Started by upstream project "Trigger" build number 82 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-linkcheck [BIOFORMATS-linkcheck] $ /bin/bash -xe /tmp/jenkins13422170677433592470.sh + TAG=snoopycrimecop/bioformats:merge_ci + sudo docker run --rm -w /bio-formats-build/bio-formats-documentation --entrypoint mvn snoopycrimecop/bioformats:merge_ci test -DskipSphinxTests=false -Dome-model.uri=/bio-formats-build/ome-model/docs/sphinx/target/sphinx/html [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:bio-formats-documentation:jar:8.0.0-SNAPSHOT [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.codehaus.mojo:exec-maven-plugin @ line 369, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [WARNING] The project ome:bio-formats-documentation:jar:8.0.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [INFO] [INFO] -------------------< ome:bio-formats-documentation >-------------------- [INFO] Building Bio-Formats documentation 8.0.0-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-configuration) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 114 resources [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:parse-version (parse-version) @ bio-formats-documentation --- [INFO] [INFO] --- maven-dependency-plugin:3.1.1:unpack (unpack-ome-xml) @ bio-formats-documentation --- [INFO] Configured Artifact: org.openmicroscopy:ome-xml:6.3.7-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-api:sources:8.0.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-bsd:sources:8.0.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-gpl:sources:8.0.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:bio-formats-examples:sources:8.0.0-SNAPSHOT:jar [INFO] Unpacking /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-gpl with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/bio-formats-examples/8.0.0-SNAPSHOT/bio-formats-examples-8.0.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes "" [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 10 resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-documentation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (gen-meta-support) @ bio-formats-documentation --- Parsing AFIReader Parsing AIMReader Parsing AliconaReader Parsing AmiraReader Parsing AnalyzeReader Parsing APLReader Parsing ARFReader Parsing BaseZeissReader Parsing BDReader Parsing BioRadGelReader Parsing BioRadReader Parsing BioRadSCNReader Parsing BrukerReader Parsing BurleighReader Parsing CanonRawReader Parsing CellomicsReader Parsing CellSensReader Parsing CellVoyagerReader Parsing CellWorxReader Parsing ColumbusReader Parsing CV7000Reader Parsing DeltavisionReader Parsing DNGReader Parsing Ecat7Reader Parsing FEIReader Parsing FEITiffReader Parsing FlexReader Parsing FluoviewReader Parsing FujiReader Parsing FV1000Reader Parsing GatanDM2Reader Parsing GatanReader Parsing GelReader Parsing HamamatsuVMSReader Parsing HISReader Parsing HitachiReader Parsing HRDGDFReader Parsing I2IReader Parsing ImaconReader Parsing ImagicReader Parsing ImarisHDFReader Parsing ImarisReader Parsing ImarisTiffReader Parsing IMODReader Parsing ImprovisionTiffReader Parsing ImspectorReader Parsing InCell3000Reader Parsing InCellReader Parsing INRReader Parsing InveonReader Parsing IonpathMIBITiffReader Parsing IPLabReader Parsing IPWReader Parsing IvisionReader Parsing JEOLReader Parsing JPKReader Parsing JPXReader Parsing KhorosReader Parsing KodakReader Parsing L2DReader Parsing LeicaReader Parsing LeicaSCNReader Parsing LEOReader Parsing LiFlimReader Parsing LIFReader Parsing LIMReader Parsing LOFReader Parsing MetamorphReader Parsing MetamorphTiffReader Parsing MetaxpressTiffReader Parsing MIASReader Parsing MicroCTReader Parsing MikroscanTiffReader Parsing MINCReader Parsing MolecularImagingReader Parsing MRCReader Parsing MRWReader Parsing NAFReader Parsing ND2Reader Parsing NDPIReader Parsing NDPISReader Parsing NiftiReader Parsing NikonElementsTiffReader Parsing NikonReader Parsing NikonTiffReader Parsing OIRReader Parsing OlympusTileReader Parsing OpenlabRawReader Parsing OpenlabReader Parsing OperettaReader Parsing OxfordInstrumentsReader Parsing PCIReader Parsing PCORAWReader Parsing PDSReader Parsing PerkinElmerReader Parsing PhotoshopTiffReader Parsing PovrayReader Parsing PQBinReader Parsing PrairieReader Parsing PSDReader Parsing PyramidTiffReader Parsing QuesantReader Parsing RCPNLReader Parsing RHKReader Parsing SBIGReader Parsing ScanrReader Parsing SDTReader Parsing SeikoReader Parsing SEQReader Parsing SIFReader Parsing SimplePCITiffReader Parsing SISReader Parsing SlidebookReader Parsing SlidebookTiffReader Parsing SMCameraReader Parsing SPCReader Parsing SPEReader Parsing SpiderReader Parsing SVSReader Parsing TargaReader Parsing TCSReader Parsing TecanReader Parsing TillVisionReader Parsing TopometrixReader Parsing TrestleReader Parsing UBMReader Parsing UnisokuReader Parsing VarianFDFReader Parsing VectraReader Parsing VeecoReader Parsing VentanaReader Parsing VGSAMReader Parsing VisitechReader Parsing VolocityClippingReader Parsing VolocityReader Parsing WATOPReader Parsing XLEFReader Parsing ZeissCZIReader Parsing ZeissLMSReader Parsing ZeissLSMReader Parsing ZeissTIFFReader Parsing ZeissZVIReader Parsing APNGReader Parsing AVIReader Parsing BaseTiffReader Parsing BDVReader Parsing BIFormatReader Parsing BMPReader Parsing CellH5Reader Parsing DicomReader Parsing EPSReader Parsing FakeReader Parsing FilePatternReader Parsing FitsReader Parsing FlowSightReader Parsing GIFReader Parsing ICSReader Parsing IM3Reader Parsing ImageIOReader Parsing JPEG2000Reader Parsing JPEGReader Parsing KLBReader Parsing MicromanagerReader Parsing MinimalTiffReader Parsing MNGReader Parsing NRRDReader Parsing OBFReader Parsing OMETiffReader Parsing OMEXMLReader Parsing PCXReader Parsing PGMReader Parsing PictReader Parsing QTReader Parsing SlideBook7Reader Parsing TextReader Parsing TiffDelegateReader Parsing TiffJAIReader Parsing TiffReader Parsing TileJPEGReader Parsing ZipReader [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-structure-table) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-ratings) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-format-pages) @ bio-formats-documentation --- Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/3i-slidebook.rst: done. 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[INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /bio-formats-build/bio-formats-documentation/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats-documentation --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats-documentation --- [INFO] No tests to run. [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) @ bio-formats-documentation --- Running Sphinx v7.3.7 making output directory... done loading pickled environment... done /bio-formats-build/venv/lib/python3.9/site-packages/sphinx/builders/linkcheck.py:86: RemovedInSphinx80Warning: The default value for 'linkcheck_report_timeouts_as_broken' will change to False in Sphinx 8, meaning that request timeouts will be reported with a new 'timeout' status, instead of as 'broken'. This is intended to provide more detail as to the failure mode. See https://github.com/sphinx-doc/sphinx/issues/11868 for details. warnings.warn(deprecation_msg, RemovedInSphinx80Warning, stacklevel=1) building [mo]: targets for 0 po files that are out of date writing output... building [linkcheck]: targets for 423 source files that are out of date updating environment: 0 added, 344 changed, 0 removed reading sources... [ 0%] formats/3i-slidebook reading sources... 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(formats/bitplane-imaris: line 10) -ignored- https://imaris.oxinst.com/ (formats/bitplane-imaris: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java (formats/bitplane-imaris: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisTiffReader.java (formats/bitplane-imaris: line 36) -ignored- https://imaris.oxinst.com/support/imaris-file-format (formats/bruker-mri: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BrukerReader.java (formats/burleigh: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BurleighReader.java (formats/canon-dng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DNGReader.java ( formats/cellh5: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/CellH5Reader.java ( formats/cellh5: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/CellH5Writer.java (formats/cellomics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellomicsReader.java (formats/cellsens-vsi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellSensReader.java (formats/cellvoyager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellVoyagerReader.java ( formats/cv7000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CV7000Reader.java (formats/deltavision: line 10) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/microscopy (formats/deltavision: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java (formats/deltavision: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/RCPNLReader.java ( formats/dicom: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/DicomReader.java ( formats/dicom: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/DicomWriter.java ( formats/ecat7: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/Ecat7Reader.java ( formats/eps: line 9) -ignored- https://www.adobe.com/ ( formats/eps: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/EPSReader.java ( formats/eps: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/EPSWriter.java (formats/evotecperkinelmer-opera-flex: line 9) -ignored- https://www.perkinelmer.com/ (formats/evotecperkinelmer-opera-flex: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FlexReader.java ( formats/fei: line 9) -ignored- https://www.fei.com/home/ ( formats/fei: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEIReader.java (formats/fei-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEITiffReader.java ( formats/fits: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/FitsReader.java (formats/gatan-digital-micrograph: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanReader.java (formats/gatan-digital-micrograph-2: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanDM2Reader.java (formats/ge-microct: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MicroCTReader.java ( formats/gif: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/GIFReader.java (formats/hamamatsu-aquacosmos-naf: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NAFReader.java (formats/hamamatsu-his: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HISReader.java (formats/hamamatsu-ndpi: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NDPIReader.java (formats/hamamatsu-ndpi: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NDPISReader.java (formats/hamamatsu-vms: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HamamatsuVMSReader.java (formats/hitachi-s-4800: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HitachiReader.java ( formats/i2i: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/I2IReader.java ( formats/ics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/ICSReader.java ( formats/ics: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/ICSWriter.java ( formats/ics: line 28) -ignored- https://valelab4.ucsf.edu/~nstuurman/IJplugins/Ics_Opener.html ( formats/imacon: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImaconReader.java (formats/imagepro-sequence: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SEQReader.java (formats/imagepro-workspace: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPWReader.java ( formats/imagic: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImagicReader.java ( formats/imod: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IMODReader.java (formats/improvision-openlab-liff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabReader.java (formats/improvision-openlab-raw: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabRawReader.java (formats/improvision-tiff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImprovisionTiffReader.java (formats/imspector-obf: line 9) -ignored- https://imspector.mpibpc.mpg.de (formats/imspector-obf: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OBFReader.java (formats/incell-1000: line 11) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/high-content-analysis (formats/incell-3000: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InCell3000Reader.java ( formats/inr: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/INRReader.java ( formats/inveon: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InveonReader.java (formats/ionpath-mibi: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IonpathMIBITiffReader.java ( formats/iplab: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPLabReader.java (formats/iplab-mac: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IvisionReader.java ( formats/jeol: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JEOLReader.java ( formats/jpeg: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEGReader.java ( formats/jpeg: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEGWriter.java (formats/jpeg-2000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEG2000Reader.java (formats/jpeg-2000: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEG2000Writer.java ( formats/jpk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPKReader.java ( formats/jpx: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPXReader.java (formats/keller-lab-block: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/KLBReader.java (formats/khoros-viff-bitmap: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KhorosReader.java (formats/kodak-bip: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KodakReader.java (formats/lambert-instruments-flim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LiFlimReader.java (formats/lavision-imspector: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImspectorReader.java (formats/leica-lcs-lei: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaReader.java (formats/leica-lif: line 68) -ignored- https://www.fei.com/software/amira-avizo/ (formats/leica-lof: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LOFReader.java (formats/leica-scn: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java (formats/leica-xlef: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/XLEFReader.java ( formats/leo: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LEOReader.java (formats/li-cor-l2d: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/L2DReader.java ( formats/lim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LIMReader.java ( formats/lim: line 55) -ignored- https://www.nis-elements.com/ (formats/metamorph-75-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphTiffReader.java (formats/metamorph-stack-stk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphReader.java (formats/mias-maia-scientific: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MIASReader.java (formats/micro-manager: line 9) -ignored- https://valelab.ucsf.edu/ (formats/micro-manager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MicromanagerReader.java (formats/mikroscan-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MikroscanTiffReader.java (formats/minc-mri: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MINCReader.java (formats/minolta-mrw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRWReader.java ( formats/mng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MNGReader.java (formats/molecular-imaging: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MolecularImagingReader.java ( formats/mrc: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRCReader.java ( formats/mrc: line 61) -ignored- https://bio3d.colorado.edu/imod/doc/mrc_format.txt ( formats/nef: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonReader.java ( formats/nifti: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NiftiReader.java (formats/nikon-elements-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonElementsTiffReader.java (formats/nikon-ez-c1-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonTiffReader.java (formats/nikon-nis-elements-nd2: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ND2Reader.java ( formats/nrrd: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/NRRDReader.java (formats/olympus-cellrapl: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/APLReader.java (formats/olympus-fluoview-fv1000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FV1000Reader.java (formats/olympus-oir: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OIRReader.java (formats/olympus-omp2info: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java (formats/olympus-scanr: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ScanrReader.java (formats/olympus-sis-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SISReader.java (formats/ome-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMETiffReader.java (formats/ome-tiff: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMETiffWriter.java ( formats/ome-xml: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMEXMLReader.java ( formats/ome-xml: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMEXMLWriter.java (formats/omero-pyramid: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/TiffReader.java (formats/oxford-instruments: line 10) -ignored- https://www.oxinst.com/ (formats/oxford-instruments: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OxfordInstrumentsReader.java ( formats/pcoraw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PCORAWReader.java (formats/pcx-pc-paintbrush: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PCXReader.java (formats/perkin-elmer-densitometer: line 9) -ignored- https://www.perkinelmer.com (formats/perkin-elmer-densitometer: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PDSReader.java (formats/perkinelmer-columbus: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ColumbusReader.java (formats/perkinelmer-nuance: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/IM3Reader.java (formats/perkinelmer-operetta: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OperettaReader.java (formats/perkinelmer-ultraview: line 57) -ignored- https://www.perkinelmer.com/lab-solutions/resources/PDFs/LST/Brochures/BRO_UltraVIEW-VoX-Product-Brochure.pdf ( formats/pgm: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PGMReader.java (formats/photoshop-psd: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PSDReader.java (formats/photoshop-tiff: line 9) -ignored- https://www.adobe.com (formats/photoshop-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PhotoshopTiffReader.java (formats/picoquant-bin: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PQBinReader.java (formats/pict-macintosh-picture: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PictReader.java (formats/prairie-tech-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PrairieReader.java (formats/princeton-instruments-spe: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SPEReader.java ( formats/quesant: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/QuesantReader.java (formats/quicktime-movie: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/QTReader.java (formats/quicktime-movie: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/QTWriter.java ( formats/rhk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/RHKReader.java ( formats/sbig: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SBIGReader.java ( formats/seiko: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SeikoReader.java (formats/simplepci-hcimage: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PCIReader.java (formats/simplepci-hcimage-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SimplePCITiffReader.java (formats/sm-camera: line 18) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SMCameraReader.java ( 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redirect http://www.thermofisher.com/ - permanently to https://www.thermofisher.com/uk/en/home.html (users/qu-matlab/index: line 13) redirect http://www.scs2.net/home/index.php?option=com_content&view=article&id=46%3Aqu-for-matlab&catid=34%3Aqu&Itemid=55&limitstart=3 - permanently to https://www.scs2.net/next/index.php?id=120 (users/visad/index: line 4) redirect http://www.ssec.wisc.edu/%7Ebillh/visad.html - with Found to https://www.ssec.wisc.edu/~billh/visad.html (formats/ge-microct: line 28) redirect http://www.sci.utah.edu/cibc-software/cibc-datasets.html - permanently to https://www.sci.utah.edu/cibc-software/cibc-datasets.html ( formats/rhk: line 10) redirect http://www.rhk-tech.com - permanently to https://www.rhk-tech.com/ (users/farsight/index: line 4) redirect http://www.uh.edu/ - with Found to https://uh.edu/ ( formats/jpeg: line 29) redirect http://www.w3.org/Graphics/JPEG/jfif3.pdf - permanently to https://www.w3.org/Graphics/JPEG/jfif3.pdf (formats/visitech-xys: line 9) redirect http://www.visitech.co.uk/ - permanently to https://visitech.co.uk/ (formats/amira-mesh: line 9) redirect http://www.vsg3d.com/ - permanently to https://www.thermofisher.com/uk/en/home/electron-microscopy/products/software-em-3d-vis/3d-visualization-analysis-software.html (developers/java-library: line 140) redirect http://xerces.apache.org/xerces2-j - permanently to https://xerces.apache.org/xerces2-j/ (developers/java-library: line 143) redirect http://xerces.apache.org/xml-commons/components/external/ - permanently to https://xerces.apache.org/xml-commons/components/external/ (developers/java-library: line 134) redirect http://xml.apache.org/xalan-j - permanently to https://xml.apache.org/xalan-j/ (developers/python-dev: line 10) ok https://allencellmodeling.github.io/aicsimageio/ ( formats/index: line 15) redirect http://zenodo.org - with Found to https://zenodo.org/ (developers/java-library: line 80) ok https://asm.ow2.io ( formats/unisoku: line 10) redirect 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https://bitbucket.org/fernandoamat/keller-lab-block-filetype/overview - with Found to https://bitbucket.org/fernandoamat/keller-lab-block-filetype/src (developers/java-library: line 197) ok https://commons.apache.org/proper/commons-codec/ (developers/java-library: line 56) ok https://commons.apache.org/proper/commons-io/ (developers/java-library: line 59) ok https://commons.apache.org/proper/commons-lang/ (formats/jpeg-2000: line 27) ok https://code.google.com/archive/p/jj2000/ ( formats/dicom: line 37) ok https://barre.dev/medical/samples (users/mipav/index: line 4) ok https://cit.nih.gov/ (formats/quicktime-movie: line 32) ok https://developer.apple.com/documentation/quicktime-file-format (developers/java-library: line 182) ok https://checkerframework.org/ (developers/java-library: line 188) ok https://developers.google.com/j2objc/ (formats/ventana-bif: line 10) ok https://diagnostics.roche.com/global/en/home.html ( formats/sbig: line 8) ok https://diffractionlimited.com/ (users/octave/index: line 34) ok https://docs.octave.org/interpreter/Making-Java-Classes-Available.html ( index: line 26) redirect https://docs.openmicroscopy.org/contributing/ - permanently to https://ome-contributing.readthedocs.io/en/latest/ (formats/pattern-file: line 96) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html (developers/components: line 145) redirect https://docs.openmicroscopy.org/contributing/ci-bio-formats.html - permanently to https://ome-contributing.readthedocs.io/en/latest/ci-bio-formats.html (developers/index: line 80) redirect https://docs.openmicroscopy.org/contributing/index.html - permanently to https://ome-contributing.readthedocs.io/en/latest/index.html ( formats/jpeg: line 51) ok https://docs.oracle.com/javase/7/docs/technotes/guides/imageio/ (users/comlinetools/index: line 162) ok https://docs.oracle.com/javase/7/docs/technotes/samples/hprof.html (formats/amira-mesh: line 29) ok https://downloads.openmicroscopy.org/images/AmiraMesh/ ( about/whats-new: line 1358) ok https://downloads.openmicroscopy.org/images/BDV/ ( formats/sbig: line 26) redirect https://diffractionlimited.com/downloads/sbig/AppNoteArchive.zip - permanently to https://cdn.diffractionlimited.com/downloads/sbig/AppNoteArchive.zip ( about/whats-new: line 1360) ok https://downloads.openmicroscopy.org/images/CellH5/ ( about/whats-new: line 1359) ok https://downloads.openmicroscopy.org/images/CellWorX/ (formats/cellomics: line 29) ok https://downloads.openmicroscopy.org/images/Cellomics/ ( formats/dicom: line 44) ok https://downloads.openmicroscopy.org/images/DICOM/ ( formats/ecat7: line 29) ok https://downloads.openmicroscopy.org/images/ECAT7/ (formats/deltavision: line 36) ok https://downloads.openmicroscopy.org/images/DV/ ( about/whats-new: line 1361) ok https://downloads.openmicroscopy.org/images/Flex/ ( about/whats-new: line 1362) ok https://downloads.openmicroscopy.org/images/Gatan/ (formats/hamamatsu-vms: line 32) ok https://downloads.openmicroscopy.org/images/Hamamatsu-VMS/ (formats/hamamatsu-ndpi: line 36) ok https://downloads.openmicroscopy.org/images/Hamamatsu-NDPI/ (formats/bitplane-imaris: line 41) ok https://downloads.openmicroscopy.org/images/Imaris-IMS/ ( about/whats-new: line 1363) ok https://downloads.openmicroscopy.org/images/ICS/ (formats/incell-1000: line 30) ok https://downloads.openmicroscopy.org/images/InCell2000/ (formats/incell-3000: line 30) ok https://downloads.openmicroscopy.org/images/InCell3000/ ( about/whats-new: line 1364) ok https://downloads.openmicroscopy.org/images/KLB/ ( formats/leo: line 30) ok https://downloads.openmicroscopy.org/images/LEO/ (formats/leica-lif: line 36) ok https://downloads.openmicroscopy.org/images/Leica-LIF/ (formats/leica-scn: line 32) ok https://downloads.openmicroscopy.org/images/Leica-SCN/ ( formats/mrc: line 36) ok https://downloads.openmicroscopy.org/images/MRC/ ( about/whats-new: line 761) ok https://downloads.openmicroscopy.org/images/Leica-XLEF/ (formats/micro-manager: line 32) ok https://downloads.openmicroscopy.org/images/Micro-Manager/ (formats/nikon-nis-elements-nd2: line 32) ok https://downloads.openmicroscopy.org/images/ND2/ (users/imagej/load-images: line 157) redirect https://download.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html - with Found to https://docs.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html ( formats/nifti: line 30) ok https://downloads.openmicroscopy.org/images/NIfTI/ ( about/whats-new: line 1996) ok https://downloads.openmicroscopy.org/images/NRRD/ (formats/imspector-obf: line 30) ok https://downloads.openmicroscopy.org/images/OBF/ (formats/ome-tiff: line 31) ok https://downloads.openmicroscopy.org/images/OME-TIFF/ ( about/whats-new: line 495) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/BBBC017/ ( about/whats-new: line 1038) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/plate-companion/ ( formats/ome-xml: line 31) ok https://downloads.openmicroscopy.org/images/OME-XML/ ( about/whats-new: line 542) ok https://downloads.openmicroscopy.org/images/Olympus-FluoView/ (formats/olympus-oir: line 32) ok https://downloads.openmicroscopy.org/images/Olympus-OIR ( formats/png: line 34) ok https://downloads.openmicroscopy.org/images/PNG/ ( about/whats-new: line 1365) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Columbus/ (formats/perkinelmer-operetta: line 29) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Operetta/ (formats/becker-hickl-fifo: line 29) ok https://downloads.openmicroscopy.org/images/SPC-FIFO/ (formats/aperio-svs-tiff: line 32) ok https://downloads.openmicroscopy.org/images/SVS/ ( formats/tiff: line 35) ok https://downloads.openmicroscopy.org/images/TIFF/ (formats/vectra-qptiff: line 29) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/ ( formats/trestle: line 31) ok https://downloads.openmicroscopy.org/images/Trestle/ (formats/vectra-qptiff: line 28) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx ( about/whats-new: line 1367) ok https://downloads.openmicroscopy.org/images/Zeiss-CZI/ ( about/whats-new: line 1366) ok https://downloads.openmicroscopy.org/images/Ventana/ (developers/building-bioformats: line 37) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/ - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/ (developers/file-reader: line 148) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/ChannelFiller.html - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/ChannelFiller.html (developers/file-reader: line 144) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/ChannelMerger.html - permanently to 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https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FileStitcher.html (developers/reader-guide: line 6) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 50) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatException.html - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatException.html (developers/reader-guide: line 174) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#domains - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#core - permanently to 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(developers/reader-guide: line 166) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#hasCompanionFiles - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 162) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#suffixSufficient - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 84) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#makeFilterMetadata-- - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 159) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#suffixNecessary - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 78) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatReader.html#metadata - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 174) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 32) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#CANNOT_GROUP - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 30) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#CAN_GROUP - permanently to 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(users/comlinetools/domainlist: line 21) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#LM_DOMAIN - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 20) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#HISTOLOGY_DOMAIN - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 28) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#MUST_GROUP - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 24) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/FormatTools.html#SPM_DOMAIN - permanently to 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(developers/file-reader: line 52) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/IFormatReader.html#getImageCount-- - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/IFormatReader.html ( developers/wsi: line 41) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/IFormatReader.html#getOptimalTileHeight-- - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/IFormatReader.html (developers/matlab-dev: line 255) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/IFormatReader.html#getIndex-int-int-int- - permanently to https://downloads.openmicroscopy.org/bio-formats/7.3.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 92) redirect https://downloads.openmicroscopy.org/latest/bio-formats/api/loci/formats/IFormatReader.html#getMetadataValue-java.lang.String- - permanently to 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(developers/file-reader: line 83) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html#value-ome.units.unit.Unit- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/matlab-dev: line 203) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataRetrieve.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataRetrieve.html (developers/matlab-dev: line 311) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataStore.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataStore.html (developers/java-library: line 164) ok https://javaee.github.io/jaxb-v2/ ( about/index: line 58) ok https://lists.openmicroscopy.org.uk/pipermail/ome-devel ( formats/jpx: line 9) ok https://jpeg.org/jpeg2000/ ( about/index: line 61) ok https://lists.openmicroscopy.org.uk/pipermail/ome-users (developers/java-library: line 107) ok https://junit.org/junit4/ ( formats/dicom: line 35) ok https://learn.canceridc.dev/data/downloading-data (developers/java-library: line 227) ok https://logback.qos.ch (developers/components: line 96) ok https://libjpeg-turbo.org ( about/index: line 66) ok https://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/java-opts-file.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/java-opts-file.html (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html (users/visbio/index: line 4) ok https://loci.wisc.edu/visbio/ (developers/matlab-dev: line 29) redirect https://mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html - permanently to https://www.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html ( about/index: line 142) redirect https://loci.wisc.edu/bio-formats/ - temporarily to https://loci.wisc.edu/bio-formats/?repeat=w3tc (developers/matlab-dev: line 36) redirect https://mathworks.com/help/matlab/ref/prefdir.html - permanently to https://www.mathworks.com/help/matlab/ref/prefdir.html (users/matlab/index: line 15) redirect https://mathworks.com/matlabcentral/answers/index - permanently to https://www.mathworks.com/matlabcentral/answers/index (users/micromanager/index: line 4) ok https://micro-manager.org (formats/micro-manager: line 26) ok https://micro-manager.org/ (users/micromanager/index: line 60) ok https://micro-manager.org/Micro-Manager_User's_Guide#files-on-disk (users/mipav/index: line 4) ok https://mipav.cit.nih.gov/ (users/octave/index: line 4) ok https://octave.org ( about/whats-new: line 3413) ok https://ome-model.readthedocs.io/en/stable/ ( formats/avi: line 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https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMFileConvertorsAndViewers ( formats/mrc: line 12) ok https://www.ccpem.ac.uk/mrc_format/mrc_format.php ( formats/mrc: line 61) ok https://www.ccpem.ac.uk/mrc_format/mrc2014.php#note8 (formats/hamamatsu-aquacosmos-naf: line 9) redirect https://www.hamamatsu.com/ - with Found to https://www.hamamatsu.com/jp/en.html ( formats/dicom: line 73) ok https://www.dicomstandard.org/ (formats/kodak-bip: line 9) ok https://www.carestream.com/en/us ( formats/imacon: line 10) ok https://www.hasselblad.com/ ( formats/dicom: line 9) ok https://www.dicomstandard.org/dsc/ ( about/index: line 84) ok https://www.ietf.org/rfc/rfc2119.txt (formats/hitachi-s-4800: line 9) ok https://www.hitachi-hightech.com/file/us/pdf/library/technical/Hitachi_4800_STEM.pdf ( formats/dicom: line 42) ok https://www.dicomstandard.org/current/ ( about/whats-new: line 3183) ok https://www.intelligent-imaging.com (formats/3i-slidebook: line 52) ok 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https://www.merckmillipore.com: service unavailable (developers/java-library: line 206) ok https://www.mchange.com/projects/mchange-commons-java/ (developers/java-library: line 203) ok https://www.mchange.com/projects/c3p0/ (formats/metamorph-75-tiff: line 10) ok https://www.moleculardevices.com/ (formats/metamorph-stack-stk: line 60) redirect https://www.moleculardevices.com/systems/metamorph-research-imaging/metamorph-microscopy-automation-and-image-analysis-software - permanently to https://www.moleculardevices.com/products/cellular-imaging-systems/high-content-analysis/metamorph-microscopy (formats/mikroscan-tiff: line 10) ok https://www.mikroscan.com/ (formats/animated-png: line 27) ok https://www.mozilla.org/en-US/firefox ( about/whats-new: line 265) ok https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489422/ ( about/index: line 36) redirect https://www.ncbi.nlm.nih.gov/pubmed/20513764 - permanently to https://pubmed.ncbi.nlm.nih.gov/20513764/ ( formats/nifti: line 9) ok 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(metadata-summary: line 974) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Description (formats/cellsens-vsi: line 9) ok https://www.olympus-global.com (formats/olympus-sis-tiff: line 9) ok https://www.olympus-sis.com/ (metadata-summary: line 969) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#AnnotationRef_ID (formats/zeiss-czi: line 60) ok https://www.microsoft.com/en-us/download/details.aspx?id=48145 (metadata-summary: line 2094) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData (metadata-summary: line 984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Namespace (metadata-summary: line 979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_ID (metadata-summary: line 964) ok 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https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Name (metadata-summary: line 1104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#CommentAnnotation_Value (metadata-summary: line 1114) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Description (metadata-summary: line 1069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PinholeSize (metadata-summary: line 1074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_PockelCellSetting (metadata-summary: line 1079) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_SamplesPerPixel (metadata-summary: line 2839) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DatasetRef_ID (metadata-summary: line 1139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Name (metadata-summary: line 1129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_ID (metadata-summary: line 1204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Binning (metadata-summary: line 1209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Gain (metadata-summary: line 1214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ID (metadata-summary: line 1219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Offset (metadata-summary: line 1224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ReadOutRate (metadata-summary: line 1144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_AmplificationGain (metadata-summary: line 1229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Voltage (metadata-summary: line 1154) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Gain (metadata-summary: line 1159) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_ID (metadata-summary: line 1179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Offset (metadata-summary: line 1189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Type (metadata-summary: line 1194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Voltage (metadata-summary: line 1199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Zoom (metadata-summary: line 1284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DoubleAnnotation_Value (metadata-summary: line 1574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DichroicRef_ID (metadata-summary: line 1239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dichroic_ID (metadata-summary: line 1324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusX (metadata-summary: line 1389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Description (metadata-summary: line 1329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusY (metadata-summary: line 1664) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimentRef_ID (metadata-summary: line 1374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_X (metadata-summary: line 1379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_Y (metadata-summary: line 1454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Description (metadata-summary: line 1399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_ID (metadata-summary: line 1404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Type (metadata-summary: line 1119) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroupRef_ID (metadata-summary: line 1474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Name (metadata-summary: line 1464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_ID (metadata-summary: line 1124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterRef_ID (metadata-summary: line 1414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Email (metadata-summary: line 1419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_FirstName (metadata-summary: line 1424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_ID (metadata-summary: line 1429) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Institution (metadata-summary: line 1434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_LastName (metadata-summary: line 1439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_MiddleName (metadata-summary: line 1444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_UserName (metadata-summary: line 1579) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterRef_ID (metadata-summary: line 1509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filament_Type (metadata-summary: line 1024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSetRef_ID (metadata-summary: line 1589) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSet_ID (metadata-summary: line 1539) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_FilterWheel (metadata-summary: line 1619) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Description (metadata-summary: line 1624) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FolderRef_ID (metadata-summary: line 1544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_ID (metadata-summary: line 1569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_Type (metadata-summary: line 1649) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_AcquisitionDate (metadata-summary: line 1639) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Name (metadata-summary: line 1629) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_ID (metadata-summary: line 1659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Description (metadata-summary: line 1134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImageRef_ID (metadata-summary: line 1704) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_AirPressure (metadata-summary: line 1679) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_ID (metadata-summary: line 1709) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_CO2Percent (metadata-summary: line 1694) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Name (metadata-summary: line 1714) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Humidity (metadata-summary: line 1719) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Temperature (metadata-summary: line 1684) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#InstrumentRef_ID (metadata-summary: line 1729) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Instrument_ID (metadata-summary: line 1809) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_X (metadata-summary: line 1814) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_Y (metadata-summary: line 1819) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_FrequencyMultiplication (metadata-summary: line 1829) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_LaserMedium (metadata-summary: line 1849) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_PockelCell (metadata-summary: line 1859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Pulse (metadata-summary: line 1869) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_RepetitionRate (metadata-summary: line 1879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Tuneable (metadata-summary: line 1884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Type (metadata-summary: line 1889) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Wavelength (metadata-summary: line 1044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Attenuation (metadata-summary: line 1469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Leader_ID (metadata-summary: line 1049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_ID (metadata-summary: line 1054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Wavelength (metadata-summary: line 934) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_ID (metadata-summary: line 954) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_Power (metadata-summary: line 1979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerEnd (metadata-summary: line 1984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerStart (metadata-summary: line 2089) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LongAnnotation_Value (metadata-summary: line 2029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X1 (metadata-summary: line 2034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X2 (metadata-summary: line 2039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y1 (metadata-summary: line 2044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y2 (metadata-summary: line 939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_LotNumber (metadata-summary: line 944) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Manufacturer (metadata-summary: line 949) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Model (metadata-summary: line 959) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_SerialNumber (metadata-summary: line 2134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Height (metadata-summary: line 2189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Width (metadata-summary: line 2194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_X (metadata-summary: line 1689) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulationRef_ID (metadata-summary: line 2199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Y (metadata-summary: line 2209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_ID (metadata-summary: line 2219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_Type (metadata-summary: line 2259) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Microscope_Type (metadata-summary: line 2329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_CorrectionCollar (metadata-summary: line 2334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_ID (metadata-summary: line 2339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_Medium (metadata-summary: line 2344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex (metadata-summary: line 2269) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_CalibratedMagnification (metadata-summary: line 2274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Correction (metadata-summary: line 2279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_ID (metadata-summary: line 2284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Immersion (metadata-summary: line 2289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Iris (metadata-summary: line 2294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_LensNA (metadata-summary: line 2314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_NominalMagnification (metadata-summary: line 2324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_WorkingDistance (metadata-summary: line 2354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_BigEndian (metadata-summary: line 2364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_ID (metadata-summary: line 2359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_DimensionOrder (metadata-summary: line 2369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Interleaved (metadata-summary: line 2374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeX (metadata-summary: line 2379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeY (metadata-summary: line 2384) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeZ (metadata-summary: line 2389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SignificantBits (metadata-summary: line 2394) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeC (metadata-summary: line 2399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeT (metadata-summary: line 2404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeX (metadata-summary: line 2409) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeY (metadata-summary: line 2414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeZ (metadata-summary: line 2419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_TimeIncrement (metadata-summary: line 2444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_HashSHA1 (metadata-summary: line 2424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Type (metadata-summary: line 2434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_DeltaT (metadata-summary: line 2439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_ExposureTime (metadata-summary: line 2459) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionZ (metadata-summary: line 2454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionY (metadata-summary: line 2449) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionX (metadata-summary: line 2544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Description (metadata-summary: line 2464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheC (metadata-summary: line 2549) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_EndTime (metadata-summary: line 2469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheT (metadata-summary: line 2554) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_ID (metadata-summary: line 2474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheZ (metadata-summary: line 2559) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_MaximumFieldCount (metadata-summary: line 2494) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Description (metadata-summary: line 2564) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Name (metadata-summary: line 2569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_StartTime (metadata-summary: line 2484) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ColumnNamingConvention (metadata-summary: line 2489) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Columns (metadata-summary: line 2499) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ExternalIdentifier (metadata-summary: line 2504) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ID (metadata-summary: line 2509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Name (metadata-summary: line 2514) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_RowNamingConvention (metadata-summary: line 2519) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Rows (metadata-summary: line 2524) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Status (metadata-summary: line 2529) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginX (metadata-summary: line 2534) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginY (metadata-summary: line 2654) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_X (metadata-summary: line 2659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_Y (metadata-summary: line 2844) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Description (metadata-summary: line 2699) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polygon_Points (metadata-summary: line 2779) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerEnd (metadata-summary: line 2784) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerStart (metadata-summary: line 2859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_ID (metadata-summary: line 2864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Name (metadata-summary: line 2789) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_Points (metadata-summary: line 2874) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Description (metadata-summary: line 1644) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROIRef_ID (metadata-summary: line 2894) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Description (metadata-summary: line 1864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pump_ID (metadata-summary: line 2879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_ID (metadata-summary: line 3244) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ReagentRef_ID (metadata-summary: line 2884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Name (metadata-summary: line 2899) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ID (metadata-summary: line 2904) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Name (metadata-summary: line 2909) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ReagentIdentifier (metadata-summary: line 3014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Description (metadata-summary: line 2994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Width (metadata-summary: line 2939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Height (metadata-summary: line 2999) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_X (metadata-summary: line 3004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Y (metadata-summary: line 3024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Name (metadata-summary: line 3019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ID (metadata-summary: line 3034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolDescription (metadata-summary: line 3044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetDescription (metadata-summary: line 3039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolIdentifier (metadata-summary: line 3049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetIdentifier (metadata-summary: line 3029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Screen_PlateRef_ID (metadata-summary: line 3054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Type (metadata-summary: line 1289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillColor (metadata-summary: line 1294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillRule (metadata-summary: line 1299) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontFamily (metadata-summary: line 1304) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontSize (metadata-summary: line 1309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontStyle (metadata-summary: line 1319) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Locked (metadata-summary: line 1314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_ID (metadata-summary: line 1334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeColor (metadata-summary: line 1339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeDashArray (metadata-summary: line 1344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeWidth (metadata-summary: line 1369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Transform (metadata-summary: line 1349) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Text (metadata-summary: line 1359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheT (metadata-summary: line 1354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheC (metadata-summary: line 1364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheZ (metadata-summary: line 3059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Name (metadata-summary: line 3064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_X (metadata-summary: line 3099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TagAnnotation_Value (metadata-summary: line 3124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TermAnnotation_Value (metadata-summary: line 3069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Y (metadata-summary: line 3074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Z (metadata-summary: line 3134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstT (metadata-summary: line 3129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstC (metadata-summary: line 3139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstZ (metadata-summary: line 3144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_IFD (metadata-summary: line 3149) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_PlaneCount (metadata-summary: line 3174) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TimestampAnnotation_Value (metadata-summary: line 3204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_TiffData_UUID_FileName (metadata-summary: line 3184) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutInTolerance (metadata-summary: line 3179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutIn (metadata-summary: line 3194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOutTolerance (metadata-summary: line 3189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOut (metadata-summary: line 3209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#UniversallyUniqueIdentifier (metadata-summary: line 2574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSampleRef_ID (metadata-summary: line 3264) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_ID (metadata-summary: line 3274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Index (metadata-summary: line 3199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_Transmittance (metadata-summary: line 3279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionX (metadata-summary: line 3284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionY (metadata-summary: line 3219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Color (metadata-summary: line 3289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Timepoint (metadata-summary: line 3224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Column (metadata-summary: line 3229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalDescription (metadata-summary: line 3234) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalIdentifier ( about/index: line 38) ok https://www.openmicroscopy.org/citing-ome (formats/ome-tiff: line 57) ok https://www.openmicroscopy.org/commercial-partners/#partnerships ( about/index: line 24) ok https://www.openmicroscopy.org/licensing ( about/index: line 72) ok https://www.openmicroscopy.org/omero/ (metadata-summary: line 3309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#XMLAnnotation_Value ( about/whats-new: line 789) ok https://www.openmicroscopy.org/security/advisories/2021-SV4/ (metadata-summary: line 3239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ID (metadata-summary: line 3249) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Row ( about/index: line 56) ok https://www.openmicroscopy.org/support/ (metadata-summary: line 3254) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Type (formats/princeton-instruments-spe: line 9) ok https://www.princetoninstruments.com (formats/mias-maia-scientific: line 9) ok https://www.selectscience.net/supplier/maia-scientific/?compID=6088 (developers/logging: line 7) ok https://www.slf4j.org/manual.html#libraries (formats/gatan-digital-micrograph: line 56) ok https://www.sas.upenn.edu/~heiney/html-physics/datasqueeze/ (formats/tecan-spark-cyto-workspace: line 10) ok https://www.tecan.com/ ( formats/ecat7: line 9) redirect https://www.siemens.com/global/en/home.html - permanently to https://www.siemens.com/global/en.html ( formats/seiko: line 10) redirect https://www.seiko.co.jp/en - permanently to https://www.seiko.co.jp:443/en/ ( formats/i2i: line 9) ok https://www.umassmed.edu/ ( formats/gif: line 11) ok https://www.unisys.com/ (formats/cellvoyager: line 10) ok https://www.yokogawa.com/ (formats/zeiss-axiovision-tiff: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html (formats/zeiss-axiovision-zvi: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html (formats/zeiss-czi: line 7) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html (formats/pcx-pc-paintbrush: line 49) ok https://www.zeiss.com/microscopy/en/service-support/downloads.html (formats/zeiss-axiovision-zvi: line 67) ok https://www.zeiss.com/microscopy/en/service-support/support/discontinued-products.html (formats/zeiss-axiovision-zvi: line 9) redirect https://www.zeiss.com/microscopy - permanently to https://www.zeiss.com/microscopy/en/home.html (formats/bio-rad-pic: line 11) redirect https://www.zeiss.com - permanently to https://www.zeiss.com/corporate/en/home.html (developers/java-library: line 191) redirect https://www.unidata.ucar.edu/software/netcdf-java/v4.6/reference/httpservices.html - with Found to https://docs.unidata.ucar.edu/netcdf-java/4.6/userguide/index.html (about/bug-reporting: line 64) ok https://zenodo.org/ ( formats/mrc: line 11) ok https://www2.mrc-lmb.cam.ac.uk/ ( formats/pcoraw: line 9) redirect https://www.pco.de/ - permanently to https://www.excelitas.com/product-category/pco?referer=pco build succeeded. Look for any errors in the above output or in target/sphinx/linkcheck/output.txt [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 06:38 min [INFO] Finished at: 2024-05-25T01:26:52+01:00 [INFO] ------------------------------------------------------------------------ Finished: SUCCESS