testing
- “Precompressed” tiles
See also
Using Bio-Formats in MATLAB/Octave¶
The following pages explain how to install and use Bio-Formats in MATLAB or Octave:
Third-party applications¶
Several third-party libraries and applications use Bio-Formats to read and write imaging formats. The list below includes the projects registered as Community partners on the image.sc forum which are known to use Bio-Formats for reading imaging file formats. The forum is the primary discussion channel for these software projects and should be used for any questions regarding installation, development or usage: