Started by upstream project "Trigger" build number 260 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-linkcheck [BIOFORMATS-linkcheck] $ /bin/bash -xe /tmp/jenkins1837588071945908240.sh + TAG=snoopycrimecop/bioformats:merge_ci + sudo docker run --rm -w /bio-formats-build/bio-formats-documentation --entrypoint mvn snoopycrimecop/bioformats:merge_ci test -DskipSphinxTests=false -Dome-model.uri=/bio-formats-build/ome-model/docs/sphinx/target/sphinx/html [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.codehaus.mojo:exec-maven-plugin @ line 369, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [WARNING] The project ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [INFO] [INFO] -------------------< ome:bio-formats-documentation >-------------------- [INFO] Building Bio-Formats documentation 8.1.0-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-configuration) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 116 resources [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:parse-version (parse-version) @ bio-formats-documentation --- [INFO] [INFO] --- maven-dependency-plugin:3.1.1:unpack (unpack-ome-xml) @ bio-formats-documentation --- [INFO] Configured Artifact: org.openmicroscopy:ome-xml:6.3.7-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-api:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-bsd:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-gpl:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:bio-formats-examples:sources:8.1.0-SNAPSHOT:jar [INFO] Unpacking /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-gpl with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/bio-formats-examples/8.1.0-SNAPSHOT/bio-formats-examples-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes "" [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 10 resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-documentation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (gen-meta-support) @ bio-formats-documentation --- Parsing AFIReader Parsing AIMReader Parsing AliconaReader Parsing AmiraReader Parsing AnalyzeReader Parsing APLReader Parsing ARFReader Parsing BaseZeissReader Parsing BDReader Parsing BioRadGelReader Parsing BioRadReader Parsing BioRadSCNReader Parsing BrukerReader Parsing BurleighReader Parsing CanonRawReader Parsing CellomicsReader Parsing CellSensReader Parsing CellVoyagerReader Parsing CellWorxReader Parsing ColumbusReader Parsing CV7000Reader Parsing DeltavisionReader Parsing DNGReader Parsing Ecat7Reader Parsing FEIReader Parsing FEITiffReader Parsing FlexReader Parsing FluoviewReader Parsing FujiReader Parsing FV1000Reader Parsing GatanDM2Reader Parsing GatanReader Parsing GelReader Parsing HamamatsuVMSReader Parsing HISReader Parsing HitachiReader Parsing HRDGDFReader Parsing I2IReader Parsing ImaconReader Parsing ImagicReader Parsing ImarisHDFReader Parsing ImarisReader Parsing ImarisTiffReader Parsing IMODReader Parsing ImprovisionTiffReader Parsing ImspectorReader Parsing InCell3000Reader Parsing InCellReader Parsing INRReader Parsing InveonReader Parsing IonpathMIBITiffReader Parsing IPLabReader Parsing IPWReader Parsing IvisionReader Parsing JEOLReader Parsing JPKReader Parsing JPXReader Parsing KhorosReader Parsing KodakReader Parsing L2DReader Parsing LeicaReader Parsing LeicaSCNReader Parsing LEOReader Parsing LiFlimReader Parsing LIFReader Parsing LIMReader Parsing LOFReader Parsing MetamorphReader Parsing MetamorphTiffReader Parsing MetaxpressTiffReader Parsing MIASReader Parsing MicroCTReader Parsing MikroscanTiffReader Parsing MINCReader Parsing MolecularImagingReader Parsing MRCReader Parsing MRWReader Parsing NAFReader Parsing ND2Reader Parsing NDPIReader Parsing NDPISReader Parsing NiftiReader Parsing NikonElementsTiffReader Parsing NikonReader Parsing NikonTiffReader Parsing OIRReader Parsing OlympusTileReader Parsing OpenlabRawReader Parsing OpenlabReader Parsing OperettaReader Parsing OxfordInstrumentsReader Parsing PCIReader Parsing PCORAWReader Parsing PDSReader Parsing PerkinElmerReader Parsing PhotoshopTiffReader Parsing PovrayReader Parsing PQBinReader Parsing PrairieReader Parsing PSDReader Parsing PyramidTiffReader Parsing QuesantReader Parsing RCPNLReader Parsing RHKReader Parsing SBIGReader Parsing ScanrReader Parsing SDTReader Parsing SeikoReader Parsing SEQReader Parsing SIFReader Parsing SimplePCITiffReader Parsing SISReader Parsing SlidebookReader Parsing SlidebookTiffReader Parsing SMCameraReader Parsing SPCReader Parsing SPEReader Parsing SpiderReader Parsing SVSReader Parsing TargaReader Parsing TCSReader Parsing TecanReader Parsing TillVisionReader Parsing TopometrixReader Parsing TrestleReader Parsing UBMReader Parsing UnisokuReader Parsing VarianFDFReader Parsing VectraReader Parsing VeecoReader Parsing VentanaReader Parsing VGSAMReader Parsing VisitechReader Parsing VolocityClippingReader Parsing VolocityReader Parsing WATOPReader Parsing XLEFReader Parsing ZeissCZIReader Parsing ZeissLMSReader Parsing ZeissLSMReader Parsing ZeissTIFFReader Parsing ZeissZVIReader Parsing APNGReader Parsing AVIReader Parsing BaseTiffReader Parsing BDVReader Parsing BIFormatReader Parsing BMPReader Parsing CellH5Reader Parsing DicomReader Parsing EPSReader Parsing FakeReader Parsing FilePatternReader Parsing FitsReader Parsing FlowSightReader Parsing GIFReader Parsing ICSReader Parsing IM3Reader Parsing ImageIOReader Parsing JPEG2000Reader Parsing JPEGReader Parsing KLBReader Parsing MicromanagerReader Parsing MinimalTiffReader Parsing MNGReader Parsing NRRDReader Parsing OBFReader Parsing OMETiffReader Parsing OMEXMLReader Parsing PCXReader Parsing PGMReader Parsing PictReader Parsing QTReader Parsing SlideBook7Reader Parsing TextReader Parsing TiffDelegateReader Parsing TiffJAIReader Parsing TiffReader Parsing TileJPEGReader Parsing ZipReader [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-structure-table) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-ratings) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-format-pages) @ bio-formats-documentation --- Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/3i-slidebook.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/3i-slidebook-7.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/photoshop-psd.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/aim.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/alicona-3d.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/amnis-flowsight.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/amersham-biosciences-gel.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/amira-mesh.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/analyze-75.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/abd-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/andor-sif.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/animated-png.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/aperio-afi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/aperio-svs-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/applied-precision-cellworx.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/avi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/axon-raw-format.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bd-pathway.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/becker-hickl-fifo.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/becker-hickl-spcimage.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/big-data-viewer.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bio-rad-gel.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bio-rad-pic.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bio-rad-scn.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bitplane-imaris.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/bruker-mri.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/burleigh.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/canon-dng.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/cellh5.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/cellomics.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/cellsens-vsi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/cellvoyager.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/cv7000.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/deltavision.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/dicom.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ecat7.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/eps.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/evotecperkinelmer-opera-flex.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/fei-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/fei.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/fits.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/gatan-digital-micrograph-2.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/gatan-digital-micrograph.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ge-microct.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/gif.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/hamamatsu-aquacosmos-naf.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/hamamatsu-his.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/hamamatsu-ndpi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/hamamatsu-vms.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/hitachi-s-4800.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/i2i.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ics.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imacon.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imagepro-sequence.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imagepro-workspace.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imagic.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imod.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/improvision-openlab-liff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/improvision-openlab-raw.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/improvision-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/imspector-obf.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/incell-1000.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/incell-3000.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/inr.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/inveon.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ionpath-mibi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/iplab-mac.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/iplab.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/jeol.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/jpeg-2000.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/jpeg.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/jpk.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/jpx.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/keller-lab-block.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/khoros-viff-bitmap.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/kodak-bip.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/lambert-instruments-flim.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leica-lif.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leica-lof.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leica-xlef.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/lavision-imspector.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leica-lcs-lei.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leica-scn.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/leo.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/li-cor-l2d.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/lim.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/metamorph-75-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/metamorph-stack-stk.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/metaxpress.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/mias-maia-scientific.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/micro-manager.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/mikroscan-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/minc-mri.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/minolta-mrw.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/mng.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/molecular-imaging.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/mrc.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nef.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nifti.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nikon-elements-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nikon-ez-c1-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nikon-nis-elements-nd2.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/nrrd.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-cellrapl.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-fluoview-fv1000.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-fluoview-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-oir.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-omp2info.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-scanr.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/olympus-sis-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/omero-pyramid.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ome-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ome-xml.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/oxford-instruments.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/pcx-pc-paintbrush.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/pcoraw.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/picoquant-bin.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/perkinelmer-columbus.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/perkin-elmer-densitometer.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/perkinelmer-nuance.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/perkinelmer-operetta.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/perkinelmer-ultraview.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/pgm.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/photoshop-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/pict-macintosh-picture.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/png.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/prairie-tech-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/princeton-instruments-spe.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/quesant.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/quicktime-movie.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/rhk.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/sbig.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/seiko.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/simplepci-hcimage-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/simplepci-hcimage.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/sm-camera.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/spider.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/targa.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/tecan-spark-cyto-workspace.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/text.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/tillphotonics-tillvision.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/topometrix.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/trestle.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ubm.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/unisoku.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/varian-fdf.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/vectra-qptiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/veeco-afm.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/ventana-bif.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/vg-sam.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/visitech-xys.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/volocity-library-clipping.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/volocity.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/wa-top.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/windows-bitmap.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/zeiss-axio-csm.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/zeiss-axiovision-tiff.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/zeiss-axiovision-zvi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/zeiss-czi.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/zeiss-lsm.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/supported-formats.rst: done. [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-summary) @ bio-formats-documentation --- Parsing configuration data Arc BooleanAnnotation Channel CommentAnnotation Dataset Detector DetectorSettings Dichroic DoubleAnnotation Ellipse Experiment Experimenter ExperimenterGroup Filament FileAnnotation Filter FilterSet Folder Image ImagingEnvironment Instrument Label Laser LightEmittingDiode LightPath Line ListAnnotation LongAnnotation Mask MicrobeamManipulation MicrobeamManipulationLightSourceSettings Microscope Objective ObjectiveSettings Pixels Plane Plate PlateAcquisition Point Polygon Polyline Project ROI Reagent Rectangle Screen StageLabel TagAnnotation TermAnnotation TiffData TimestampAnnotation TransmittanceRange UUID Well WellSample XMLAnnotation Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata-summary.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AFIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AIMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/APLReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/APNGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ARFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AVIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AliconaReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AmiraReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/AnalyzeReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BDReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BDVReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BIFormatReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BMPReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BaseTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BaseZeissReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BioRadGelReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BioRadReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BioRadSCNReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BrukerReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/BurleighReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CV7000Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CanonRawReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CellH5Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CellSensReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CellVoyagerReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CellWorxReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/CellomicsReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ColumbusReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/DNGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/DeltavisionReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/DicomReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/EPSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/Ecat7Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FEIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FEITiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FV1000Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FakeReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FilePatternReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FitsReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FlexReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FlowSightReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FluoviewReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/FujiReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/GIFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/GatanDM2Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/GatanReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/GelReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/HISReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/HRDGDFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/HamamatsuVMSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/HitachiReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/I2IReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ICSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IM3Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IMODReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/INRReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IPLabReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IPWReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImaconReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImageIOReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImagicReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImarisHDFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImarisReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImarisTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImprovisionTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ImspectorReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/InCell3000Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/InCellReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/InveonReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IonpathMIBITiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IvisionReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/JEOLReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/JPEG2000Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/JPEGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/JPKReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/JPXReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/KLBReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/KhorosReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/KodakReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/L2DReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LEOReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LIFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LIMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LOFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LeicaReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LeicaSCNReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/LiFlimReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MIASReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MINCReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MNGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MRCReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MRWReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MetamorphReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MetamorphTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MetaxpressTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MicroCTReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MicromanagerReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MikroscanTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MinimalTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/MolecularImagingReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NAFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ND2Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NDPIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NDPISReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NRRDReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NiftiReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonElementsTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OBFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OIRReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OMETiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OMEXMLReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OlympusTileReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OpenlabRawReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OpenlabReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OperettaReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OxfordInstrumentsReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCORAWReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCXReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PDSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PGMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PQBinReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PSDReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PerkinElmerReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PhotoshopTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PictReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PovrayReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PrairieReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PyramidTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/QTReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/QuesantReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/RCPNLReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/RHKReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SBIGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SDTReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SEQReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SIFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SISReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SMCameraReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SPCReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SPEReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SVSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ScanrReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SeikoReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SimplePCITiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SlideBook7Reader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SlidebookReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SlidebookTiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/SpiderReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TCSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TargaReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TecanReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TextReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TiffDelegateReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TiffJAIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TiffReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TileJPEGReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TillVisionReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TopometrixReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/TrestleReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/UBMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/UnisokuReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VGSAMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VarianFDFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VectraReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VeecoReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VentanaReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VisitechReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VolocityClippingReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/VolocityReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/WATOPReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/XLEFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissCZIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissLMSReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissLSMReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissTIFFReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissZVIReader.rst: done. Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZipReader.rst: done. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /bio-formats-build/bio-formats-documentation/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats-documentation --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats-documentation --- [INFO] No tests to run. [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) @ bio-formats-documentation --- Running Sphinx v7.4.7 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading pickled environment... done /bio-formats-build/venv/lib/python3.9/site-packages/sphinx/builders/linkcheck.py:86: RemovedInSphinx80Warning: The default value for 'linkcheck_report_timeouts_as_broken' will change to False in Sphinx 8, meaning that request timeouts will be reported with a new 'timeout' status, instead of as 'broken'. This is intended to provide more detail as to the failure mode. See https://github.com/sphinx-doc/sphinx/issues/11868 for details. warnings.warn(deprecation_msg, RemovedInSphinx80Warning, stacklevel=1) building [mo]: targets for 0 po files that are out of date writing output... building [linkcheck]: targets for 425 source files that are out of date updating environment: 0 added, 344 changed, 0 removed reading sources... [ 0%] formats/3i-slidebook reading sources... [ 1%] formats/3i-slidebook-7 reading sources... [ 1%] formats/abd-tiff reading sources... [ 1%] formats/aim reading sources... [ 1%] formats/alicona-3d reading sources... [ 2%] formats/amersham-biosciences-gel reading sources... [ 2%] formats/amira-mesh reading sources... [ 2%] formats/amnis-flowsight reading sources... [ 3%] formats/analyze-75 reading sources... [ 3%] formats/andor-sif reading sources... [ 3%] formats/animated-png reading sources... [ 3%] formats/aperio-afi reading sources... [ 4%] formats/aperio-svs-tiff reading sources... [ 4%] formats/applied-precision-cellworx reading sources... [ 4%] formats/avi reading sources... [ 5%] formats/axon-raw-format reading sources... [ 5%] formats/bd-pathway reading sources... [ 5%] formats/becker-hickl-fifo reading sources... [ 6%] formats/becker-hickl-spcimage reading sources... [ 6%] formats/big-data-viewer reading sources... [ 6%] formats/bio-rad-gel reading sources... [ 6%] formats/bio-rad-pic reading sources... [ 7%] formats/bio-rad-scn reading sources... [ 7%] formats/bitplane-imaris reading sources... [ 7%] formats/bruker-mri reading sources... [ 8%] formats/burleigh reading sources... [ 8%] formats/canon-dng reading sources... [ 8%] formats/cellh5 reading sources... [ 8%] formats/cellomics reading sources... [ 9%] formats/cellsens-vsi reading sources... [ 9%] formats/cellvoyager reading sources... [ 9%] formats/cv7000 reading sources... [ 10%] formats/dataset-table reading sources... [ 10%] formats/deltavision reading sources... [ 10%] formats/dicom reading sources... [ 10%] formats/ecat7 reading sources... [ 11%] formats/eps reading sources... [ 11%] formats/evotecperkinelmer-opera-flex reading sources... [ 11%] formats/fei reading sources... [ 12%] formats/fei-tiff reading sources... [ 12%] formats/fits reading sources... [ 12%] formats/gatan-digital-micrograph reading sources... [ 12%] formats/gatan-digital-micrograph-2 reading sources... [ 13%] formats/ge-microct reading sources... [ 13%] formats/gif reading sources... [ 13%] formats/hamamatsu-aquacosmos-naf reading sources... [ 14%] formats/hamamatsu-his reading sources... [ 14%] formats/hamamatsu-ndpi reading sources... [ 14%] formats/hamamatsu-vms reading sources... [ 15%] formats/hitachi-s-4800 reading sources... [ 15%] formats/i2i reading sources... [ 15%] formats/ics reading sources... [ 15%] formats/imacon reading sources... [ 16%] formats/imagepro-sequence reading sources... [ 16%] formats/imagepro-workspace reading sources... [ 16%] formats/imagic reading sources... [ 17%] formats/imod reading sources... [ 17%] formats/improvision-openlab-liff reading sources... [ 17%] formats/improvision-openlab-raw reading sources... [ 17%] formats/improvision-tiff reading sources... [ 18%] formats/imspector-obf reading sources... [ 18%] formats/incell-1000 reading sources... [ 18%] formats/incell-3000 reading sources... [ 19%] formats/inr reading sources... [ 19%] formats/inveon reading sources... [ 19%] formats/ionpath-mibi reading sources... [ 19%] formats/iplab reading sources... [ 20%] formats/iplab-mac reading sources... [ 20%] formats/jeol reading sources... [ 20%] formats/jpeg reading sources... [ 21%] formats/jpeg-2000 reading sources... [ 21%] formats/jpk reading sources... [ 21%] formats/jpx reading sources... [ 22%] formats/keller-lab-block reading sources... [ 22%] formats/khoros-viff-bitmap reading sources... [ 22%] formats/kodak-bip reading sources... [ 22%] formats/lambert-instruments-flim reading sources... [ 23%] formats/lavision-imspector reading sources... [ 23%] formats/leica-lcs-lei reading sources... [ 23%] formats/leica-lif reading sources... [ 24%] formats/leica-lof reading sources... [ 24%] formats/leica-scn reading sources... [ 24%] formats/leica-xlef reading sources... [ 24%] formats/leo reading sources... [ 25%] formats/li-cor-l2d reading sources... [ 25%] formats/lim reading sources... [ 25%] formats/metamorph-75-tiff reading sources... [ 26%] formats/metamorph-stack-stk reading sources... [ 26%] formats/metaxpress reading sources... [ 26%] formats/mias-maia-scientific reading sources... [ 26%] formats/micro-manager reading sources... [ 27%] formats/mikroscan-tiff reading sources... [ 27%] formats/minc-mri reading sources... [ 27%] formats/minolta-mrw reading sources... [ 28%] formats/mng reading sources... [ 28%] formats/molecular-imaging reading sources... [ 28%] formats/mrc reading sources... [ 28%] formats/nef reading sources... [ 29%] formats/nifti reading sources... [ 29%] formats/nikon-elements-tiff reading sources... [ 29%] formats/nikon-ez-c1-tiff reading sources... [ 30%] formats/nikon-nis-elements-nd2 reading sources... [ 30%] formats/nrrd reading sources... [ 30%] formats/olympus-cellrapl reading sources... [ 31%] formats/olympus-fluoview-fv1000 reading sources... [ 31%] formats/olympus-fluoview-tiff reading sources... [ 31%] formats/olympus-oir reading sources... [ 31%] formats/olympus-omp2info reading sources... [ 32%] formats/olympus-scanr reading sources... [ 32%] formats/olympus-sis-tiff reading sources... [ 32%] formats/ome-tiff reading sources... [ 33%] formats/ome-xml reading sources... [ 33%] formats/omero-pyramid reading sources... [ 33%] formats/oxford-instruments reading sources... [ 33%] formats/pcoraw reading sources... [ 34%] formats/pcx-pc-paintbrush reading sources... [ 34%] formats/perkin-elmer-densitometer reading sources... [ 34%] formats/perkinelmer-columbus reading sources... [ 35%] formats/perkinelmer-nuance reading sources... [ 35%] formats/perkinelmer-operetta reading sources... [ 35%] formats/perkinelmer-ultraview reading sources... [ 35%] formats/pgm reading sources... [ 36%] formats/photoshop-psd reading sources... [ 36%] formats/photoshop-tiff reading sources... [ 36%] formats/picoquant-bin reading sources... [ 37%] formats/pict-macintosh-picture reading sources... [ 37%] formats/png reading sources... [ 37%] formats/prairie-tech-tiff reading sources... [ 38%] formats/princeton-instruments-spe reading sources... [ 38%] formats/quesant reading sources... [ 38%] formats/quicktime-movie reading sources... [ 38%] formats/rhk reading sources... [ 39%] formats/sbig reading sources... [ 39%] formats/seiko reading sources... [ 39%] formats/simplepci-hcimage reading sources... [ 40%] formats/simplepci-hcimage-tiff reading sources... [ 40%] formats/sm-camera reading sources... [ 40%] formats/spider reading sources... [ 40%] formats/targa reading sources... [ 41%] formats/tecan-spark-cyto-workspace reading sources... [ 41%] formats/text reading sources... [ 41%] formats/tiff reading sources... [ 42%] formats/tillphotonics-tillvision reading sources... [ 42%] formats/topometrix reading sources... [ 42%] formats/trestle reading sources... [ 42%] formats/ubm reading sources... [ 43%] formats/unisoku reading sources... [ 43%] formats/varian-fdf reading sources... [ 43%] formats/vectra-qptiff reading sources... [ 44%] formats/veeco-afm reading sources... [ 44%] formats/ventana-bif reading sources... [ 44%] formats/vg-sam reading sources... [ 44%] formats/visitech-xys reading sources... [ 45%] formats/volocity reading sources... [ 45%] formats/volocity-library-clipping reading sources... [ 45%] formats/wa-top reading sources... [ 46%] formats/windows-bitmap reading sources... [ 46%] formats/zeiss-axio-csm reading sources... [ 46%] formats/zeiss-axiovision-tiff reading sources... [ 47%] formats/zeiss-axiovision-zvi reading sources... [ 47%] formats/zeiss-czi reading sources... [ 47%] formats/zeiss-lsm reading sources... [ 47%] metadata-summary reading sources... [ 48%] metadata/AFIReader reading sources... [ 48%] metadata/AIMReader reading sources... [ 48%] metadata/APLReader reading sources... [ 49%] metadata/APNGReader reading sources... [ 49%] metadata/ARFReader reading sources... [ 49%] metadata/AVIReader reading sources... [ 49%] metadata/AliconaReader reading sources... [ 50%] metadata/AmiraReader reading sources... [ 50%] metadata/AnalyzeReader reading sources... [ 50%] metadata/BDReader reading sources... [ 51%] metadata/BDVReader reading sources... [ 51%] metadata/BIFormatReader reading sources... [ 51%] metadata/BMPReader reading sources... [ 51%] metadata/BaseTiffReader reading sources... [ 52%] metadata/BaseZeissReader reading sources... [ 52%] metadata/BioRadGelReader reading sources... [ 52%] metadata/BioRadReader reading sources... [ 53%] metadata/BioRadSCNReader reading sources... [ 53%] metadata/BrukerReader reading sources... [ 53%] metadata/BurleighReader reading sources... [ 53%] metadata/CV7000Reader reading sources... [ 54%] metadata/CanonRawReader reading sources... [ 54%] metadata/CellH5Reader reading sources... [ 54%] metadata/CellSensReader reading sources... [ 55%] metadata/CellVoyagerReader reading sources... [ 55%] metadata/CellWorxReader reading sources... [ 55%] metadata/CellomicsReader reading sources... [ 56%] metadata/ColumbusReader reading sources... [ 56%] metadata/DNGReader reading sources... [ 56%] metadata/DeltavisionReader reading sources... [ 56%] metadata/DicomReader reading sources... [ 57%] metadata/EPSReader reading sources... [ 57%] metadata/Ecat7Reader reading sources... [ 57%] metadata/FEIReader reading sources... [ 58%] metadata/FEITiffReader reading sources... [ 58%] metadata/FV1000Reader reading sources... [ 58%] metadata/FakeReader reading sources... [ 58%] metadata/FilePatternReader reading sources... [ 59%] metadata/FitsReader reading sources... [ 59%] metadata/FlexReader reading sources... [ 59%] metadata/FlowSightReader reading sources... [ 60%] metadata/FluoviewReader reading sources... [ 60%] metadata/FujiReader reading sources... [ 60%] metadata/GIFReader reading sources... [ 60%] metadata/GatanDM2Reader reading sources... [ 61%] metadata/GatanReader reading sources... [ 61%] metadata/GelReader reading sources... [ 61%] metadata/HISReader reading sources... [ 62%] metadata/HRDGDFReader reading sources... [ 62%] metadata/HamamatsuVMSReader reading sources... [ 62%] metadata/HitachiReader reading sources... [ 62%] metadata/I2IReader reading sources... [ 63%] metadata/ICSReader reading sources... [ 63%] metadata/IM3Reader reading sources... [ 63%] metadata/IMODReader reading sources... [ 64%] metadata/INRReader reading sources... [ 64%] metadata/IPLabReader reading sources... [ 64%] metadata/IPWReader reading sources... [ 65%] metadata/ImaconReader reading sources... [ 65%] metadata/ImageIOReader reading sources... [ 65%] metadata/ImagicReader reading sources... [ 65%] metadata/ImarisHDFReader reading sources... [ 66%] metadata/ImarisReader reading sources... [ 66%] metadata/ImarisTiffReader reading sources... [ 66%] metadata/ImprovisionTiffReader reading sources... [ 67%] metadata/ImspectorReader reading sources... [ 67%] metadata/InCell3000Reader reading sources... [ 67%] metadata/InCellReader reading sources... [ 67%] metadata/InveonReader reading sources... [ 68%] metadata/IonpathMIBITiffReader reading sources... [ 68%] metadata/IvisionReader reading sources... [ 68%] metadata/JEOLReader reading sources... [ 69%] metadata/JPEG2000Reader reading sources... [ 69%] metadata/JPEGReader reading sources... [ 69%] metadata/JPKReader reading sources... [ 69%] metadata/JPXReader reading sources... [ 70%] metadata/KLBReader reading sources... [ 70%] metadata/KhorosReader reading sources... [ 70%] metadata/KodakReader reading sources... [ 71%] metadata/L2DReader reading sources... [ 71%] metadata/LEOReader reading sources... [ 71%] metadata/LIFReader reading sources... [ 72%] metadata/LIMReader reading sources... [ 72%] metadata/LOFReader reading sources... [ 72%] metadata/LeicaReader reading sources... [ 72%] metadata/LeicaSCNReader reading sources... [ 73%] metadata/LiFlimReader reading sources... [ 73%] metadata/MIASReader reading sources... [ 73%] metadata/MINCReader reading sources... [ 74%] metadata/MNGReader reading sources... [ 74%] metadata/MRCReader reading sources... [ 74%] metadata/MRWReader reading sources... [ 74%] metadata/MetamorphReader reading sources... [ 75%] metadata/MetamorphTiffReader reading sources... [ 75%] metadata/MetaxpressTiffReader reading sources... [ 75%] metadata/MicroCTReader reading sources... [ 76%] metadata/MicromanagerReader reading sources... [ 76%] metadata/MikroscanTiffReader reading sources... [ 76%] metadata/MinimalTiffReader reading sources... [ 76%] metadata/MolecularImagingReader reading sources... [ 77%] metadata/NAFReader reading sources... [ 77%] metadata/ND2Reader reading sources... [ 77%] metadata/NDPIReader reading sources... [ 78%] metadata/NDPISReader reading sources... [ 78%] metadata/NRRDReader reading sources... [ 78%] metadata/NiftiReader reading sources... [ 78%] metadata/NikonElementsTiffReader reading sources... [ 79%] metadata/NikonReader reading sources... [ 79%] metadata/NikonTiffReader reading sources... [ 79%] metadata/OBFReader reading sources... [ 80%] metadata/OIRReader reading sources... [ 80%] metadata/OMETiffReader reading sources... [ 80%] metadata/OMEXMLReader reading sources... [ 81%] metadata/OlympusTileReader reading sources... [ 81%] metadata/OpenlabRawReader reading sources... [ 81%] metadata/OpenlabReader reading sources... [ 81%] metadata/OperettaReader reading sources... [ 82%] metadata/OxfordInstrumentsReader reading sources... [ 82%] metadata/PCIReader reading sources... [ 82%] metadata/PCORAWReader reading sources... [ 83%] metadata/PCXReader reading sources... [ 83%] metadata/PDSReader reading sources... [ 83%] metadata/PGMReader reading sources... [ 83%] metadata/PQBinReader reading sources... [ 84%] metadata/PSDReader reading sources... [ 84%] metadata/PerkinElmerReader reading sources... [ 84%] metadata/PhotoshopTiffReader reading sources... [ 85%] metadata/PictReader reading sources... [ 85%] metadata/PovrayReader reading sources... [ 85%] metadata/PrairieReader reading sources... [ 85%] metadata/PyramidTiffReader reading sources... [ 86%] metadata/QTReader reading sources... [ 86%] metadata/QuesantReader reading sources... [ 86%] metadata/RCPNLReader reading sources... [ 87%] metadata/RHKReader reading sources... [ 87%] metadata/SBIGReader reading sources... [ 87%] metadata/SDTReader reading sources... [ 88%] metadata/SEQReader reading sources... [ 88%] metadata/SIFReader reading sources... [ 88%] metadata/SISReader reading sources... [ 88%] metadata/SMCameraReader reading sources... [ 89%] metadata/SPCReader reading sources... [ 89%] metadata/SPEReader reading sources... [ 89%] metadata/SVSReader reading sources... [ 90%] metadata/ScanrReader reading sources... [ 90%] metadata/SeikoReader reading sources... [ 90%] metadata/SimplePCITiffReader reading sources... [ 90%] metadata/SlideBook7Reader reading sources... [ 91%] metadata/SlidebookReader reading sources... [ 91%] metadata/SlidebookTiffReader reading sources... [ 91%] metadata/SpiderReader reading sources... [ 92%] metadata/TCSReader reading sources... [ 92%] metadata/TargaReader reading sources... [ 92%] metadata/TecanReader reading sources... [ 92%] metadata/TextReader reading sources... [ 93%] metadata/TiffDelegateReader reading sources... [ 93%] metadata/TiffJAIReader reading sources... [ 93%] metadata/TiffReader reading sources... [ 94%] metadata/TileJPEGReader reading sources... [ 94%] metadata/TillVisionReader reading sources... [ 94%] metadata/TopometrixReader reading sources... [ 94%] metadata/TrestleReader reading sources... [ 95%] metadata/UBMReader reading sources... [ 95%] metadata/UnisokuReader reading sources... [ 95%] metadata/VGSAMReader reading sources... [ 96%] metadata/VarianFDFReader reading sources... [ 96%] metadata/VectraReader reading sources... [ 96%] metadata/VeecoReader reading sources... [ 97%] metadata/VentanaReader reading sources... [ 97%] metadata/VisitechReader reading sources... [ 97%] metadata/VolocityClippingReader reading sources... [ 97%] metadata/VolocityReader reading sources... [ 98%] metadata/WATOPReader reading sources... [ 98%] metadata/XLEFReader reading sources... [ 98%] metadata/ZeissCZIReader reading sources... [ 99%] metadata/ZeissLMSReader reading sources... [ 99%] metadata/ZeissLSMReader reading sources... [ 99%] metadata/ZeissTIFFReader reading sources... [ 99%] metadata/ZeissZVIReader reading sources... [100%] metadata/ZipReader reading sources... [100%] supported-formats looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying assets: done writing output... [ 0%] about/bug-reporting writing output... [ 0%] about/index writing output... [ 1%] about/whats-new writing output... [ 1%] developers/building-bioformats writing output... [ 1%] developers/code-formatting writing output... [ 1%] developers/commit-testing writing output... [ 2%] developers/components writing output... [ 2%] developers/conversion writing output... [ 2%] developers/dotnet-dev writing output... [ 2%] developers/export writing output... [ 3%] developers/export2 writing output... [ 3%] developers/file-reader writing output... [ 3%] developers/file-writer writing output... [ 3%] developers/format-documentation writing output... [ 4%] developers/generating-test-images writing output... [ 4%] developers/in-memory writing output... [ 4%] developers/index writing output... [ 4%] developers/java-library writing output... [ 4%] developers/logging writing output... [ 5%] developers/matlab-dev writing output... [ 5%] developers/non-java-code writing output... [ 5%] developers/overview writing output... [ 5%] developers/python-dev writing output... [ 6%] developers/r-dev writing output... [ 6%] developers/reader-guide writing output... [ 6%] developers/service writing output... [ 6%] developers/tiling writing output... [ 7%] developers/units writing output... [ 7%] developers/useful-scripts writing output... [ 7%] developers/wsi writing output... [ 7%] formats/3i-slidebook writing output... [ 8%] formats/3i-slidebook-7 writing output... [ 8%] formats/abd-tiff writing output... [ 8%] formats/aim writing output... [ 8%] formats/alicona-3d writing output... [ 8%] formats/amersham-biosciences-gel writing output... [ 9%] formats/amira-mesh writing output... [ 9%] formats/amnis-flowsight writing output... [ 9%] formats/analyze-75 writing output... [ 9%] formats/andor-sif writing output... [ 10%] formats/animated-png writing output... [ 10%] formats/aperio-afi writing output... [ 10%] formats/aperio-svs-tiff writing output... [ 10%] formats/applied-precision-cellworx writing output... [ 11%] formats/avi writing output... [ 11%] formats/axon-raw-format writing output... [ 11%] formats/bd-pathway writing output... [ 11%] formats/becker-hickl-fifo writing output... [ 12%] formats/becker-hickl-spcimage writing output... [ 12%] formats/big-data-viewer writing output... [ 12%] formats/bio-rad-gel writing output... [ 12%] formats/bio-rad-pic writing output... [ 12%] formats/bio-rad-scn writing output... [ 13%] formats/bitplane-imaris writing output... [ 13%] formats/bruker-mri writing output... [ 13%] formats/burleigh writing output... [ 13%] formats/canon-dng writing output... [ 14%] formats/cellh5 writing output... [ 14%] formats/cellomics writing output... [ 14%] formats/cellsens-vsi writing output... [ 14%] formats/cellvoyager writing output... [ 15%] formats/cv7000 writing output... [ 15%] formats/dataset-table writing output... [ 15%] formats/deltavision writing output... [ 15%] formats/dicom writing output... [ 16%] formats/ecat7 writing output... [ 16%] formats/eps writing output... [ 16%] formats/evotecperkinelmer-opera-flex writing output... [ 16%] formats/fei writing output... [ 16%] formats/fei-tiff writing output... [ 17%] formats/fits writing output... [ 17%] formats/gatan-digital-micrograph writing output... [ 17%] formats/gatan-digital-micrograph-2 writing output... [ 17%] formats/ge-microct writing output... [ 18%] formats/gif writing output... [ 18%] formats/hamamatsu-aquacosmos-naf writing output... [ 18%] formats/hamamatsu-his writing output... [ 18%] formats/hamamatsu-ndpi writing output... [ 19%] formats/hamamatsu-vms writing output... [ 19%] formats/hitachi-s-4800 writing output... [ 19%] formats/i2i writing output... [ 19%] formats/ics writing output... [ 20%] formats/imacon writing output... [ 20%] formats/imagepro-sequence writing output... [ 20%] formats/imagepro-workspace writing output... [ 20%] formats/imagic writing output... [ 20%] formats/imod writing output... [ 21%] formats/improvision-openlab-liff writing output... [ 21%] formats/improvision-openlab-raw writing output... [ 21%] formats/improvision-tiff writing output... [ 21%] formats/imspector-obf writing output... [ 22%] formats/incell-1000 writing output... [ 22%] formats/incell-3000 writing output... [ 22%] formats/index writing output... [ 22%] formats/inr writing output... [ 23%] formats/inveon writing output... [ 23%] formats/ionpath-mibi writing output... [ 23%] formats/iplab writing output... [ 23%] formats/iplab-mac writing output... [ 24%] formats/jeol writing output... [ 24%] formats/jpeg writing output... [ 24%] formats/jpeg-2000 writing output... [ 24%] formats/jpk writing output... [ 24%] formats/jpx writing output... [ 25%] formats/keller-lab-block writing output... [ 25%] formats/khoros-viff-bitmap writing output... [ 25%] formats/kodak-bip writing output... [ 25%] formats/lambert-instruments-flim writing output... [ 26%] formats/lavision-imspector writing output... [ 26%] formats/leica-lcs-lei writing output... [ 26%] formats/leica-lif writing output... [ 26%] formats/leica-lof writing output... [ 27%] formats/leica-scn writing output... [ 27%] formats/leica-xlef writing output... [ 27%] formats/leo writing output... [ 27%] formats/li-cor-l2d writing output... [ 28%] formats/lim writing output... [ 28%] formats/metamorph-75-tiff writing output... [ 28%] formats/metamorph-stack-stk writing output... [ 28%] formats/metaxpress writing output... [ 28%] formats/mias-maia-scientific writing output... [ 29%] formats/micro-manager writing output... [ 29%] formats/mikroscan-tiff writing output... [ 29%] formats/minc-mri writing output... [ 29%] formats/minolta-mrw writing output... [ 30%] formats/mng writing output... [ 30%] formats/molecular-imaging writing output... [ 30%] formats/mrc writing output... [ 30%] formats/nef writing output... [ 31%] formats/nifti writing output... [ 31%] formats/nikon-elements-tiff writing output... [ 31%] formats/nikon-ez-c1-tiff writing output... [ 31%] formats/nikon-nis-elements-nd2 writing output... [ 32%] formats/nrrd writing output... [ 32%] formats/olympus-cellrapl writing output... [ 32%] formats/olympus-fluoview-fv1000 writing output... [ 32%] formats/olympus-fluoview-tiff writing output... [ 32%] formats/olympus-oir writing output... [ 33%] formats/olympus-omp2info writing output... [ 33%] formats/olympus-scanr writing output... [ 33%] formats/olympus-sis-tiff writing output... [ 33%] formats/ome-tiff writing output... [ 34%] formats/ome-xml writing output... [ 34%] formats/omero-pyramid writing output... [ 34%] formats/options writing output... [ 34%] formats/oxford-instruments writing output... [ 35%] formats/pattern-file writing output... [ 35%] formats/pcoraw writing output... [ 35%] formats/pcx-pc-paintbrush writing output... [ 35%] formats/perkin-elmer-densitometer writing output... [ 36%] formats/perkinelmer-columbus writing output... [ 36%] formats/perkinelmer-nuance writing output... [ 36%] formats/perkinelmer-operetta writing output... [ 36%] formats/perkinelmer-ultraview writing output... [ 36%] formats/pgm writing output... [ 37%] formats/photoshop-psd writing output... [ 37%] formats/photoshop-tiff writing output... [ 37%] formats/picoquant-bin writing output... [ 37%] formats/pict-macintosh-picture writing output... [ 38%] formats/png writing output... [ 38%] formats/prairie-tech-tiff writing output... [ 38%] formats/precompressed writing output... [ 38%] formats/princeton-instruments-spe writing output... [ 39%] formats/quesant writing output... [ 39%] formats/quicktime-movie writing output... [ 39%] formats/rhk writing output... [ 39%] formats/sbig writing output... [ 40%] formats/seiko writing output... [ 40%] formats/simplepci-hcimage writing output... [ 40%] formats/simplepci-hcimage-tiff writing output... [ 40%] formats/sm-camera writing output... [ 40%] formats/spider writing output... [ 41%] formats/targa writing output... [ 41%] formats/tecan-spark-cyto-workspace writing output... [ 41%] formats/text writing output... [ 41%] formats/tiff writing output... [ 42%] formats/tillphotonics-tillvision writing output... [ 42%] formats/topometrix writing output... [ 42%] formats/trestle writing output... [ 42%] formats/ubm writing output... [ 43%] formats/unisoku writing output... [ 43%] formats/varian-fdf writing output... [ 43%] formats/vectra-qptiff writing output... [ 43%] formats/veeco-afm writing output... [ 44%] formats/ventana-bif writing output... [ 44%] formats/vg-sam writing output... [ 44%] formats/visitech-xys writing output... [ 44%] formats/volocity writing output... [ 44%] formats/volocity-library-clipping writing output... [ 45%] formats/wa-top writing output... [ 45%] formats/windows-bitmap writing output... [ 45%] formats/zeiss-axio-csm writing output... [ 45%] formats/zeiss-axiovision-tiff writing output... [ 46%] formats/zeiss-axiovision-zvi writing output... [ 46%] formats/zeiss-czi writing output... [ 46%] formats/zeiss-lsm writing output... [ 46%] index writing output... [ 47%] metadata-summary writing output... [ 47%] metadata/AFIReader writing output... [ 47%] metadata/AIMReader writing output... [ 47%] metadata/APLReader writing output... [ 48%] metadata/APNGReader writing output... [ 48%] metadata/ARFReader writing output... [ 48%] metadata/AVIReader writing output... [ 48%] metadata/AliconaReader writing output... [ 48%] metadata/AmiraReader writing output... [ 49%] metadata/AnalyzeReader writing output... [ 49%] metadata/BDReader writing output... [ 49%] metadata/BDVReader writing output... [ 49%] metadata/BIFormatReader writing output... [ 50%] metadata/BMPReader writing output... [ 50%] metadata/BaseTiffReader writing output... [ 50%] metadata/BaseZeissReader writing output... [ 50%] metadata/BioRadGelReader writing output... [ 51%] metadata/BioRadReader writing output... [ 51%] metadata/BioRadSCNReader writing output... [ 51%] metadata/BrukerReader writing output... [ 51%] metadata/BurleighReader writing output... [ 52%] metadata/CV7000Reader writing output... [ 52%] metadata/CanonRawReader writing output... [ 52%] metadata/CellH5Reader writing output... [ 52%] metadata/CellSensReader writing output... [ 52%] metadata/CellVoyagerReader writing output... [ 53%] metadata/CellWorxReader writing output... [ 53%] metadata/CellomicsReader writing output... [ 53%] metadata/ColumbusReader writing output... [ 53%] metadata/DNGReader writing output... [ 54%] metadata/DeltavisionReader writing output... [ 54%] metadata/DicomReader writing output... [ 54%] metadata/EPSReader writing output... [ 54%] metadata/Ecat7Reader writing output... [ 55%] metadata/FEIReader writing output... [ 55%] metadata/FEITiffReader writing output... [ 55%] metadata/FV1000Reader writing output... [ 55%] metadata/FakeReader writing output... [ 56%] metadata/FilePatternReader writing output... [ 56%] metadata/FitsReader writing output... [ 56%] metadata/FlexReader writing output... [ 56%] metadata/FlowSightReader writing output... [ 56%] metadata/FluoviewReader writing output... [ 57%] metadata/FujiReader writing output... [ 57%] metadata/GIFReader writing output... [ 57%] metadata/GatanDM2Reader writing output... [ 57%] metadata/GatanReader writing output... [ 58%] metadata/GelReader writing output... [ 58%] metadata/HISReader writing output... [ 58%] metadata/HRDGDFReader writing output... [ 58%] metadata/HamamatsuVMSReader writing output... [ 59%] metadata/HitachiReader writing output... [ 59%] metadata/I2IReader writing output... [ 59%] metadata/ICSReader writing output... [ 59%] metadata/IM3Reader writing output... [ 60%] metadata/IMODReader writing output... [ 60%] metadata/INRReader writing output... [ 60%] metadata/IPLabReader writing output... [ 60%] metadata/IPWReader writing output... [ 60%] metadata/ImaconReader writing output... [ 61%] metadata/ImageIOReader writing output... [ 61%] metadata/ImagicReader writing output... [ 61%] metadata/ImarisHDFReader writing output... [ 61%] metadata/ImarisReader writing output... [ 62%] metadata/ImarisTiffReader writing output... [ 62%] metadata/ImprovisionTiffReader writing output... [ 62%] metadata/ImspectorReader writing output... [ 62%] metadata/InCell3000Reader writing output... [ 63%] metadata/InCellReader writing output... [ 63%] metadata/InveonReader writing output... [ 63%] metadata/IonpathMIBITiffReader writing output... [ 63%] metadata/IvisionReader writing output... [ 64%] metadata/JEOLReader writing output... [ 64%] metadata/JPEG2000Reader writing output... [ 64%] metadata/JPEGReader writing output... [ 64%] metadata/JPKReader writing output... [ 64%] metadata/JPXReader writing output... [ 65%] metadata/KLBReader writing output... [ 65%] metadata/KhorosReader writing output... [ 65%] metadata/KodakReader writing output... [ 65%] metadata/L2DReader writing output... [ 66%] metadata/LEOReader writing output... [ 66%] metadata/LIFReader writing output... [ 66%] metadata/LIMReader writing output... [ 66%] metadata/LOFReader writing output... [ 67%] metadata/LeicaReader writing output... [ 67%] metadata/LeicaSCNReader writing output... [ 67%] metadata/LiFlimReader writing output... [ 67%] metadata/MIASReader writing output... [ 68%] metadata/MINCReader writing output... [ 68%] metadata/MNGReader writing output... [ 68%] metadata/MRCReader writing output... [ 68%] metadata/MRWReader writing output... [ 68%] metadata/MetamorphReader writing output... [ 69%] metadata/MetamorphTiffReader writing output... [ 69%] metadata/MetaxpressTiffReader writing output... [ 69%] metadata/MicroCTReader writing output... [ 69%] metadata/MicromanagerReader writing output... [ 70%] metadata/MikroscanTiffReader writing output... [ 70%] metadata/MinimalTiffReader writing output... [ 70%] metadata/MolecularImagingReader writing output... [ 70%] metadata/NAFReader writing output... [ 71%] metadata/ND2Reader writing output... [ 71%] metadata/NDPIReader writing output... [ 71%] metadata/NDPISReader writing output... [ 71%] metadata/NRRDReader writing output... [ 72%] metadata/NiftiReader writing output... [ 72%] metadata/NikonElementsTiffReader writing output... [ 72%] metadata/NikonReader writing output... [ 72%] metadata/NikonTiffReader writing output... [ 72%] metadata/OBFReader writing output... [ 73%] metadata/OIRReader writing output... [ 73%] metadata/OMETiffReader writing output... [ 73%] metadata/OMEXMLReader writing output... [ 73%] metadata/OlympusTileReader writing output... [ 74%] metadata/OpenlabRawReader writing output... [ 74%] metadata/OpenlabReader writing output... [ 74%] metadata/OperettaReader writing output... [ 74%] metadata/OxfordInstrumentsReader writing output... [ 75%] metadata/PCIReader writing output... [ 75%] metadata/PCORAWReader writing output... [ 75%] metadata/PCXReader writing output... [ 75%] metadata/PDSReader writing output... [ 76%] metadata/PGMReader writing output... [ 76%] metadata/PQBinReader writing output... [ 76%] metadata/PSDReader writing output... [ 76%] metadata/PerkinElmerReader writing output... [ 76%] metadata/PhotoshopTiffReader writing output... [ 77%] metadata/PictReader writing output... [ 77%] metadata/PovrayReader writing output... [ 77%] metadata/PrairieReader writing output... [ 77%] metadata/PyramidTiffReader writing output... [ 78%] metadata/QTReader writing output... [ 78%] metadata/QuesantReader writing output... [ 78%] metadata/RCPNLReader writing output... [ 78%] metadata/RHKReader writing output... [ 79%] metadata/SBIGReader writing output... [ 79%] metadata/SDTReader writing output... [ 79%] metadata/SEQReader writing output... [ 79%] metadata/SIFReader writing output... [ 80%] metadata/SISReader writing output... [ 80%] metadata/SMCameraReader writing output... [ 80%] metadata/SPCReader writing output... [ 80%] metadata/SPEReader writing output... [ 80%] metadata/SVSReader writing output... [ 81%] metadata/ScanrReader writing output... [ 81%] metadata/SeikoReader writing output... [ 81%] metadata/SimplePCITiffReader writing output... [ 81%] metadata/SlideBook7Reader writing output... [ 82%] metadata/SlidebookReader writing output... [ 82%] metadata/SlidebookTiffReader writing output... [ 82%] metadata/SpiderReader writing output... [ 82%] metadata/TCSReader writing output... [ 83%] metadata/TargaReader writing output... [ 83%] metadata/TecanReader writing output... [ 83%] metadata/TextReader writing output... [ 83%] metadata/TiffDelegateReader writing output... [ 84%] metadata/TiffJAIReader writing output... [ 84%] metadata/TiffReader writing output... [ 84%] metadata/TileJPEGReader writing output... [ 84%] metadata/TillVisionReader writing output... [ 84%] metadata/TopometrixReader writing output... [ 85%] metadata/TrestleReader writing output... [ 85%] metadata/UBMReader writing output... [ 85%] metadata/UnisokuReader writing output... [ 85%] metadata/VGSAMReader writing output... [ 86%] metadata/VarianFDFReader writing output... [ 86%] metadata/VectraReader writing output... [ 86%] metadata/VeecoReader writing output... [ 86%] metadata/VentanaReader writing output... [ 87%] metadata/VisitechReader writing output... [ 87%] metadata/VolocityClippingReader writing output... [ 87%] metadata/VolocityReader writing output... [ 87%] metadata/WATOPReader writing output... [ 88%] metadata/XLEFReader writing output... [ 88%] metadata/ZeissCZIReader writing output... [ 88%] metadata/ZeissLMSReader writing output... [ 88%] metadata/ZeissLSMReader writing output... [ 88%] metadata/ZeissTIFFReader writing output... [ 89%] metadata/ZeissZVIReader writing output... [ 89%] metadata/ZipReader writing output... [ 89%] supported-formats writing output... [ 89%] users/bisque/index writing output... [ 90%] users/cellprofiler/index writing output... [ 90%] users/comlinetools/conversion writing output... [ 90%] users/comlinetools/display writing output... [ 90%] users/comlinetools/domainlist writing output... [ 91%] users/comlinetools/edit writing output... [ 91%] users/comlinetools/formatlist writing output... [ 91%] users/comlinetools/ijview writing output... [ 91%] users/comlinetools/index writing output... [ 92%] users/comlinetools/mkfake writing output... [ 92%] users/comlinetools/precompressed writing output... [ 92%] users/comlinetools/xml-validation writing output... [ 92%] users/comlinetools/xmlindent writing output... [ 92%] users/comstat2/index writing output... [ 93%] users/endrov/index writing output... [ 93%] users/farsight/index writing output... [ 93%] users/fiji/index writing output... [ 93%] users/focalpoint/index writing output... [ 94%] users/graphic-con/index writing output... [ 94%] users/i3dcore/index writing output... [ 94%] users/icy/index writing output... [ 94%] users/idl/index writing output... [ 95%] users/imagej/features writing output... [ 95%] users/imagej/index writing output... [ 95%] users/imagej/installing writing output... [ 95%] users/imagej/load-images writing output... [ 96%] users/imagej/managing-memory writing output... [ 96%] users/imagej/options writing output... [ 96%] users/imaris/index writing output... [ 96%] users/imglib/index writing output... [ 96%] users/index writing output... [ 97%] users/iqm/index writing output... [ 97%] users/itk/index writing output... [ 97%] users/knime/index writing output... [ 97%] users/matlab/index writing output... [ 98%] users/micromanager/index writing output... [ 98%] users/mipav/index writing output... [ 98%] users/octave/index writing output... [ 98%] users/ome-server/index writing output... [ 99%] users/qu-matlab/index writing output... [ 99%] users/qupath/index writing output... [ 99%] users/r/index writing output... [ 99%] users/vaa3d/index writing output... [100%] users/visad/index writing output... [100%] users/visbio/index writing output... [100%] users/xuvtools/index ( about/index: line 57) -ignored- https://trac.openmicroscopy.org/ome ( about/index: line 124) -ignored- https://github.com/ome/design/issues/55 ( about/whats-new: line 90) -ignored- https://github.com/ome/bioformats/pull/4182 ( about/whats-new: line 90) -ignored- https://github.com/ome/bioformats/pull/4177 ( about/whats-new: line 2004) -ignored- https://github.com/ome/bio-formats-documentation ( about/whats-new: line 2128) -ignored- https://github.com/ome/bioformats/blob/develop/SUPPORT.md ( about/whats-new: line 2279) -ignored- https://github.com/ome/ome-codecs ( about/whats-new: line 2282) -ignored- https://github.com/ome/ome-jai ( about/whats-new: line 2533) -ignored- https://github.com/ome/ome-model ( about/whats-new: line 2683) -ignored- https://github.com/ome/ome-common-java ( about/whats-new: line 2687) -ignored- https://github.com/ome/ome-poi ( about/whats-new: line 2694) -ignored- https://github.com/ome/ome-mdbtools ( about/whats-new: line 2698) -ignored- https://github.com/ome/ome-stubs ( about/whats-new: line 2702) -ignored- https://github.com/ome/ome-metakit ( about/whats-new: line 2921) -ignored- https://github.com/ome/design/issues/42 ( about/whats-new: line 2934) -ignored- https://github.com/ome/bio-formats-jace ( about/whats-new: line 3659) -ignored- https://trac.openmicroscopy.org (developers/building-bioformats: line 21) -ignored- https://github.com/ome/bioformats (developers/building-bioformats: line 44) -ignored- https://github.com/ome/bioformats/tree/develop/components/ (developers/building-bioformats: line 44) -ignored- https://github.com/ome/bioformats/tree/develop/components/forks/ (developers/commit-testing: line 7) -ignored- https://github.com/ome/bioformats/blob/develop/components/test-suite (developers/commit-testing: line 133) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-gpl/test/matlab (developers/components: line 42) -ignored- https://github.com/ome/bioformats/tree/develop/components/bio-formats-plugins (developers/components: line 53) -ignored- https://github.com/ome/bioformats/tree/develop/components/bio-formats-tools (developers/components: line 65) -ignored- https://github.com/ome/bioformats/tree/develop/components/bundles (developers/components: line 92) -ignored- https://github.com/ome/bioformats/tree/develop/components/forks/turbojpeg (developers/components: line 105) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-api (developers/components: line 119) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-bsd (developers/components: line 128) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-gpl (developers/components: line 141) -ignored- https://github.com/ome/bioformats/tree/develop/components/test-suite (developers/components: line 172) -ignored- https://github.com/ome/bio-formats-examples (developers/components: line 184) -ignored- https://github.com/ome/ome-files-cpp (developers/components: line 229) -ignored- https://github.com/ome/ome-metakit/tree/master (developers/components: line 239) -ignored- https://github.com/ome/ome-model/tree/master/ome-xml (developers/components: line 250) -ignored- https://github.com/ome/ome-model/tree/master/specification (developers/components: line 259) -ignored- https://github.com/ome/ome-stubs/tree/master (developers/export: line 134) -ignored- https://trac.openmicroscopy.org/ome/query?status=accepted&status=new&status=reopened&keywords=~export&component=Bio-Formats&col=id&col=summary&col=status&col=type&col=priority&col=milestone&col=component&order=priority (developers/file-reader: line 104) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-api/src/loci/formats/IFormatReader.java (developers/file-writer: line 31) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-api/src/loci/formats/IFormatWriter.java (developers/file-writer: line 34) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-tools/src/loci/formats/tools/ImageConverter.java (developers/format-documentation: line 13) -ignored- https://github.com/ome/bio-formats-documentation/blob/master/src/main/resources/format-pages.txt (developers/generating-test-images: line 328) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/FakeReader.java (developers/index: line 15) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-gpl/utils (developers/index: line 15) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/ (developers/index: line 76) -ignored- https://trac.openmicroscopy.org/ome/report/44 (developers/java-library: line 18) -ignored- https://github.com/ome/openmicroscopy (developers/java-library: line 24) -ignored- https://github.com/ome/bio-formats-examples/blob/master/pom.xml (developers/java-library: line 24) -ignored- https://github.com/ome/bio-formats-examples/blob/master/build.gradle (developers/java-library: line 32) -ignored- http://www.slf4j.org/ (developers/java-library: line 62) -ignored- https://www.adobe.com/devnet/xmp.html (developers/java-library: line 262) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/MultiFileExample.java (developers/java-library: line 265) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/ParallelRead.java (developers/java-library: line 271) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/OrthogonalReader.java (developers/java-library: line 277) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/MinimumWriter.java (developers/java-library: line 281) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/FileExport.java (developers/java-library: line 284) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/TiledExportExample.java (developers/java-library: line 287) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/FileExportSPW.java (developers/java-library: line 293) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/MakeLZW.java (developers/java-library: line 299) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/GetPhysicalMetadata.java (developers/java-library: line 302) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/ReadPhysicalSize.java (developers/java-library: line 305) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-tools/src/loci/formats/tools/ImageInfo.java (developers/java-library: line 310) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/PrintTimestamps.java (developers/java-library: line 313) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/PrintLensNA.java (developers/java-library: line 316) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/PrintROIs.java (developers/java-library: line 319) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/SubResolutionExample.java (developers/java-library: line 325) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/EditImageName.java (developers/java-library: line 328) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/EditTiffComment.java (developers/java-library: line 331) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/writeMapAnnotationsExample.java (developers/java-library: line 334) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/CommentSurgery.java (developers/java-library: line 343) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/FileConvert.java (developers/java-library: line 346) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/ConvertToOmeTiff.java (developers/java-library: line 349) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/WritePrecompressedPlanes.java (developers/java-library: line 353) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/GeneratePyramidResolutions.java (developers/java-library: line 356) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/TiledReaderWriter.java (developers/java-library: line 359) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/OverlappedTiledWriter.java (developers/java-library: line 362) -ignored- https://github.com/ome/bio-formats-examples/blob/master/src/main/java/SimpleTiledWriter.java (developers/java-library: line 368) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/Simple_Read.java (developers/java-library: line 372) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/Read_Image.java (developers/java-library: line 376) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/Mass_Importer.java (developers/java-library: line 384) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/SewTiffs.java (developers/java-library: line 387) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/SumPlanes.java (developers/logging: line 14) -ignored- http://logback.qos.ch/ (developers/logging: line 38) -ignored- http://logback.qos.ch/manual/configuration.html (developers/matlab-dev: line 85) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/matlab/bfopen.m (developers/matlab-dev: line 233) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/matlab/bfGetReader.m (developers/matlab-dev: line 248) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/matlab/bfGetPlane.m (developers/matlab-dev: line 271) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/matlab/bfsave.m (developers/matlab-dev: line 290) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/matlab/createMinimalOMEXMLMetadata.m (developers/overview: line 62) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-api/src/loci/formats/readers.txt (developers/reader-guide: line 38) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PerkinElmerReader.java (developers/reader-guide: line 303) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisReader.java (developers/reader-guide: line 303) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LIFReader.java (developers/reader-guide: line 303) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InCellReader.java (developers/service: line 29) -ignored- https://trac.openmicroscopy.org/ome/ticket/463 (developers/service: line 29) -ignored- https://trac.openmicroscopy.org/ome/ticket/464 (formats/3i-slidebook: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SlidebookReader.java (formats/3i-slidebook-7: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java (formats/abd-tiff: line 11) -ignored- https://andor.oxinst.com/ (formats/abd-tiff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FluoviewReader.java ( formats/aim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/AIMReader.java (formats/alicona-3d: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/AliconaReader.java (formats/amersham-biosciences-gel: line 11) -ignored- https://www.cytivalifesciences.com/en/us/shop/protein-analysis/molecular-imaging-for-proteins/imaging-systems (formats/amersham-biosciences-gel: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GelReader.java (formats/amira-mesh: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/AmiraReader.java (formats/amnis-flowsight: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/FlowSightReader.java (formats/analyze-75: line 9) -ignored- https://www.mayo.edu/research/core-resources/biomedical-imaging-resource-core/overview (formats/analyze-75: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/AnalyzeReader.java (formats/andor-sif: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SIFReader.java (formats/animated-png: line 9) -ignored- https://animatedpngs.com/ (formats/animated-png: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/APNGReader.java (formats/animated-png: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/APNGWriter.java (formats/aperio-afi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/AFIReader.java (formats/aperio-svs-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SVSReader.java (formats/applied-precision-cellworx: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellWorxReader.java ( formats/avi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/AVIReader.java ( formats/avi: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/AVIWriter.java (formats/axon-raw-format: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ARFReader.java (formats/bd-pathway: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BDReader.java (formats/becker-hickl-fifo: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SPCReader.java (formats/becker-hickl-spcimage: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SDTReader.java (formats/big-data-viewer: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/BDVReader.java (formats/bio-rad-gel: line 10) -ignored- https://www.bio-rad.com (formats/bio-rad-gel: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BioRadGelReader.java (formats/bio-rad-gel: line 31) -ignored- https://www.bio-rad.com/en-ch/product/image-lab-software (formats/bio-rad-pic: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BioRadReader.java (formats/bio-rad-pic: line 59) -ignored- http://www.bitplane.com/ (formats/bio-rad-scn: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java (formats/bitplane-imaris: line 10) -ignored- https://imaris.oxinst.com/ (formats/bitplane-imaris: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java (formats/bitplane-imaris: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisTiffReader.java (formats/bitplane-imaris: line 36) -ignored- https://imaris.oxinst.com/support/imaris-file-format (formats/bruker-mri: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BrukerReader.java (formats/burleigh: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BurleighReader.java (formats/canon-dng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DNGReader.java ( formats/cellh5: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/CellH5Reader.java ( formats/cellh5: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/CellH5Writer.java (formats/cellomics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellomicsReader.java (formats/cellsens-vsi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellSensReader.java (formats/cellvoyager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellVoyagerReader.java ( formats/cv7000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CV7000Reader.java (formats/deltavision: line 10) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/microscopy (formats/deltavision: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java (formats/deltavision: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/RCPNLReader.java ( formats/dicom: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/DicomReader.java ( formats/dicom: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/DicomWriter.java ( formats/ecat7: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/Ecat7Reader.java ( formats/eps: line 9) -ignored- https://www.adobe.com/ ( formats/eps: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/EPSReader.java ( formats/eps: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/EPSWriter.java (formats/evotecperkinelmer-opera-flex: line 9) -ignored- https://www.perkinelmer.com/ (formats/evotecperkinelmer-opera-flex: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FlexReader.java ( formats/fei: line 9) -ignored- https://www.fei.com/home/ ( formats/fei: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEIReader.java (formats/fei-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEITiffReader.java ( formats/fits: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/FitsReader.java (formats/gatan-digital-micrograph: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanReader.java (formats/gatan-digital-micrograph: line 56) -ignored- https://www.sas.upenn.edu/~heiney/html-physics/datasqueeze/ (formats/gatan-digital-micrograph-2: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanDM2Reader.java (formats/ge-microct: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MicroCTReader.java ( formats/gif: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/GIFReader.java (formats/hamamatsu-aquacosmos-naf: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NAFReader.java (formats/hamamatsu-his: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HISReader.java (formats/hamamatsu-ndpi: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NDPIReader.java (formats/hamamatsu-ndpi: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NDPISReader.java (formats/hamamatsu-vms: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HamamatsuVMSReader.java (formats/hitachi-s-4800: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HitachiReader.java ( formats/i2i: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/I2IReader.java ( formats/ics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/ICSReader.java ( formats/ics: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/ICSWriter.java ( formats/ics: line 28) -ignored- https://valelab4.ucsf.edu/~nstuurman/IJplugins/Ics_Opener.html ( formats/imacon: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImaconReader.java (formats/imagepro-sequence: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SEQReader.java (formats/imagepro-workspace: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPWReader.java ( formats/imagic: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImagicReader.java ( formats/imod: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IMODReader.java (formats/improvision-openlab-liff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabReader.java (formats/improvision-openlab-raw: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabRawReader.java (formats/improvision-tiff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImprovisionTiffReader.java (formats/imspector-obf: line 9) -ignored- https://imspector.mpibpc.mpg.de (formats/imspector-obf: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OBFReader.java (formats/incell-1000: line 11) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/high-content-analysis (formats/incell-3000: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InCell3000Reader.java ( formats/inr: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/INRReader.java ( formats/inveon: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InveonReader.java (formats/ionpath-mibi: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IonpathMIBITiffReader.java ( formats/iplab: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPLabReader.java (formats/iplab-mac: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IvisionReader.java ( formats/jeol: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JEOLReader.java ( formats/jpeg: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEGReader.java ( formats/jpeg: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEGWriter.java (formats/jpeg-2000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEG2000Reader.java (formats/jpeg-2000: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEG2000Writer.java ( formats/jpk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPKReader.java ( formats/jpx: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPXReader.java (formats/keller-lab-block: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/KLBReader.java (formats/khoros-viff-bitmap: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KhorosReader.java (formats/kodak-bip: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KodakReader.java (formats/lambert-instruments-flim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LiFlimReader.java (formats/lavision-imspector: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImspectorReader.java (formats/leica-lcs-lei: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaReader.java (formats/leica-lif: line 68) -ignored- https://www.fei.com/software/amira-avizo/ (formats/leica-lof: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LOFReader.java (formats/leica-scn: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java (formats/leica-xlef: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/XLEFReader.java ( formats/leo: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LEOReader.java (formats/li-cor-l2d: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/L2DReader.java ( formats/lim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LIMReader.java ( formats/lim: line 55) -ignored- https://www.nis-elements.com/ (formats/metamorph-75-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphTiffReader.java (formats/metamorph-stack-stk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphReader.java (formats/mias-maia-scientific: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MIASReader.java (formats/micro-manager: line 9) -ignored- https://valelab.ucsf.edu/ (formats/micro-manager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MicromanagerReader.java (formats/mikroscan-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MikroscanTiffReader.java (formats/minc-mri: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MINCReader.java (formats/minolta-mrw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRWReader.java ( formats/mng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MNGReader.java ( formats/mng: line 26) -ignored- https://sourceforge.net/projects/libmng/ ( formats/mng: line 30) -ignored- https://sourceforge.net/projects/libmng/files/libmng-testsuites/MNGsuite-1.0/MNGsuite.zip/ ( formats/mng: line 34) -ignored- https://sourceforge.net/projects/libmng/files/libmng-testsuites/Release-20030305/MNGsuite-20030305.zip/ (formats/molecular-imaging: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MolecularImagingReader.java ( formats/mrc: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRCReader.java ( formats/mrc: line 61) -ignored- https://bio3d.colorado.edu/imod/doc/mrc_format.txt ( formats/nef: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonReader.java ( formats/nifti: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NiftiReader.java (formats/nikon-elements-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonElementsTiffReader.java (formats/nikon-ez-c1-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonTiffReader.java (formats/nikon-nis-elements-nd2: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ND2Reader.java ( formats/nrrd: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/NRRDReader.java (formats/olympus-cellrapl: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/APLReader.java (formats/olympus-fluoview-fv1000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FV1000Reader.java (formats/olympus-oir: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OIRReader.java (formats/olympus-omp2info: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java (formats/olympus-scanr: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ScanrReader.java (formats/olympus-sis-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SISReader.java (formats/ome-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMETiffReader.java (formats/ome-tiff: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMETiffWriter.java ( formats/ome-xml: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMEXMLReader.java ( formats/ome-xml: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMEXMLWriter.java (formats/omero-pyramid: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/TiffReader.java (formats/oxford-instruments: line 10) -ignored- https://www.oxinst.com/ (formats/oxford-instruments: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OxfordInstrumentsReader.java ( formats/pcoraw: line 9) -ignored- https://www.excelitas.com/product-category/pco-camera-software ( formats/pcoraw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PCORAWReader.java (formats/pcx-pc-paintbrush: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PCXReader.java (formats/perkin-elmer-densitometer: line 9) -ignored- https://www.perkinelmer.com (formats/perkin-elmer-densitometer: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PDSReader.java (formats/perkinelmer-columbus: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ColumbusReader.java (formats/perkinelmer-nuance: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/IM3Reader.java (formats/perkinelmer-operetta: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OperettaReader.java (formats/perkinelmer-ultraview: line 57) -ignored- https://www.perkinelmer.com/lab-solutions/resources/PDFs/LST/Brochures/BRO_UltraVIEW-VoX-Product-Brochure.pdf ( formats/pgm: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PGMReader.java (formats/photoshop-psd: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PSDReader.java (formats/photoshop-tiff: line 9) -ignored- https://www.adobe.com (formats/photoshop-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PhotoshopTiffReader.java (formats/picoquant-bin: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PQBinReader.java (formats/pict-macintosh-picture: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PictReader.java (formats/prairie-tech-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PrairieReader.java (formats/princeton-instruments-spe: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SPEReader.java ( formats/quesant: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/QuesantReader.java (formats/quicktime-movie: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/QTReader.java (formats/quicktime-movie: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/QTWriter.java ( formats/rhk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/RHKReader.java ( formats/sbig: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SBIGReader.java ( formats/seiko: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SeikoReader.java (formats/simplepci-hcimage: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PCIReader.java (formats/simplepci-hcimage-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SimplePCITiffReader.java (formats/sm-camera: line 18) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SMCameraReader.java ( formats/spider: line 9) -ignored- https://spider.wadsworth.org/spider_doc/spider/docs/spider.html ( formats/spider: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SpiderReader.java ( formats/spider: line 32) -ignored- https://spider.wadsworth.org/spider_doc/spider/docs/image_doc.html ( formats/targa: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/TargaReader.java (formats/tecan-spark-cyto-workspace: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/TecanReader.java ( formats/text: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/TextReader.java ( formats/tiff: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/TiffWriter.java (formats/tillphotonics-tillvision: line 9) -ignored- https://www.fei.com/service-support/Light-Microscopy/ (formats/tillphotonics-tillvision: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/TillVisionReader.java (formats/topometrix: line 10) -ignored- http://www.veeco.com/ (formats/topometrix: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/TopometrixReader.java ( formats/trestle: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/TrestleReader.java ( formats/trestle: line 26) -ignored- http://openslide.cs.cmu.edu/download/openslide-testdata/Trestle/ ( formats/ubm: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/UBMReader.java ( formats/unisoku: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/UnisokuReader.java (formats/varian-fdf: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VarianFDFReader.java (formats/vectra-qptiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VectraReader.java (formats/veeco-afm: line 9) -ignored- http://www.veeco.com (formats/veeco-afm: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VeecoReader.java (formats/ventana-bif: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VentanaReader.java ( formats/vg-sam: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VGSAMReader.java (formats/visitech-xys: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VisitechReader.java (formats/volocity: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VolocityReader.java (formats/volocity: line 27) -ignored- http://cellularimaging.perkinelmer.com/downloads/ (formats/volocity-library-clipping: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/VolocityClippingReader.java (formats/volocity-library-clipping: line 51) -ignored- https://trac.openmicroscopy.org/ome/ticket/6413 ( formats/wa-top: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/WATOPReader.java (formats/windows-bitmap: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/BMPReader.java (formats/zeiss-axio-csm: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ZeissLMSReader.java (formats/zeiss-axiovision-tiff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ZeissTIFFReader.java (formats/zeiss-axiovision-zvi: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ZeissZVIReader.java (formats/zeiss-czi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ZeissCZIReader.java (formats/zeiss-lsm: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ZeissLSMReader.java (users/comlinetools/conversion: line 299) -ignored- https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/ (users/imagej/index: line 64) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/basicMetadata.txt (users/imagej/index: line 69) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/planeTimings.txt (users/imagej/index: line 74) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/recursiveTiffConvert.txt (users/imagej/index: line 78) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/bfOpenAsHyperstack.txt (users/imagej/index: line 84) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/zvi2HyperStack.txt (users/imagej/index: line 90) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/dvSplitTimePoints.txt (users/imagej/index: line 94) -ignored- https://github.com/ome/bioformats/blob/develop/components/bio-formats-plugins/utils/macros/batchTiffConvert.txt (users/imaris/index: line 12) -ignored- https://imaris.oxinst.com/packages/ (users/knime/index: line 4) -ignored- https://www.knime.com/community/image-processing (users/matlab/index: line 8) -ignored- https://github.com/ome/bioformats/tree/develop/components/formats-gpl/matlab (users/mipav/index: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/utils/mipav/PlugInBioFormatsImporter.java (users/mipav/index: line 38) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/utils/mipav/readme.txt (users/ome-server/index: line 115) -ignored- https://github.com/ome/bioformats/tree/v4.4.10/components/scifio/src/loci/formats/ome/OmeisImporter.java (users/xuvtools/index: line 4) -ignored- http://www.xuvtools.org (about/bug-reporting: line 35) ok https://en.wikipedia.org/wiki/Resource_fork ( about/index: line 9) redirect https://doi.org/10.1186/gb-2005-6-5-r47 - with Found to https://genomebiology.biomedcentral.com/articles/10.1186/gb-2005-6-5-r47 ( about/index: line 9) ok https://ome-model.readthedocs.io/en/stable/ome-tiff ( formats/fits: line 50) redirect http://archive.stsci.edu/fits/ - permanently to https://archive.stsci.edu/fits/ ( formats/fits: line 28) redirect http://archive.stsci.edu/fits/fits_standard/ - permanently to https://archive.stsci.edu/fits/fits_standard/ ( formats/imod: line 33) ok http://bio3d.colorado.edu/imod/doc/binspec.html ( formats/imod: line 9) ok http://bio3d.colorado.edu ( formats/mrc: line 35) ok http://bio3d.colorado.edu/imod/doc/mrc_format.txt ( formats/imod: line 27) ok http://bio3d.colorado.edu/imod/ ( formats/mrc: line 30) ok http://bio3d.colorado.edu/imod/files/imod_data.tar.gz (about/bug-reporting: line 64) ok https://forum.image.sc/tag/bio-formats ( about/whats-new: line 2957) ok http://blog.openmicroscopy.org/data-model/future-plans/2016/05/23/folders-upcoming/ ( formats/cellh5: line 9) redirect http://cellh5.org/ - permanently to https://cellcognition-project.org/ (developers/java-library: line 95) redirect http://commons.apache.org/lang/ - with Found to https://commons.apache.org/proper/commons-lang/ (users/cellprofiler/index: line 4) redirect http://cellprofiler.org/ - permanently to https://cellprofiler.org/ (formats/gatan-digital-micrograph: line 27) redirect http://blake.bcm.edu/emanwiki/EMAN2 - permanently to https://blake.bcm.edu/emanwiki/EMAN2 (developers/java-library: line 98) redirect http://commons.apache.org/logging/ - with Found to https://commons.apache.org/proper/commons-logging/ (users/bisque/index: line 4) redirect http://bioimage.ucsb.edu/bisque - permanently to https://bioimage.ucsb.edu/bisque ( about/whats-new: line 2466) redirect http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_10.7.html#sect_10.7.1.3 - permanently to https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_10.7.html (developers/building-bioformats: line 99) redirect http://eclipse.org/downloads/compare.php?release=kepler - with Found to https://www.eclipse.org/downloads/packages/compare (formats/metamorph-stack-stk: line 57) redirect http://dimin.net/ - permanently to https://dimin.net/ (users/farsight/index: line 19) ok http://farsight-toolkit.ee.uh.edu/wiki/FARSIGHT_HowToBuild (users/vaa3d/index: line 10) ok http://farsight-toolkit.ee.uh.edu/wiki/FARSIGHT_Tutorials/Building_Software/Bio-Formats/Building_C%2B%2B_Bindings (users/farsight/index: line 4) ok http://farsight-toolkit.ee.uh.edu/wiki/Main_Page (users/farsight/index: line 11) ok http://farsight-toolkit.ee.uh.edu/wiki/NucleusEditor (users/farsight/index: line 17) ok http://farsight-toolkit.ee.uh.edu/wiki/Special:FarsightDownloads (developers/java-library: line 149) ok http://googleapis.github.io/google-http-java-client ( about/whats-new: line 2654) redirect http://glencoesoftware.com/pressreleases/2016-08-30-glencoe-software-zeiss-partner-open-source-file-reader-whole-slide.html - permanently to https://www.glencoesoftware.com/pressreleases/2016-08-30-glencoe-software-zeiss-partner-open-source-file-reader-whole-slide.html (users/imagej/installing: line 8) redirect http://help.openmicroscopy.org/imagej.html - permanently to https://help.openmicroscopy.org/imagej.html (users/fiji/index: line 4) redirect http://fiji.sc/ - permanently to https://fiji.sc/ (users/vaa3d/index: line 4) ok http://home.penglab.com/ ( users/icy/index: line 4) redirect http://icy.bioimageanalysis.org/ - permanently to https://icy.bioimageanalysis.org/ (users/fiji/index: line 12) redirect http://imagej.net/Bio-Formats - permanently to https://imagej.net/formats/bio-formats (formats/simplepci-hcimage: line 52) redirect http://hcimage.com/simple-pci-legacy/ - permanently to https://hcimage.com/simple-pci-legacy/ (users/imagej/index: line 26) redirect http://imagej.net/Image5D - permanently to https://imagej.net/plugins/image5d (formats/olympus-oir: line 26) redirect http://imagej.net/OlympusImageJPlugin - permanently to https://imagej.net/formats/olympus (users/imagej/features: line 7) redirect http://imagej.net/SpatialCalibration - permanently to https://imagej.net/imaging/spatial-calibration ( users/idl/index: line 17) ok http://karo03.bplaced.net/karo/IDL/_pro/ij_read_bio_formats.pro (developers/java-library: line 65) ok http://jcommander.org/ ( users/idl/index: line 17) ok http://karo03.bplaced.net/karo/ro_embed.php?file=IDL/index.html (users/imglib/index: line 4) ok http://imglib2.net/ ( formats/ics: line 27) redirect http://libics.sourceforge.net/ - permanently to https://libics.sourceforge.net/ (developers/logging: line 19) redirect http://logging.apache.org/log4j - with Found to https://logging.apache.org/log4j/2.x/index.html (users/endrov/index: line 4) redirect http://ki.se/start - permanently to https://ki.se/ (formats/animated-png: line 29) redirect http://ksquirrel.sourceforge.net/download.php - permanently to https://ksquirrel.sourceforge.net/download.php (developers/matlab-dev: line 10) redirect http://mathworks.com/help/matlab/matlab_external/product-overview.html - permanently to https://www.mathworks.com/help/matlab/matlab_external/product-overview.html ( formats/pgm: line 26) redirect http://netpbm.sourceforge.net/ - permanently to https://netpbm.sourceforge.net/ ( formats/pgm: line 31) redirect http://netpbm.sourceforge.net/doc/pgm.html - permanently to https://netpbm.sourceforge.net/doc/pgm.html (developers/java-library: line 116) redirect http://objenesis.org - permanently to https://objenesis.org/ (developers/components: line 221) redirect http://poi.apache.org - permanently to https://poi.apache.org/ (formats/khoros-viff-bitmap: line 28) redirect http://netghost.narod.ru/gff/sample/images/viff/index.htm - permanently to https://netghost.narod.ru/gff/sample/images/viff/index.htm (formats/imagepro-workspace: line 56) redirect http://poi.apache.org/ - permanently to https://poi.apache.org/ ( formats/nrrd: line 9) redirect http://teem.sourceforge.net/ - permanently to https://teem.sourceforge.net/ (developers/service: line 21) redirect http://spring.io - permanently to https://spring.io/ ( formats/nrrd: line 26) redirect http://teem.sourceforge.net/nrrd/ - permanently to https://teem.sourceforge.net/nrrd/ ( formats/nrrd: line 34) redirect http://teem.sourceforge.net/nrrd/format.html - permanently to https://teem.sourceforge.net/nrrd/format.html (developers/format-documentation: line 13) redirect http://velocity.apache.org/ - permanently to https://velocity.apache.org/ (formats/bio-rad-pic: line 60) redirect http://svi.nl/ - with Found to https://svi.nl/HomePage (users/imglib/index: line 10) redirect http://scif.io/ - permanently to https://scif.io/ (formats/animated-png: line 34) ok http://wiki.mozilla.org/APNG_Specification ( about/index: line 142) redirect http://visad.ssec.wisc.edu - with Found to https://visad.ssec.wisc.edu/ (formats/bd-pathway: line 10) redirect http://www.bdbiosciences.com - permanently to https://www.bdbiosciences.com/en-gb ( formats/iplab: line 11) redirect http://www.bdbiosciences.com/ - permanently to https://www.bdbiosciences.com/en-gb (developers/java-library: line 110) ok http://www.beanshell.org (developers/java-library: line 112) ok http://www.beanshell.org/license.html ( formats/gif: line 9) redirect http://www.compuserve.com/ - with Found to https://www.compuserve.com/ (users/endrov/index: line 4) ok http://www.bionut.ki.se/groups/tbu/ (users/comstat2/index: line 4) ok http://www.comstat.dk/ (formats/minc-mri: line 9) ok http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC (formats/windows-bitmap: line 54) ok http://www.faqs.org/faqs/graphics/fileformats-faq/part3/section-18.html (formats/olympus-fluoview-tiff: line 26) redirect http://www.dimin.net/ - permanently to https://dimin.net/ (formats/gatan-digital-micrograph: line 10) redirect http://www.gatan.com/ - permanently to https://www.gatan.com/ (formats/gatan-digital-micrograph-2: line 9) redirect http://www.gatan.com - permanently to https://www.gatan.com/ ( formats/jpeg: line 9) ok http://www.ijg.org/ ( formats/imagic: line 9) redirect http://www.imagescience.de - permanently to https://www.imagescience.de/ ( formats/imagic: line 26) redirect http://www.imagescience.de/em2em.html - permanently to https://www.imagescience.de/em2em.html (users/vaa3d/index: line 4) redirect http://www.hhmi.org/programs/biomedical-research/janelia-research-campus - permanently to https://www.janelia.org/ (formats/axon-raw-format: line 29) ok http://www.indecbiosystems.com/imagingworkbench/ApplicationNotes/IWAppNote11-ARF_File_Format.pdf (formats/axon-raw-format: line 10) ok http://www.indecbiosystems.com/ (developers/java-library: line 89) ok http://www.jgoodies.com/downloads/libraries/ (formats/hamamatsu-vms: line 9) redirect http://www.hamamatsu.com - with Found to https://www.hamamatsu.com/jp/en.html (formats/3i-slidebook: line 9) redirect http://www.intelligent-imaging.com/ - with Found to https://www.intelligent-imaging.com/ ( formats/mng: line 9) ok http://www.libpng.org/pub/mng/mngnews.html ( formats/mng: line 56) ok http://www.libpng.org/pub/mng/ ( formats/mng: line 56) ok http://www.libpng.org/pub/mng/spec ( formats/png: line 58) ok http://www.libpng.org/pub/png/ ( formats/png: line 9) ok http://www.libpng.org/pub/png/pngnews.html (formats/lavision-imspector: line 9) redirect http://www.lavisionbiotec.com/ - with See Other to https://www.miltenyibiotec.com/about-us/miltenyi-biotec-companies/lavision-biotec-gmbh.html ( formats/png: line 32) ok http://www.libpng.org/pub/png/spec/iso/ (users/matlab/index: line 68) redirect http://www.mathworks.com/matlabcentral/fileexchange/32920-imread-for-multiple-life-science-image-file-formats - with Found to https://www.mathworks.com/matlabcentral/fileexchange/32920-imread-for-multiple-life-science-image-file-formats ( formats/lim: line 10) redirect http://www.lim.cz/ - permanently to https://www.laboratory-imaging.com/ (formats/li-cor-l2d: line 10) redirect http://www.licor.com/ - permanently to https://www.licor.com/env/products/trisonica/ (formats/deltavision: line 63) redirect http://www.mediacy.com/ - permanently to https://mediacy.com/ (formats/imagepro-sequence: line 28) redirect http://www.mediacy.com/imageproplus - permanently to https://mediacy.com/image-pro/ (formats/imspector-obf: line 11) redirect http://www.mpibpc.mpg.de/de - permanently to https://www.mpinat.mpg.de/de (formats/nikon-elements-tiff: line 9) redirect http://www.nikon.com - permanently to https://www.nikon.com/ ( formats/nef: line 9) redirect http://www.nikon.com/ - permanently to https://www.nikon.com/ (formats/ome-tiff: line 9) ok http://www.openmicroscopy.org/ ( formats/ome-xml: line 29) ok http://www.openmicroscopy.org/Schemas/ ( formats/nef: line 28) ok http://www.nikondigital.org/articles/library/nikon_d2x_first_impressions.htm ( about/whats-new: line 2881) redirect http://www.openmicroscopy.org/info/slidebook - with Found to https://www.intelligent-imaging.com/technical-answers (formats/animated-png: line 28) redirect http://www.opera.com - permanently to https://www.opera.com:443/ ( formats/dicom: line 37) ok http://www.osirix-viewer.com/resources/dicom-image-library/ (formats/picoquant-bin: line 9) redirect http://www.picoquant.com/ - permanently to https://www.picoquant.com/ ( formats/fits: line 9) redirect http://www.nrao.edu/ - with Found to https://public.nrao.edu (formats/picoquant-bin: line 26) redirect http://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software - permanently to https://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software ( formats/aim: line 9) redirect http://www.scanco.ch/ - permanently to https://www.scanco.ch/ ( formats/rhk: line 10) redirect http://www.rhk-tech.com - permanently to https://www.rhk-tech.com/ ( formats/nrrd: line 30) redirect http://www.sci.utah.edu/%7Egk/DTI-data/ - with Found to https://www.sci.utah.edu/~gk/DTI-data/ (formats/ge-microct: line 28) redirect http://www.sci.utah.edu/cibc-software/cibc-datasets.html - with Found to https://www.sci.utah.edu/cibc-software/cibc-datasets.html (users/qu-matlab/index: line 4) redirect http://www.scs2.net/home/index.php?option=com_content&view=article&id=46%3Aqu-for-matlab&catid=34%3Aqu&Itemid=55 - permanently to https://www.scs2.net/next/index.php?id=120 (developers/java-library: line 125) redirect http://www.slf4j.org - with Found to https://www.slf4j.org/ (formats/cellomics: line 9) redirect http://www.thermofisher.com/ - permanently to https://www.thermofisher.com/uk/en/home.html (users/qu-matlab/index: line 13) redirect http://www.scs2.net/home/index.php?option=com_content&view=article&id=46%3Aqu-for-matlab&catid=34%3Aqu&Itemid=55&limitstart=3 - permanently to https://www.scs2.net/next/index.php?id=120 (users/visad/index: line 4) redirect http://www.ssec.wisc.edu/%7Ebillh/visad.html - with Found to https://www.ssec.wisc.edu/~billh/visad.html (users/farsight/index: line 4) redirect http://www.uh.edu/ - with Found to https://uh.edu/ (formats/visitech-xys: line 9) redirect http://www.visitech.co.uk/ - permanently to https://visitech.co.uk/ ( formats/jpeg: line 29) redirect http://www.w3.org/Graphics/JPEG/jfif3.pdf - permanently to https://www.w3.org/Graphics/JPEG/jfif3.pdf ( formats/unisoku: line 10) redirect http://www.unisoku.com - permanently to https://www.unisoku.com/ (developers/java-library: line 140) redirect http://xerces.apache.org/xerces2-j - permanently to https://xerces.apache.org/xerces2-j/ (formats/amira-mesh: line 9) redirect http://www.vsg3d.com/ - permanently to https://www.thermofisher.com/uk/en/home/electron-microscopy/products/software-em-3d-vis/3d-visualization-analysis-software.html (developers/java-library: line 143) redirect http://xerces.apache.org/xml-commons/components/external/ - permanently to https://xerces.apache.org/xml-commons/components/external/ (developers/java-library: line 134) redirect http://xml.apache.org/xalan-j - permanently to https://xml.apache.org/xalan-j/ (developers/python-dev: line 10) ok https://allencellmodeling.github.io/aicsimageio/ ( about/whats-new: line 3491) redirect https://artifacts.openmicroscopy.org - with Found to https://artifacts.openmicroscopy.org/ui/ (developers/java-library: line 7) redirect https://artifacts.openmicroscopy.org/artifactory - with Found to https://artifacts.openmicroscopy.org:443/ui/ ( formats/cv7000: line 10) redirect http://www.yokogawa.com/ - permanently to https://www.yokogawa.com/ (developers/java-library: line 80) ok https://asm.ow2.io (users/vaa3d/index: line 4) redirect https://alleninstitute.org/what-we-do/brain-science/research/products-tools/vaa3d/ - permanently to https://alleninstitute.org/division/brain-science/ ( about/whats-new: line 589) ok https://bio-formats.readthedocs.io/en/stable/ ( users/r/index: line 10) ok https://bioconductor.org (developers/r-dev: line 10) ok https://bioconductor.org/packages/devel/bioc/html/RBioFormats.html (developers/r-dev: line 28) ok https://bioconductor.org/packages/devel/bioc/vignettes/RBioFormats/inst/doc/RBioFormats.html (formats/bio-rad-gel: line 53) redirect https://biorad1sc-doc.readthedocs.io/ - with Found to https://biorad1sc-doc.readthedocs.io/en/latest/ (formats/bio-rad-gel: line 57) redirect https://biorad1sc-reader.readthedocs.io/ - with Found to https://biorad1sc-reader.readthedocs.io/en/latest/ (developers/java-library: line 131) ok https://bitbucket.org/snakeyaml/snakeyaml (formats/keller-lab-block: line 9) redirect https://bitbucket.org/fernandoamat/keller-lab-block-filetype/overview - with Found to https://bitbucket.org/fernandoamat/keller-lab-block-filetype/src (users/i3dcore/index: line 4) ok https://cbia.fi.muni.cz (users/i3dcore/index: line 4) ok https://cbia.fi.muni.cz/software/i3d-library.html (formats/jpeg-2000: line 27) ok https://code.google.com/archive/p/jj2000/ (developers/java-library: line 197) ok https://commons.apache.org/proper/commons-codec/ (developers/java-library: line 56) ok https://commons.apache.org/proper/commons-io/ (developers/java-library: line 59) ok https://commons.apache.org/proper/commons-lang/ (developers/java-library: line 182) ok https://checkerframework.org/ (users/mipav/index: line 4) ok https://cit.nih.gov/ (formats/quicktime-movie: line 32) ok https://developer.apple.com/documentation/quicktime-file-format (formats/ventana-bif: line 10) ok https://diagnostics.roche.com/global/en/home.html (developers/java-library: line 188) ok https://developers.google.com/j2objc/ ( formats/sbig: line 8) ok https://diffractionlimited.com/ ( about/whats-new: line 66) ok https://datacommons.cancer.gov/repository/imaging-data-commons/ ( formats/sbig: line 26) redirect https://diffractionlimited.com/downloads/sbig/AppNoteArchive.zip - permanently to https://cdn.diffractionlimited.com/downloads/sbig/AppNoteArchive.zip (users/octave/index: line 34) ok https://docs.octave.org/interpreter/Making-Java-Classes-Available.html (about/bug-reporting: line 13) broken https://downloads.openmicroscopy.org/latest/bio-formats8/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eab20>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/pattern-file: line 96) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html ( formats/jpeg: line 51) ok https://docs.oracle.com/javase/7/docs/technotes/guides/imageio/ (users/comlinetools/index: line 147) ok https://docs.oracle.com/javase/7/docs/technotes/samples/hprof.html (developers/java-library: line 101) ok https://docs.unidata.ucar.edu/netcdf-java/5.3/userguide/index.html (users/imagej/load-images: line 157) redirect https://download.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html - with Found to https://docs.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html (formats/analyze-75: line 28) broken http://web.archive.org/web/20070927191351/http://www.mayo.edu/bir/PDF/ANALYZE75.pdf - HTTPConnectionPool(host='web.archive.org', port=80): Max retries exceeded with url: /web/20070927191351/http://www.mayo.edu/bir/PDF/ANALYZE75.pdf (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f7f36755430>, 'Connection to web.archive.org timed out. (connect timeout=30)')) ( index: line 26) broken https://docs.openmicroscopy.org/contributing/ - HTTPSConnectionPool(host='docs.openmicroscopy.org', port=443): Max retries exceeded with url: /contributing/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eaf70>, 'Connection to docs.openmicroscopy.org timed out. (connect timeout=30)')) (developers/components: line 145) broken https://docs.openmicroscopy.org/contributing/ci-bio-formats.html - HTTPSConnectionPool(host='docs.openmicroscopy.org', port=443): Max retries exceeded with url: /contributing/ci-bio-formats.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c2e0>, 'Connection to docs.openmicroscopy.org timed out. (connect timeout=30)')) (developers/index: line 80) broken https://docs.openmicroscopy.org/contributing/index.html - HTTPSConnectionPool(host='docs.openmicroscopy.org', port=443): Max retries exceeded with url: /contributing/index.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679be20>, 'Connection to docs.openmicroscopy.org timed out. (connect timeout=30)')) (users/fiji/index: line 28) broken https://downloads.openmicroscopy.org/bio-formats/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /bio-formats/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2f40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/index: line 24) broken https://downloads.openmicroscopy.org/images/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ea490>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/amira-mesh: line 29) broken https://downloads.openmicroscopy.org/images/AmiraMesh/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/AmiraMesh/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa910>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1456) broken https://downloads.openmicroscopy.org/images/BDV/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/BDV/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36796df0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1458) broken https://downloads.openmicroscopy.org/images/CellH5/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/CellH5/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674c820>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1457) broken https://downloads.openmicroscopy.org/images/CellWorX/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/CellWorX/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367414c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/cellomics: line 29) broken https://downloads.openmicroscopy.org/images/Cellomics/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Cellomics/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755880>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/dicom: line 43) broken https://downloads.openmicroscopy.org/images/DICOM/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/DICOM/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c430>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/deltavision: line 36) broken https://downloads.openmicroscopy.org/images/DV/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/DV/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa7f0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/ecat7: line 29) broken https://downloads.openmicroscopy.org/images/ECAT7/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/ECAT7/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741ee0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1459) broken https://downloads.openmicroscopy.org/images/Flex/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Flex/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755430>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1460) broken https://downloads.openmicroscopy.org/images/Gatan/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Gatan/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741700>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/hamamatsu-ndpi: line 36) broken https://downloads.openmicroscopy.org/images/Hamamatsu-NDPI/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Hamamatsu-NDPI/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c760>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/hamamatsu-vms: line 32) broken https://downloads.openmicroscopy.org/images/Hamamatsu-VMS/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Hamamatsu-VMS/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679bf40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1461) broken https://downloads.openmicroscopy.org/images/ICS/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/ICS/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa8e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/bitplane-imaris: line 41) broken https://downloads.openmicroscopy.org/images/Imaris-IMS/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Imaris-IMS/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d159670>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/incell-1000: line 30) broken https://downloads.openmicroscopy.org/images/InCell2000/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/InCell2000/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d12ee80>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/incell-3000: line 30) broken https://downloads.openmicroscopy.org/images/InCell3000/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/InCell3000/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367965e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1462) broken https://downloads.openmicroscopy.org/images/KLB/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/KLB/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2d90>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/leo: line 30) broken https://downloads.openmicroscopy.org/images/LEO/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/LEO/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d14c0a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/leica-lif: line 36) broken https://downloads.openmicroscopy.org/images/Leica-LIF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Leica-LIF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2c70>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/leica-scn: line 32) broken https://downloads.openmicroscopy.org/images/Leica-SCN/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Leica-SCN/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36796280>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 859) broken https://downloads.openmicroscopy.org/images/Leica-XLEF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Leica-XLEF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f8b0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/mrc: line 36) broken https://downloads.openmicroscopy.org/images/MRC/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/MRC/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741ac0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/micro-manager: line 32) broken https://downloads.openmicroscopy.org/images/Micro-Manager/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Micro-Manager/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741dc0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/nikon-nis-elements-nd2: line 32) broken https://downloads.openmicroscopy.org/images/ND2/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/ND2/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d2e3a30>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/nifti: line 30) broken https://downloads.openmicroscopy.org/images/NIfTI/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/NIfTI/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755a30>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 2094) broken https://downloads.openmicroscopy.org/images/NRRD/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/NRRD/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa3a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/imspector-obf: line 30) broken https://downloads.openmicroscopy.org/images/OBF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/OBF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d12ed00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/ome-tiff: line 31) broken https://downloads.openmicroscopy.org/images/OME-TIFF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/OME-TIFF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c5e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 593) broken https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/BBBC017/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/OME-TIFF/2016-06/BBBC017/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa6d0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1136) broken https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/plate-companion/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/OME-TIFF/2016-06/plate-companion/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2fa0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/ome-xml: line 31) broken https://downloads.openmicroscopy.org/images/OME-XML/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/OME-XML/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755940>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 640) broken https://downloads.openmicroscopy.org/images/Olympus-FluoView/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Olympus-FluoView/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ea850>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/olympus-oir: line 32) broken https://downloads.openmicroscopy.org/images/Olympus-OIR - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Olympus-OIR (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679b1f0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/png: line 34) broken https://downloads.openmicroscopy.org/images/PNG/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/PNG/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d14c250>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1463) broken https://downloads.openmicroscopy.org/images/PerkinElmer-Columbus/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/PerkinElmer-Columbus/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aae20>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/perkinelmer-operetta: line 29) broken https://downloads.openmicroscopy.org/images/PerkinElmer-Operetta/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/PerkinElmer-Operetta/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f5e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/becker-hickl-fifo: line 29) broken https://downloads.openmicroscopy.org/images/SPC-FIFO/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/SPC-FIFO/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367418e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/aperio-svs-tiff: line 32) broken https://downloads.openmicroscopy.org/images/SVS/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/SVS/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ba220>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/tiff: line 35) broken https://downloads.openmicroscopy.org/images/TIFF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/TIFF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c130>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/trestle: line 31) broken https://downloads.openmicroscopy.org/images/Trestle/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Trestle/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2520>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/vectra-qptiff: line 29) broken https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Vectra-QPTIFF/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367414c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (formats/vectra-qptiff: line 28) broken https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ea250>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1464) broken https://downloads.openmicroscopy.org/images/Ventana/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Ventana/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ba850>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 1465) broken https://downloads.openmicroscopy.org/images/Zeiss-CZI/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /images/Zeiss-CZI/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674c910>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/building-bioformats: line 37) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f4f0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 148) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelFiller.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ChannelFiller.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aaca0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 144) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelMerger.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ChannelMerger.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679b730>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 140) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelSeparator.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ChannelSeparator.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa4c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 67) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/CoreMetadata.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/CoreMetadata.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08fe20>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 155) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/DimensionSwapper.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/DimensionSwapper.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755ee0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 136) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FileStitcher.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FileStitcher.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ba850>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 50) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatException.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatException.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d12eca0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 6) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d14c100>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 67) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#core - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eaeb0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 170) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#datasetDescription - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f640>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 174) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#domains - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d06a070>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 166) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#hasCompanionFiles - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09cdf0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 67) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#initFile-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aac40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 115) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#isThisType-byte:A- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741df0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 84) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#makeFilterMetadata-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36796e50>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 78) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#metadata - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d1598e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 159) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#suffixNecessary - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eaa00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 162) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#suffixSufficient - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741f40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 174) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741250>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 14) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#ASTRONOMY_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eafa0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 32) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#CANNOT_GROUP - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741ee0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 30) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#CAN_GROUP - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679e940>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 15) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#EM_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f790>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 16) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#FLIM_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d159670>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 17) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GEL_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674cf70>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 18) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GRAPHICS_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f43a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 19) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HCS_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741ac0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 20) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HISTOLOGY_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741fd0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 21) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#LM_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367412e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 22) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#MEDICAL_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4250>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 28) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#MUST_GROUP - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367eacd0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 23) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#SEM_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679b2e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 24) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#SPM_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367550a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/domainlist: line 25) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#UNKNOWN_DOMAIN - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/FormatTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4a00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 21) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatHandler.html#setId-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatHandler.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679bdf0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 10) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08fdf0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 110) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#close-boolean- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d1599a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 23) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#fileGroupOption-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741820>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 67) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getDimensionOrder-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d14c1f0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 52) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getImageCount-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4460>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/matlab-dev: line 255) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getIndex-int-int-int- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755d90>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 92) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getMetadataValue-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755040>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( developers/wsi: line 41) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getOptimalTileHeight-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367415e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( developers/wsi: line 41) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getOptimalTileWidth-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08fd00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 79) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getPixelType-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa4c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 64) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getRGBChannelCount-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674c370>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 49) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSeriesCount-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ea850>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 38) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSeriesUsedFiles-boolean- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c3a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 61) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSizeC-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679ef10>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 58) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSizeT-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d1fe2e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 43) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSizeX-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4c40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 46) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSizeY-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4e20>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 55) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSizeZ-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3679efd0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 76) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isInterleaved-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d29af10>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 73) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isLittleEndian-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aad00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 70) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isRGB-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08fc40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 12) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isSingleFile-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c5e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 17) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isThisType-loci.common.RandomAccessInputStream- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674c850>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 50) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#openBytes-int-byte:A-int-int-int-int- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f4c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( developers/wsi: line 21) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#setFlattenedResolutions-boolean- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4b80>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 21) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#setSeries-int- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367ea190>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-writer: line 6) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatWriter.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IFormatWriter.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c9a0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( developers/wsi: line 25) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IPyramidHandler.html#getResolutionCount-- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IPyramidHandler.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4820>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( developers/wsi: line 25) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IPyramidHandler.html#setResolution-int- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/IPyramidHandler.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0b5a30>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 10) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ImageReader.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ImageReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367556d0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 161) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ImageTools.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ImageTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aabe0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 158) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/Memoizer.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/Memoizer.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa1c0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/matlab-dev: line 339) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/Memoizer.html#DEFAULT_MINIMUM_ELAPSED - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/Memoizer.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d23d0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/matlab-dev: line 339) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/Memoizer.html#setId-java.lang.String- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/Memoizer.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f43d0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 84) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/MetadataTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3674cf70>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 94) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader-boolean- - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/MetadataTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f550>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 151) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MinMaxCalculator.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/MinMaxCalculator.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755220>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 116) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ReaderWrapper.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/ReaderWrapper.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755550>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 210) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/codec/BaseCodec.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/codec/BaseCodec.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09ca60>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 161) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/gui/AWTImageTools.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/gui/AWTImageTools.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aac40>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/file-reader: line 132) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/gui/BufferedImageReader.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/gui/BufferedImageReader.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d08f4f0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/options: line 76) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/in/DynamicMetadataOptions.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/in/DynamicMetadataOptions.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755490>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 6) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/in/package-summary.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/in/package-summary.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36755700>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/reader-guide: line 204) broken https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/services/package-summary.html - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/api/loci/formats/services/package-summary.html (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0b5c10>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/octave/index: line 36) broken https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/artifacts/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d09c730>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/comlinetools/index: line 9) broken https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bftools.zip - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/artifacts/bftools.zip (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367f4a00>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/imagej/index: line 13) broken https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bioformats_package.jar - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/artifacts/bioformats_package.jar (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d14c940>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/java-library: line 32) broken https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/formats-gpl.jar - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/bio-formats8/artifacts/formats-gpl.jar (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367558e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (developers/index: line 59) broken https://downloads.openmicroscopy.org/latest/ome-files-cpp/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /latest/ome-files-cpp/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d2460>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( formats/avi: line 68) ok https://en.wikipedia.org/wiki/Audio_Video_Interleave (users/imglib/index: line 4) ok https://en.wikipedia.org/wiki/Color_depth (developers/service: line 7) ok https://en.wikipedia.org/wiki/Component-based_software_engineering (formats/minolta-mrw: line 26) ok https://en.wikipedia.org/wiki/Dcraw (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_injection (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_inversion_principle (users/focalpoint/index: line 4) ok https://en.wikipedia.org/wiki/File_manager (developers/code-formatting: line 22) ok https://en.wikipedia.org/wiki/Indentation_style#Java ( formats/dicom: line 29) ok https://en.wikipedia.org/wiki/List_of_freeware_health_software ( formats/mrc: line 66) ok https://en.wikipedia.org/wiki/MRC_%28file_format%29 ( developers/wsi: line 14) ok https://en.wikipedia.org/wiki/Pyramid_(image_processing) ( formats/targa: line 9) ok https://en.wikipedia.org/wiki/Truevision (users/focalpoint/index: line 4) ok https://en.wikipedia.org/wiki/Windows_Explorer (developers/java-library: line 185) ok https://errorprone.info/ ( formats/fits: line 50) ok https://fits.gsfc.nasa.gov/ (users/comlinetools/precompressed: line 31) ok https://forum.image.sc/t/exporting-a-dicom-stack/99400 (users/comlinetools/precompressed: line 30) ok https://forum.image.sc/t/vsi-to-dcm-file-conversion/98249/5 (developers/building-bioformats: line 21) ok https://git-scm.com/ ( about/whats-new: line 886) redirect https://github.blog/2021-09-01-improving-git-protocol-security-github/ - permanently to https://github.blog/security/application-security/improving-git-protocol-security-github/ ( about/whats-new: line 2977) broken https://downloads.openmicroscopy.org/ome-files-cpp/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /ome-files-cpp/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f36741af0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/whats-new: line 438) ok https://github.com/BIOP/quick-start-czi-reader ( about/whats-new: line 3513) ok https://github.com/EsotericSoftware/kryo (developers/dotnet-dev: line 10) ok https://github.com/BiologyTools/BioFormatsNET6 (developers/java-library: line 77) ok https://github.com/EsotericSoftware/reflectasm (developers/java-library: line 83) ok https://github.com/EsotericSoftware/minlog (developers/java-library: line 212) ok https://github.com/FasterXML/jackson-annotations (developers/java-library: line 209) ok https://github.com/FasterXML/jackson-core (developers/java-library: line 215) ok https://github.com/FasterXML/jackson-databind (developers/java-library: line 104) ok https://github.com/JodaOrg/joda-time (developers/java-library: line 103) ok https://github.com/Unidata/thredds/blob/v4.3.22/cdm/license.txt (developers/java-library: line 71) ok https://github.com/airlift/aircompressor (developers/java-library: line 155) ok https://github.com/aslom/xpp3 (developers/java-library: line 157) ok https://github.com/aslom/xpp3/blob/master/LICENSE.txt (developers/java-library: line 68) ok https://github.com/drewnoakes/metadata-extractor ( about/index: line 65) ok https://github.com/fiji/fiji/issues (developers/java-library: line 179) ok https://github.com/findbugsproject/findbugs (developers/java-library: line 86) ok https://github.com/google/guava (developers/components: line 271) ok https://github.com/glencoesoftware/jxrlib (developers/service: line 22) ok https://github.com/google/guice (developers/java-library: line 113) ok https://github.com/hamcrest/JavaHamcrest (formats/bitplane-imaris: line 30) ok https://github.com/imaris/ImarisWriter ( users/iqm/index: line 4) ok https://github.com/iqmmug/iqm (formats/bio-rad-gel: line 65) ok https://github.com/itsayellow/biorad1sc_reader (developers/components: line 77) ok https://github.com/jai-imageio/jai-imageio-core (developers/components: line 212) ok https://github.com/mdbtools/mdbtools (users/endrov/index: line 4) ok https://github.com/mahogny/Endrov (developers/java-library: line 119) ok https://github.com/perf4j/perf4j (users/matlab/index: line 67) ok https://github.com/pramukta/bf-tools (developers/commit-testing: line 136) ok https://github.com/psexton/matlab-xunit (users/qupath/index: line 4) ok https://github.com/qupath/qupath-bioformats-extension/ ( users/itk/index: line 21) ok https://github.com/scifio/scifio-imageio (users/imglib/index: line 10) ok https://github.com/scifio/scifio/blob/master/src/main/java/io/scif/img/ImgOpener.java (developers/java-library: line 169) ok https://github.com/stleary/JSON-java/blob/master/LICENSE (developers/java-library: line 167) ok https://github.com/stleary/json-java (developers/components: line 96) ok https://github.com/scijava/native-lib-loader (developers/java-library: line 170) ok https://github.com/xerial/sqlite-jdbc (formats/zeiss-czi: line 27) ok https://github.com/zeiss-microscopy/libCZI (developers/java-library: line 194) ok https://hc.apache.org/ (formats/canon-dng: line 9) ok https://global.canon/en/index.html (formats/big-data-viewer: line 10) redirect https://imagej.net/BigDataViewer - permanently to https://imagej.net/plugins/bdv/ (formats/zeiss-lsm: line 27) redirect https://imagej.net/LSM_Toolbox - permanently to https://imagej.net/formats/lsm (formats/simplepci-hcimage: line 9) ok https://hcimage.com ( formats/tiff: line 72) redirect https://imagej.net/TIFF - permanently to https://imagej.net/formats/tiff (users/imagej/managing-memory: line 65) ok https://imagej.net/ij/docs/menus/edit.html#options ( formats/tiff: line 72) ok https://imagej.net/ij/developer/source/ij/io/TiffDecoder.java.html (users/imagej/index: line 4) ok https://imagej.net/ij/index.html (users/imagej/installing: line 13) ok https://imagej.net/ij/download.html ( about/index: line 64) ok https://imagej.net/ij/list.html (formats/gatan-digital-micrograph: line 26) ok https://imagej.net/ij/plugins/DM3_Reader.html ( formats/gif: line 27) ok https://imagej.net/ij/plugins/agr.html ( formats/avi: line 27) ok https://imagej.net/ij/plugins/avi-reader.html ( formats/avi: line 28) ok https://imagej.net/ij/plugins/avi.html (formats/bio-rad-pic: line 27) ok https://imagej.net/ij/plugins/biorad.html (formats/windows-bitmap: line 26) ok https://imagej.net/ij/plugins/bmp-writer.html (formats/bruker-mri: line 24) ok https://imagej.net/ij/plugins/bruker.html ( formats/eps: line 27) ok https://imagej.net/ij/plugins/eps-writer.html ( formats/gif: line 28) ok https://imagej.net/ij/plugins/gif-stack-writer.html ( formats/iplab: line 27) ok https://imagej.net/ij/plugins/iplab-reader.html (formats/zeiss-lsm: line 28) ok https://imagej.net/ij/plugins/lsm-reader.html ( formats/png: line 27) ok https://imagej.net/ij/plugins/png-writer.html (formats/deltavision: line 29) ok https://imagej.net/ij/plugins/track/delta.html (developers/python-dev: line 25) ok https://imagej.net/libs/scifio (users/imagej/index: line 29) ok https://imagej.net/plugins/view5d (developers/python-dev: line 25) ok https://imagej.net/software/imagej2 ( users/itk/index: line 4) ok https://itk.org/ (formats/imspector-obf: line 31) ok https://imspectordocs.readthedocs.io/en/latest/fileformat.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DataTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DataTools.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DateTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DateTools.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DebugTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DebugTools.html (developers/components: line 187) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/reader-guide: line 146) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html#getMappedId-java.lang.String- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/in-memory: line 4) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html#mapFile-java.lang.String-loci.common.IRandomAccess- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/reader-guide: line 146) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Location.html#mapId-java.lang.String-java.lang.String- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Log4jTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Log4jTools.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/LogbackTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/LogbackTools.html (developers/components: line 187) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/RandomAccessInputStream.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/RandomAccessInputStream.html (developers/components: line 187) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/RandomAccessOutputStream.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/RandomAccessOutputStream.html (developers/service: line 37) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/services/Service.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/services/Service.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/xml/XMLTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/xml/XMLTools.html (developers/service: line 97) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/services/ServiceFactory.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/services/ServiceFactory.html (developers/file-reader: line 83) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/file-reader: line 83) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html#value-ome.units.unit.Unit- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/matlab-dev: line 203) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataRetrieve.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataRetrieve.html (developers/matlab-dev: line 311) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataStore.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataStore.html ( formats/jpx: line 9) ok https://jpeg.org/jpeg2000/ (developers/java-library: line 164) ok https://javaee.github.io/jaxb-v2/ (developers/java-library: line 107) ok https://junit.org/junit4/ ( formats/dicom: line 35) ok https://learn.canceridc.dev/data/downloading-data (developers/components: line 96) ok https://libjpeg-turbo.org (users/ome-server/index: line 17) broken https://downloads.openmicroscopy.org/ome/2.6.1/ - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /ome/2.6.1/ (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0d25e0>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/ome-server/index: line 117) broken https://downloads.openmicroscopy.org/ome/code/BioFormats.pm - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /ome/code/BioFormats.pm (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aaa30>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) (users/ome-server/index: line 119) broken https://downloads.openmicroscopy.org/ome/code/omeis.c - HTTPSConnectionPool(host='downloads.openmicroscopy.org', port=443): Max retries exceeded with url: /ome/code/omeis.c (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f3d0b5d30>, 'Connection to downloads.openmicroscopy.org timed out. (connect timeout=30)')) ( about/index: line 66) ok https://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy (developers/java-library: line 227) ok https://logback.qos.ch (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/java-opts-file.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/java-opts-file.html (users/visbio/index: line 4) ok https://loci.wisc.edu/visbio/ ( about/index: line 142) ok https://loci.wisc.edu/bio-formats/ (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html (developers/matlab-dev: line 29) redirect https://mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html - permanently to https://www.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html (users/matlab/index: line 15) redirect https://mathworks.com/matlabcentral/answers/index - permanently to https://www.mathworks.com/matlabcentral/answers/index (developers/matlab-dev: line 36) redirect https://mathworks.com/help/matlab/ref/prefdir.html - permanently to https://www.mathworks.com/help/matlab/ref/prefdir.html (users/micromanager/index: line 60) ok https://micro-manager.org/Micro-Manager_User's_Guide#files-on-disk (users/micromanager/index: line 4) ok https://micro-manager.org (formats/micro-manager: line 26) ok https://micro-manager.org/ (users/mipav/index: line 4) ok https://mipav.cit.nih.gov/ (developers/java-library: line 146) ok https://min.io ( formats/avi: line 68) redirect https://msdn.microsoft.com/en-us/library/ms779636.aspx - permanently to https://learn.microsoft.com/en-us/previous-versions//ms779636(v=vs.85)?redirectedfrom=MSDN ( about/whats-new: line 3511) ok https://ome-model.readthedocs.io/en/stable/ (users/octave/index: line 4) ok https://octave.org ( developers/wsi: line 81) redirect https://ome-model.readthedocs.io/en/stable//omero-pyramid/index.html - with Found to https://ome-model.readthedocs.io/en/stable/omero-pyramid/index.html ( about/whats-new: line 3344) redirect https://ome-model.readthedocs.io/en/stable//schemas/january-2015.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/january-2015.html ( developers/wsi: line 57) ok https://ome-model.readthedocs.io/en/stable/ome-tiff/specification.html (formats/ome-tiff: line 7) ok https://ome-model.readthedocs.io/en/stable/ome-tiff/index.html ( formats/ome-xml: line 7) ok https://ome-model.readthedocs.io/en/stable/ome-xml/index.html ( about/index: line 168) ok https://ome-model.readthedocs.io/en/stable/ome-xml/java-library.html ( about/index: line 158) ok https://ome-model.readthedocs.io/en/stable/ome-xml ( about/whats-new: line 2533) ok https://ome-model.readthedocs.io/en/stable/schemas/june-2016-2.html ( about/whats-new: line 2957) ok https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html (formats/aperio-svs-tiff: line 26) ok https://openslide.org (formats/hamamatsu-vms: line 33) ok https://openslide.org/Hamamatsu%20format/ ( formats/trestle: line 32) ok https://openslide.org/Trestle%20format/ (formats/bio-rad-gel: line 64) ok https://pypi.org/project/biorad1sc-reader/ (developers/python-dev: line 25) ok https://pypi.org/project/pyimagej (developers/python-dev: line 51) ok https://pypi.org/project/python-bioformats (users/imagej/load-images: line 79) ok https://scif.io/images/ (users/qupath/index: line 4) ok https://qupath.github.io/ ( formats/dicom: line 35) ok https://portal.imaging.datacommons.cancer.gov/ ( about/index: line 87) ok https://semver.org (developers/java-library: line 53) ok https://sissource.ethz.ch/sispub/base/ (developers/java-library: line 52) ok https://spdx.org/licenses/Apache-2.0.html (developers/java-library: line 64) ok https://spdx.org/licenses/BSD-2-Clause.html (developers/java-library: line 148) ok https://spdx.org/licenses/AGPL-3.0-only.html (developers/java-library: line 79) ok https://spdx.org/licenses/BSD-3-Clause.html (developers/java-library: line 205) ok https://spdx.org/licenses/EPL-1.0.html (developers/java-library: line 109) ok https://spdx.org/licenses/CPL-1.0.html (developers/java-library: line 184) ok https://spdx.org/licenses/GPL-2.0.html (developers/java-library: line 127) ok https://spdx.org/licenses/MIT.html (formats/quicktime-movie: line 27) redirect https://support.apple.com/downloads/quicktime - with Found to https://support.apple.com/en-us/docs (developers/java-library: line 161) ok https://square.github.io/okio/ (developers/java-library: line 158) ok https://square.github.io/okhttp/ (formats/quicktime-movie: line 74) redirect https://support.apple.com/quicktime - permanently to https://support.apple.com/guide/quicktime-player/welcome/mac (developers/java-library: line 128) ok https://testng.org/ (developers/index: line 76) ok https://trello.com/b/4EXb35xQ/getting-started (developers/matlab-dev: line 75) ok https://uk.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html (formats/zeiss-lsm: line 64) ok https://svi.nl/HomePage (developers/matlab-dev: line 77) ok https://uk.mathworks.com/matlabcentral/answers/92813-how-do-i-increase-the-heap-space-for-the-java-vm-in-matlab-6-0-r12-and-later-versions ( about/index: line 16) ok https://uw-loci.github.io/oss (developers/non-java-code: line 11) ok https://uw-loci.github.io/interfacing-non-java-code ( about/index: line 130) ok https://uw-loci.github.io/why-java (developers/java-library: line 50) redirect https://unlimited.ethz.ch/display/JHDF/ - with Found to https://unlimited.ethz.ch/spaces/JHDF/overview (formats/amersham-biosciences-gel: line 53) ok https://web.archive.org/web/20231204123656/https://www.awaresystems.be/imaging/tiff/tifftags/docs/gel.html ( formats/tiff: line 34) ok https://web.archive.org/web/20240329145220/https://www.awaresystems.be/imaging/tiff.html ( formats/tiff: line 72) ok https://web.archive.org/web/20240702055230/https://www.awaresystems.be/imaging/tiff/faq.html#q3 ( formats/tiff: line 72) ok https://web.archive.org/web/20240706160214/https://www.awaresystems.be/imaging/tiff/bigtiff.html (developers/components: line 231) ok https://wiki.tcl-lang.org/page/Metakit/ ( formats/tiff: line 29) ok https://web.archive.org/web/20240706160214/https://www.awaresystems.be/imaging/tiff/bigtiff.html#samples ( formats/dicom: line 36) redirect https://wsi.orthanc-server.com/orthanc/app/explorer.html - permanently to https://orthanc.uclouvain.be/wsi/ (formats/khoros-viff-bitmap: line 11) ok https://www.accusoft.com/company/ (formats/vectra-qptiff: line 10) ok https://www.akoyabio.com (formats/pict-macintosh-picture: line 9) ok https://www.apple.com (formats/quicktime-movie: line 10) ok https://www.apple.com/ (formats/varian-fdf: line 11) redirect https://www.agilent.com/home - permanently to https://www.agilent.com (formats/becker-hickl-fifo: line 10) ok https://www.becker-hickl.com/ (formats/becker-hickl-fifo: line 28) ok https://www.becker-hickl.com/literature/handbooks/ (formats/alicona-3d: line 10) ok https://www.alicona.com/ (formats/becker-hickl-spcimage: line 30) ok https://www.becker-hickl.com/products/spcimage/ (users/focalpoint/index: line 4) ok https://www.bioinformatics.babraham.ac.uk/projects/focalpoint/ (formats/iplab-mac: line 10) ok https://www.biovis.com/ (users/cellprofiler/index: line 4) ok https://www.broadinstitute.org/imaging ( formats/iplab: line 11) redirect https://www.biovis.com/iplab.htm - permanently to https://www.biovis.com/manufacturers.html#legacy.html (formats/prairie-tech-tiff: line 9) redirect https://www.bruker.com/products/fluorescence-microscopes/ultima-multiphoton-microscopy/ultima-in-vitro/overview.html - permanently to https://www.bruker.com/en/products-and-solutions/fluorescence-microscopy/multiphoton-microscopes/ultima-in-vitro.html (formats/bruker-mri: line 7) redirect https://www.bruker.com/ - permanently to https://www.bruker.com/en.html ( formats/mrc: line 61) ok https://www.ccpem.ac.uk/mrc_format/mrc2014.php#note8 ( formats/mrc: line 12) ok https://www.ccpem.ac.uk/mrc_format/mrc_format.php ( formats/dicom: line 33) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMImageSamples ( formats/dicom: line 27) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMFileConvertorsAndViewers (formats/kodak-bip: line 9) ok https://www.carestream.com/en/us ( formats/dicom: line 28) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMToolkits ( formats/dicom: line 72) ok https://www.dicomstandard.org/ ( formats/dicom: line 9) ok https://www.dicomstandard.org/dsc/ ( formats/dicom: line 41) ok https://www.dicomstandard.org/current/ ( formats/imacon: line 10) ok https://www.hasselblad.com/ (formats/hamamatsu-ndpi: line 29) ok https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html (formats/hitachi-s-4800: line 9) ok https://www.hitachi-hightech.com/file/us/pdf/library/technical/Hitachi_4800_STEM.pdf ( about/index: line 84) ok https://www.ietf.org/rfc/rfc2119.txt (formats/3i-slidebook: line 52) ok https://www.intelligent-imaging.com/slidebook ( about/whats-new: line 3281) ok https://www.intelligent-imaging.com (formats/hamamatsu-aquacosmos-naf: line 9) redirect https://www.hamamatsu.com/ - with Found to https://www.hamamatsu.com/jp/en.html (formats/3i-slidebook-7: line 27) ok https://www.intelligent-imaging.com/slidebook/ (formats/canon-dng: line 26) ok https://www.irfanview.com/ ( formats/jpeg: line 56) redirect https://www.jpeg.org/jpeg/index.html - permanently to https://jpeg.org/jpeg/index.html (formats/ionpath-mibi: line 9) ok https://www.ionpath.com/ ( formats/jpk: line 9) redirect https://www.jpk.com - permanently to https://www.bruker.com/de/products-and-solutions/microscopes/bioafm.html?utm_source=JPK (users/knime/index: line 4) ok https://www.knime.com/ ( formats/quesant: line 11) redirect https://www.kla-tencor.com/ - permanently to https://www.kla.com/ ( formats/jeol: line 10) redirect https://www.jeol.co.jp/en/ - permanently to https://www.jeol.com/ (formats/leica-lcs-lei: line 9) ok https://www.leica-microsystems.com/ (formats/leica-lif: line 27) ok https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/ (formats/minolta-mrw: line 9) redirect https://www.konicaminolta.com/uk-en/index.html - permanently to https://www.konicaminolta.co.uk/en-gb (formats/lambert-instruments-flim: line 9) redirect https://www.lambertinstruments.com - permanently to https://lambertinstruments.com/ (formats/aperio-afi: line 10) ok https://www.leicabiosystems.com/ (formats/aperio-afi: line 49) ok https://www.leicabiosystems.com/digital-pathology/manage/aperio-imagescope/ (users/graphic-con/index: line 4) ok https://www.lemkesoft.de/en/image-editing-slideshow-browser-batch-conversion-metadata-and-more-on-your-mac/ (users/matlab/index: line 4) ok https://www.mathworks.com/products/matlab.html ( formats/tiff: line 33) ok https://www.loc.gov/preservation/digital/formats/fdd/fdd000022.shtml ( about/whats-new: line 55) ok https://www.mail-archive.com/tiff@lists.osgeo.org/msg00421.html (developers/java-library: line 206) ok https://www.mchange.com/projects/mchange-commons-java/ (developers/java-library: line 203) ok https://www.mchange.com/projects/c3p0/ (formats/amnis-flowsight: line 10) -ignored- https://www.merckmillipore.com: service unavailable ( formats/avi: line 9) ok https://www.microsoft.com/ (formats/mikroscan-tiff: line 10) ok https://www.mikroscan.com/ (formats/metamorph-75-tiff: line 10) ok https://www.moleculardevices.com/ (formats/metamorph-stack-stk: line 60) redirect https://www.moleculardevices.com/systems/metamorph-research-imaging/metamorph-microscopy-automation-and-image-analysis-software - permanently to https://www.moleculardevices.com/products/cellular-imaging-systems/high-content-analysis/metamorph-microscopy (formats/animated-png: line 27) ok https://www.mozilla.org/en-US/firefox ( about/whats-new: line 363) redirect https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489422/ - permanently to https://pmc.ncbi.nlm.nih.gov/articles/PMC6489422/ ( formats/nifti: line 9) ok https://www.nih.gov/ ( about/index: line 36) redirect https://www.ncbi.nlm.nih.gov/pubmed/20513764 - permanently to https://pubmed.ncbi.nlm.nih.gov/20513764/ (formats/nikon-nis-elements-nd2: line 9) redirect https://www.nikonusa.com/en/index.page - permanently to https://www.nikonusa.com (formats/nikon-nis-elements-nd2: line 26) redirect https://www.nikoninstruments.com/Products/Software/NIS-Elements-Advanced-Research/NIS-Elements-Viewer - permanently to https://www.microscope.healthcare.nikon.com/products/software/nis-elements/nis-elements-advanced-research ( formats/nifti: line 28) ok https://www.nitrc.org/docman/view.php/26/204/TheNIfTI ( users/idl/index: line 4) ok https://www.nv5geospatialsoftware.com/Products/IDL (formats/cellsens-vsi: line 9) ok https://www.olympus-global.com (formats/olympus-sis-tiff: line 9) ok https://www.olympus-sis.com/ ( about/whats-new: line 2270) ok https://www.openmicroscopy.org (developers/matlab-dev: line 80) ok https://www.openmicroscopy.org/2015/04/28/omero-bio-formats-5-1-1.html (users/comlinetools/mkfake: line 19) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/SPW_xsd.html#PlateAcquisition_ID (metadata-summary: line 969) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#AnnotationRef_ID (metadata-summary: line 974) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Description (formats/zeiss-czi: line 60) ok https://www.microsoft.com/en-us/download/details.aspx?id=48145 (formats/olympus-fluoview-fv1000: line 26) ok https://www.olympus-lifescience.com/en/ (metadata-summary: line 979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_ID (metadata-summary: line 984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Namespace (metadata-summary: line 2094) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData (metadata-summary: line 2099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_BigEndian (metadata-summary: line 964) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Arc_Type (metadata-summary: line 2109) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Compression (metadata-summary: line 989) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BooleanAnnotation_Value (metadata-summary: line 2104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Length (metadata-summary: line 994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_AcquisitionMode (metadata-summary: line 1004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Color (metadata-summary: line 1009) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ContrastMethod (metadata-summary: line 1014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_EmissionWavelength (metadata-summary: line 1019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ExcitationWavelength (metadata-summary: line 1029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Fluor (metadata-summary: line 1034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ID (metadata-summary: line 1039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_IlluminationType (metadata-summary: line 1064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Name (metadata-summary: line 1059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_NDFilter (metadata-summary: line 1069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PinholeSize (metadata-summary: line 1074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PockelCellSetting (metadata-summary: line 1079) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_SamplesPerPixel (metadata-summary: line 1104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#CommentAnnotation_Value (metadata-summary: line 1114) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Description (metadata-summary: line 2839) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DatasetRef_ID (metadata-summary: line 1129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_ID (metadata-summary: line 1139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Name (metadata-summary: line 1204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Binning (metadata-summary: line 1214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ID (metadata-summary: line 1209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Gain (metadata-summary: line 1219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Offset (metadata-summary: line 1224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ReadOutRate (metadata-summary: line 1229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Voltage (metadata-summary: line 1154) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Gain (metadata-summary: line 1144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_AmplificationGain (metadata-summary: line 1179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Offset (metadata-summary: line 1159) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_ID (metadata-summary: line 1189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Type (metadata-summary: line 1194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Voltage (metadata-summary: line 1199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Zoom (metadata-summary: line 1574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DichroicRef_ID (metadata-summary: line 1284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DoubleAnnotation_Value (metadata-summary: line 1239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dichroic_ID (metadata-summary: line 1324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusX (metadata-summary: line 1329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusY (metadata-summary: line 1374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_X (metadata-summary: line 1389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Description (metadata-summary: line 1379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_Y (metadata-summary: line 1664) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimentRef_ID (metadata-summary: line 1399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_ID (metadata-summary: line 1454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Description (metadata-summary: line 1404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Type (metadata-summary: line 1119) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroupRef_ID (metadata-summary: line 1464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_ID (metadata-summary: line 1474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Name (metadata-summary: line 1124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterRef_ID (metadata-summary: line 1414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Email (metadata-summary: line 1419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_FirstName (metadata-summary: line 1424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_ID (metadata-summary: line 1434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_LastName (metadata-summary: line 1429) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Institution (metadata-summary: line 1439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_MiddleName (metadata-summary: line 1444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_UserName (metadata-summary: line 1579) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterRef_ID (metadata-summary: line 1509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filament_Type (metadata-summary: line 1024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSetRef_ID (metadata-summary: line 1539) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_FilterWheel (metadata-summary: line 1589) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSet_ID (metadata-summary: line 1544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_ID (metadata-summary: line 1619) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Description (metadata-summary: line 1569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_Type (metadata-summary: line 1624) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FolderRef_ID (metadata-summary: line 1639) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Name (metadata-summary: line 1629) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_ID (metadata-summary: line 1134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImageRef_ID (metadata-summary: line 1659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Description (metadata-summary: line 1649) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_AcquisitionDate (metadata-summary: line 1694) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Name (metadata-summary: line 1704) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_AirPressure (metadata-summary: line 1679) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_ID (metadata-summary: line 1714) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Humidity (metadata-summary: line 1719) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Temperature (metadata-summary: line 1709) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_CO2Percent (metadata-summary: line 1729) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Instrument_ID (metadata-summary: line 1684) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#InstrumentRef_ID (metadata-summary: line 1809) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_X (metadata-summary: line 1819) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_FrequencyMultiplication (metadata-summary: line 1814) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_Y (metadata-summary: line 1849) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_PockelCell (metadata-summary: line 1829) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_LaserMedium (metadata-summary: line 1859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Pulse (metadata-summary: line 1879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Tuneable (metadata-summary: line 1869) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_RepetitionRate (metadata-summary: line 1884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Type (metadata-summary: line 1469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Leader_ID (metadata-summary: line 1889) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Wavelength (metadata-summary: line 1044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Attenuation (metadata-summary: line 1049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_ID (metadata-summary: line 1054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Wavelength (metadata-summary: line 954) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_Power (metadata-summary: line 934) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_ID (metadata-summary: line 1979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerEnd (metadata-summary: line 1984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerStart (metadata-summary: line 2029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X1 (metadata-summary: line 2039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y1 (metadata-summary: line 2034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X2 ( about/index: line 58) broken https://lists.openmicroscopy.org.uk/pipermail/ome-devel - HTTPSConnectionPool(host='lists.openmicroscopy.org.uk', port=443): Max retries exceeded with url: /pipermail/ome-devel (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa220>, 'Connection to lists.openmicroscopy.org.uk timed out. (connect timeout=30)')) (metadata-summary: line 2044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y2 (metadata-summary: line 2089) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LongAnnotation_Value ( about/index: line 61) broken https://lists.openmicroscopy.org.uk/pipermail/ome-users - HTTPSConnectionPool(host='lists.openmicroscopy.org.uk', port=443): Max retries exceeded with url: /pipermail/ome-users (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f7f367aa0d0>, 'Connection to lists.openmicroscopy.org.uk timed out. (connect timeout=30)')) (metadata-summary: line 939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_LotNumber (metadata-summary: line 944) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Manufacturer (metadata-summary: line 949) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Model (metadata-summary: line 959) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_SerialNumber (metadata-summary: line 2134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Height (metadata-summary: line 2189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Width (metadata-summary: line 1689) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulationRef_ID (metadata-summary: line 2194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_X (metadata-summary: line 2199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Y (metadata-summary: line 2209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_ID (metadata-summary: line 2219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_Type (metadata-summary: line 2259) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Microscope_Type (metadata-summary: line 2329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_CorrectionCollar (metadata-summary: line 2334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_ID (metadata-summary: line 2339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_Medium (metadata-summary: line 2344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex (metadata-summary: line 2269) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_CalibratedMagnification (metadata-summary: line 2279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_ID (metadata-summary: line 2274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Correction (metadata-summary: line 2284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Immersion (metadata-summary: line 2289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Iris (metadata-summary: line 2314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_NominalMagnification (metadata-summary: line 2294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_LensNA (metadata-summary: line 2324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_WorkingDistance (metadata-summary: line 2354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_BigEndian (metadata-summary: line 2359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_DimensionOrder (metadata-summary: line 2369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Interleaved (metadata-summary: line 2364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_ID (metadata-summary: line 2374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeX (metadata-summary: line 2379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeY (metadata-summary: line 2384) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeZ (metadata-summary: line 2394) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeC (metadata-summary: line 2389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SignificantBits (metadata-summary: line 2399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeT (metadata-summary: line 2404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeX (metadata-summary: line 2409) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeY (metadata-summary: line 2414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeZ (metadata-summary: line 2419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_TimeIncrement (metadata-summary: line 2424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Type (metadata-summary: line 2444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_HashSHA1 (metadata-summary: line 2434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_DeltaT (metadata-summary: line 2439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_ExposureTime (metadata-summary: line 2449) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionX (metadata-summary: line 2454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionY (metadata-summary: line 2459) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionZ (metadata-summary: line 2544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Description (metadata-summary: line 2469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheT (metadata-summary: line 2464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheC (metadata-summary: line 2549) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_EndTime (metadata-summary: line 2474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheZ (metadata-summary: line 2554) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_ID (metadata-summary: line 2559) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_MaximumFieldCount (metadata-summary: line 2494) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Description (metadata-summary: line 2484) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ColumnNamingConvention (metadata-summary: line 2569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_StartTime (metadata-summary: line 2564) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Name (metadata-summary: line 2489) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Columns (metadata-summary: line 2499) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ExternalIdentifier (metadata-summary: line 2504) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ID (metadata-summary: line 2514) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_RowNamingConvention (metadata-summary: line 2509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Name (metadata-summary: line 2519) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Rows (metadata-summary: line 2524) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Status (metadata-summary: line 2534) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginY (metadata-summary: line 2529) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginX (metadata-summary: line 2654) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_X (metadata-summary: line 2659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_Y (metadata-summary: line 2844) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Description (metadata-summary: line 2699) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polygon_Points (metadata-summary: line 2784) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerStart (metadata-summary: line 2779) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerEnd (metadata-summary: line 2859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_ID (metadata-summary: line 2789) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_Points (metadata-summary: line 2874) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Description (metadata-summary: line 2864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Name (metadata-summary: line 1644) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROIRef_ID (metadata-summary: line 2894) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Description (metadata-summary: line 1864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pump_ID (metadata-summary: line 3244) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ReagentRef_ID (metadata-summary: line 2879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_ID (metadata-summary: line 2884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Name (metadata-summary: line 2899) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ID (metadata-summary: line 2904) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Name (metadata-summary: line 2909) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ReagentIdentifier (metadata-summary: line 3014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Description (metadata-summary: line 2939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Height (metadata-summary: line 2994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Width (metadata-summary: line 2999) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_X (metadata-summary: line 3019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ID (metadata-summary: line 3004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Y (metadata-summary: line 3024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Name (metadata-summary: line 3034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolDescription (metadata-summary: line 3044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetDescription (metadata-summary: line 3039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolIdentifier (metadata-summary: line 3049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetIdentifier (metadata-summary: line 3029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Screen_PlateRef_ID (metadata-summary: line 3054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Type (metadata-summary: line 1289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillColor (metadata-summary: line 1294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillRule (metadata-summary: line 1299) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontFamily (metadata-summary: line 1304) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontSize (metadata-summary: line 1309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontStyle (metadata-summary: line 1314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_ID (metadata-summary: line 1319) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Locked (metadata-summary: line 1334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeColor (metadata-summary: line 1339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeDashArray (metadata-summary: line 1344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeWidth (metadata-summary: line 1349) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Text (metadata-summary: line 1354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheC (metadata-summary: line 1369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Transform (metadata-summary: line 1359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheT (metadata-summary: line 1364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheZ (metadata-summary: line 3059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Name (metadata-summary: line 3064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_X (metadata-summary: line 3069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Y (metadata-summary: line 3099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TagAnnotation_Value (metadata-summary: line 3074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Z (metadata-summary: line 3124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TermAnnotation_Value (metadata-summary: line 3129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstC (metadata-summary: line 3134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstT (metadata-summary: line 3139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstZ (metadata-summary: line 3144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_IFD (metadata-summary: line 3149) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_PlaneCount (metadata-summary: line 3174) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TimestampAnnotation_Value (metadata-summary: line 3179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutIn (metadata-summary: line 3204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_TiffData_UUID_FileName (metadata-summary: line 3184) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutInTolerance (metadata-summary: line 3189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOut (metadata-summary: line 3194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOutTolerance (metadata-summary: line 3209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#UniversallyUniqueIdentifier (metadata-summary: line 3199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_Transmittance (metadata-summary: line 3274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Index (metadata-summary: line 2574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSampleRef_ID (metadata-summary: line 3264) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_ID (metadata-summary: line 3279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionX (metadata-summary: line 3284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionY (metadata-summary: line 3224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Column (metadata-summary: line 3289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Timepoint (metadata-summary: line 3219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Color (metadata-summary: line 3229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalDescription (metadata-summary: line 3234) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalIdentifier ( about/index: line 38) ok https://www.openmicroscopy.org/citing-ome (formats/ome-tiff: line 57) ok https://www.openmicroscopy.org/commercial-partners/#partnerships ( about/index: line 24) ok https://www.openmicroscopy.org/licensing ( about/index: line 72) ok https://www.openmicroscopy.org/omero/ ( about/whats-new: line 887) ok https://www.openmicroscopy.org/security/advisories/2021-SV4/ ( about/index: line 56) ok https://www.openmicroscopy.org/support/ (metadata-summary: line 3239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ID (metadata-summary: line 3249) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Row (metadata-summary: line 3309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#XMLAnnotation_Value (metadata-summary: line 3254) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Type (formats/mias-maia-scientific: line 9) ok https://www.selectscience.net/company/maia-scientific ( formats/nef: line 56) ok https://www.outbackphoto.com/workshop/NEF_conversion/nefconversion.html ( formats/nef: line 27) ok https://www.outbackphoto.com/workshop/NEF_conversion/neffile1.zip (developers/logging: line 7) ok https://www.slf4j.org/manual.html#libraries (formats/princeton-instruments-spe: line 9) redirect https://www.princetoninstruments.com - permanently to https://www.teledynevisionsolutions.com/company/about-teledyne-vision-solutions/teledyne-princeton-instruments/ (formats/tecan-spark-cyto-workspace: line 10) ok https://www.tecan.com/ ( formats/ecat7: line 9) redirect https://www.siemens.com/global/en/home.html - with Found to https://www.siemens.com/global/en.html ( formats/gif: line 33) ok https://www.w3.org/Graphics/GIF/spec-gif89a.txt ( formats/i2i: line 9) ok https://www.umassmed.edu/ ( formats/seiko: line 10) redirect https://www.seiko.co.jp/en - permanently to https://www.seiko.co.jp:443/en/ (formats/zeiss-axiovision-zvi: line 9) redirect https://www.zeiss.com/microscopy - permanently to https://www.zeiss.com/microscopy/en/home.html?vaURL=www.zeiss.com/microscopy (formats/bio-rad-pic: line 11) redirect https://www.zeiss.com - permanently to https://www.zeiss.com/corporate/en/home.html (formats/zeiss-axiovision-tiff: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html (formats/zeiss-axiovision-zvi: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html ( formats/gif: line 11) ok https://www.unisys.com/ (formats/zeiss-czi: line 7) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html ( formats/mrc: line 11) ok https://www2.mrc-lmb.cam.ac.uk/ (developers/java-library: line 191) redirect https://www.unidata.ucar.edu/software/netcdf-java/v4.6/reference/httpservices.html - with Found to https://docs.unidata.ucar.edu/netcdf-java/4.6/userguide/index.html ( about/whats-new: line 861) ok https://zenodo.org/ (formats/cellvoyager: line 10) ok https://www.yokogawa.com/ (formats/pcx-pc-paintbrush: line 49) ok https://www.zeiss.com/microscopy/en/service-support/downloads.html (about/bug-reporting: line 64) redirect https://zenodo.org/communities/bio-formats - with Found to https://zenodo.org/communities/bio-formats/records (formats/zeiss-axiovision-zvi: line 67) ok https://www.zeiss.com/microscopy/en/service-support/support/discontinued-products.html build finished with problems. [ERROR] Command execution failed. org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal (DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute (DefaultExecutor.java:166) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:804) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:751) at org.codehaus.mojo.exec.ExecMojo.execute (ExecMojo.java:313) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289) at org.apache.maven.cli.MavenCli.main (MavenCli.java:193) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:566) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347) [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:15 h [INFO] Finished at: 2024-10-26T02:35:47+01:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) on project bio-formats-documentation: Command execution failed.: Process exited with an error: 1 (Exit value: 1) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Build step 'Execute shell' marked build as failure Finished: FAILURE