Started by upstream project "Trigger" build number 75 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-image The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-image/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/snoopycrimecop/bio-formats-build # timeout=10 Pruning obsolete local branches Fetching upstream changes from https://github.com/snoopycrimecop/bio-formats-build > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress --prune -- https://github.com/snoopycrimecop/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse origin/merge_ci^{commit} # timeout=10 Checking out Revision d44c3a7eeda636dbd2e8f7a556a16195ff136588 (origin/merge_ci) > git config core.sparsecheckout # timeout=10 > git checkout -f d44c3a7eeda636dbd2e8f7a556a16195ff136588 # timeout=10 Commit message: "Update component versions" > git rev-list --no-walk aeb87e828737bb560a23edfa9aae2c4cf443e23b # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [BIOFORMATS-image] $ /bin/bash -xe /tmp/jenkins16999046145236253143.sh ++ date +%u + (( 5 % 4 == 1 )) + BASE_IMAGE=openjdk:25-ea-8-jdk-slim-bullseye + sudo docker pull openjdk:25-ea-8-jdk-slim-bullseye 25-ea-8-jdk-slim-bullseye: Pulling from library/openjdk Digest: sha256:a203d8cd0258ebd0ca3554b4a5d6b0e581a0debdfac688bce0bd047fecfd37c5 Status: Image is up to date for openjdk:25-ea-8-jdk-slim-bullseye docker.io/library/openjdk:25-ea-8-jdk-slim-bullseye + TAG=snoopycrimecop/bioformats:merge_ci + sudo docker build -t snoopycrimecop/bioformats:merge_ci . --build-arg BUILD_IMAGE=openjdk:25-ea-8-jdk-slim-bullseye #0 building with "default" instance using docker driver #1 [internal] load build definition from Dockerfile #1 transferring dockerfile: 1.08kB done #1 DONE 0.0s #2 [internal] load metadata for docker.io/library/openjdk:25-ea-8-jdk-slim-bullseye #2 DONE 0.0s #3 [internal] load .dockerignore #3 transferring context: 2B done #3 DONE 0.0s #4 [ 1/14] FROM docker.io/library/openjdk:25-ea-8-jdk-slim-bullseye #4 DONE 0.0s #5 [internal] load build context #5 transferring context: 990.15kB 0.0s done #5 DONE 0.0s #6 [ 2/14] RUN apt-get -q update && apt-get -qy install maven ant git python3-venv #6 CACHED #7 [ 3/14] RUN id 1000 || useradd -u 1000 -ms /bin/bash build #7 CACHED #8 [ 4/14] COPY --chown=1000:1000 . /bio-formats-build #8 DONE 0.1s #9 [ 5/14] WORKDIR /bio-formats-build #9 DONE 0.0s #10 [ 6/14] RUN git submodule update --init #10 1.355 Submodule 'ZarrReader' (https://github.com/snoopycrimecop/ZarrReader.git) registered for path 'ZarrReader' #10 1.355 Submodule 'bio-formats-documentation' (https://github.com/snoopycrimecop/bio-formats-documentation.git) registered for path 'bio-formats-documentation' #10 1.356 Submodule 'bio-formats-examples' (https://github.com/snoopycrimecop/bio-formats-examples.git) registered for path 'bio-formats-examples' #10 1.356 Submodule 'bioformats' (https://github.com/snoopycrimecop/bioformats.git) registered for path 'bioformats' #10 1.357 Submodule 'ome-codecs' (https://github.com/snoopycrimecop/ome-codecs.git) registered for path 'ome-codecs' #10 1.357 Submodule 'ome-common-java' (https://github.com/snoopycrimecop/ome-common-java.git) registered for path 'ome-common-java' #10 1.358 Submodule 'ome-jai' (https://github.com/snoopycrimecop/ome-jai.git) registered for path 'ome-jai' #10 1.358 Submodule 'ome-mdbtools' (https://github.com/snoopycrimecop/ome-mdbtools.git) registered for path 'ome-mdbtools' #10 1.358 Submodule 'ome-metakit' (https://github.com/snoopycrimecop/ome-metakit.git) registered for path 'ome-metakit' #10 1.359 Submodule 'ome-model' (https://github.com/snoopycrimecop/ome-model.git) registered for path 'ome-model' #10 1.359 Submodule 'ome-poi' (https://github.com/snoopycrimecop/ome-poi.git) registered for path 'ome-poi' #10 1.360 Submodule 'ome-stubs' (https://github.com/snoopycrimecop/ome-stubs.git) registered for path 'ome-stubs' #10 1.364 Cloning into '/bio-formats-build/ZarrReader'... #10 3.056 Cloning into '/bio-formats-build/bio-formats-documentation'... #10 4.149 Cloning into '/bio-formats-build/bio-formats-examples'... #10 4.728 Cloning into '/bio-formats-build/bioformats'... #10 23.78 Cloning into '/bio-formats-build/ome-codecs'... #10 24.40 Cloning into '/bio-formats-build/ome-common-java'... #10 24.96 Cloning into '/bio-formats-build/ome-jai'... #10 25.66 Cloning into '/bio-formats-build/ome-mdbtools'... #10 26.26 Cloning into '/bio-formats-build/ome-metakit'... #10 26.72 Cloning into '/bio-formats-build/ome-model'... #10 28.32 Cloning into '/bio-formats-build/ome-poi'... #10 29.02 Cloning into '/bio-formats-build/ome-stubs'... #10 29.61 Submodule path 'ZarrReader': checked out '95777753fb8e219b3048f20ef1c02eaae0208f63' #10 29.66 Submodule path 'bio-formats-documentation': checked out 'ba9d872511705b1a6f1f743411dd5e10c647f36d' #10 29.69 Submodule path 'bio-formats-examples': checked out '3e076a10fe58b5f1de0ceb9ff2b7d8291d99c58f' #10 29.93 Submodule path 'bioformats': checked out '620e79fc8c29920b62b17bdaa3c5bbca6274bf50' #10 29.96 Submodule path 'ome-codecs': checked out '292fd8c1fed596ac66fa2814dc71f9f99392d122' #10 30.00 Submodule path 'ome-common-java': checked out '6b8372f4aef0c43ab06aff16411c136086cbfb7e' #10 30.08 Submodule path 'ome-jai': checked out 'ee131aca7ee15b17acc850d9ffbe1745b3d9a3b5' #10 30.11 Submodule path 'ome-mdbtools': checked out '860978b9ffd5ae403ddf840e8e74e6f083dc0058' #10 30.14 Submodule path 'ome-metakit': checked out '37133e26d126a746443f137db0555cbede7fc836' #10 30.22 Submodule path 'ome-model': checked out '41bbaf926fe848c71a25376ddda5fae5ba02d421' #10 30.30 Submodule path 'ome-poi': checked out 'b2cd261f30c33395018c8ffda5511b52ab1e35ea' #10 30.33 Submodule path 'ome-stubs': checked out '5862eb36dff2b12c3b4ee3b7cab70a9122f60639' #10 DONE 30.5s #11 [ 7/14] RUN git submodule foreach -q --recursive 'branch="$(git config -f $toplevel/.gitmodules submodule.$name.branch)"; git switch $branch' #11 0.198 Switched to a new branch 'merge_ci' #11 0.198 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.216 Switched to branch 'merge_ci' #11 0.216 Your branch is up to date with 'origin/merge_ci'. #11 0.224 Switched to branch 'merge_ci' #11 0.224 Your branch is up to date with 'origin/merge_ci'. #11 0.366 Switched to branch 'merge_ci' #11 0.367 Your branch is up to date with 'origin/merge_ci'. #11 0.378 Switched to a new branch 'merge_ci' #11 0.378 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.393 Switched to a new branch 'merge_ci' #11 0.393 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.428 Switched to a new branch 'merge_ci' #11 0.428 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.439 Switched to a new branch 'merge_ci' #11 0.439 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.449 Switched to a new branch 'merge_ci' #11 0.449 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.505 Switched to a new branch 'merge_ci' #11 0.505 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.543 Switched to a new branch 'merge_ci' #11 0.543 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 0.551 Switched to a new branch 'merge_ci' #11 0.552 Branch 'merge_ci' set up to track remote branch 'merge_ci' from 'origin'. #11 DONE 0.6s #12 [ 8/14] RUN python3 -m venv /bio-formats-build/venv #12 DONE 4.3s #13 [ 9/14] RUN pip install -r bio-formats-documentation/requirements.txt #13 1.790 Collecting Sphinx #13 1.904 Downloading sphinx-7.4.7-py3-none-any.whl (3.4 MB) #13 2.214 Collecting sphinx-rtd-theme #13 2.229 Downloading sphinx_rtd_theme-3.1.0-py2.py3-none-any.whl (7.7 MB) #13 2.677 Collecting sphinxcontrib-htmlhelp>=2.0.0 #13 2.689 Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) #13 2.774 Collecting sphinxcontrib-devhelp #13 2.786 Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) #13 2.949 Collecting Pygments>=2.17 #13 2.962 Downloading pygments-2.19.2-py3-none-any.whl (1.2 MB) #13 3.064 Collecting sphinxcontrib-applehelp #13 3.077 Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) #13 3.196 Collecting sphinxcontrib-serializinghtml>=1.1.9 #13 3.208 Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) #13 3.360 Collecting packaging>=23.0 #13 3.373 Downloading packaging-26.0-py3-none-any.whl (74 kB) #13 3.543 Collecting tomli>=2 #13 3.556 Downloading tomli-2.4.0-py3-none-any.whl (14 kB) #13 3.599 Collecting alabaster~=0.7.14 #13 3.612 Downloading alabaster-0.7.16-py3-none-any.whl (13 kB) #13 3.751 Collecting Jinja2>=3.1 #13 3.763 Downloading jinja2-3.1.6-py3-none-any.whl (134 kB) #13 3.812 Collecting sphinxcontrib-qthelp #13 3.825 Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) #13 3.876 Collecting imagesize>=1.3 #13 3.889 Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) #13 3.922 Collecting sphinxcontrib-jsmath #13 3.934 Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) #13 4.050 Collecting snowballstemmer>=2.2 #13 4.062 Downloading snowballstemmer-3.0.1-py3-none-any.whl (103 kB) #13 4.170 Collecting requests>=2.30.0 #13 4.183 Downloading requests-2.32.5-py3-none-any.whl (64 kB) #13 4.344 Collecting importlib-metadata>=6.0 #13 4.357 Downloading importlib_metadata-8.7.1-py3-none-any.whl (27 kB) #13 4.502 Collecting docutils<0.22,>=0.20 #13 4.515 Downloading docutils-0.21.2-py3-none-any.whl (587 kB) #13 4.691 Collecting babel>=2.13 #13 4.704 Downloading babel-2.18.0-py3-none-any.whl (10.2 MB) #13 5.400 Collecting zipp>=3.20 #13 5.413 Downloading zipp-3.23.0-py3-none-any.whl (10 kB) #13 5.729 Collecting MarkupSafe>=2.0 #13 5.742 Downloading markupsafe-3.0.3-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (20 kB) #13 5.934 Collecting urllib3<3,>=1.21.1 #13 5.947 Downloading urllib3-2.6.3-py3-none-any.whl (131 kB) #13 6.434 Collecting charset_normalizer<4,>=2 #13 6.447 Downloading charset_normalizer-3.4.4-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (153 kB) #13 6.572 Collecting certifi>=2017.4.17 #13 6.584 Downloading certifi-2026.1.4-py3-none-any.whl (152 kB) #13 6.654 Collecting idna<4,>=2.5 #13 6.667 Downloading idna-3.11-py3-none-any.whl (71 kB) #13 6.769 Collecting sphinxcontrib-jquery<5,>=4 #13 6.782 Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) #13 7.086 Installing collected packages: zipp, urllib3, MarkupSafe, idna, charset-normalizer, certifi, tomli, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, requests, Pygments, packaging, Jinja2, importlib-metadata, imagesize, docutils, babel, alabaster, Sphinx, sphinxcontrib-jquery, sphinx-rtd-theme #13 10.01 Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.3 Pygments-2.19.2 Sphinx-7.4.7 alabaster-0.7.16 babel-2.18.0 certifi-2026.1.4 charset-normalizer-3.4.4 docutils-0.21.2 idna-3.11 imagesize-1.4.1 importlib-metadata-8.7.1 packaging-26.0 requests-2.32.5 snowballstemmer-3.0.1 sphinx-rtd-theme-3.1.0 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 tomli-2.4.0 urllib3-2.6.3 zipp-3.23.0 #13 DONE 10.5s #14 [10/14] RUN pip install -r ome-model/requirements.txt #14 1.409 Collecting Genshi