Started by upstream project "Trigger" build number 291 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-linkcheck [BIOFORMATS-linkcheck] $ /bin/bash -xe /tmp/jenkins6756256726682601719.sh + TAG=snoopycrimecop/bioformats:merge_ci + sudo docker run --rm -w /bio-formats-build/bio-formats-documentation --entrypoint mvn snoopycrimecop/bioformats:merge_ci test -DskipSphinxTests=false -Dome-model.uri=/bio-formats-build/ome-model/docs/sphinx/target/sphinx/html [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.codehaus.mojo:exec-maven-plugin @ line 369, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [WARNING] The project ome:bio-formats-documentation:jar:8.1.0-SNAPSHOT uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html [INFO] [INFO] -------------------< ome:bio-formats-documentation >-------------------- [INFO] Building Bio-Formats documentation 8.1.0-SNAPSHOT [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-configuration) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 116 resources [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:parse-version (parse-version) @ bio-formats-documentation --- [INFO] [INFO] --- maven-dependency-plugin:3.1.1:unpack (unpack-ome-xml) @ bio-formats-documentation --- [INFO] Configured Artifact: org.openmicroscopy:ome-xml:6.3.7-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-api:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-bsd:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:formats-gpl:sources:8.1.0-SNAPSHOT:jar [INFO] Configured Artifact: ome:bio-formats-examples:sources:8.1.0-SNAPSHOT:jar [INFO] Unpacking /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-gpl with includes "" and excludes "" [INFO] Unpacking /home/build/.m2/repository/ome/bio-formats-examples/8.1.0-SNAPSHOT/bio-formats-examples-8.1.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes "" [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 10 resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-documentation --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (gen-meta-support) @ bio-formats-documentation --- Parsing AFIReader Parsing AIMReader Parsing AliconaReader Parsing AmiraReader Parsing AnalyzeReader Parsing APLReader Parsing ARFReader Parsing BaseZeissReader Parsing BDReader Parsing BioRadGelReader Parsing BioRadReader Parsing BioRadSCNReader Parsing BrukerReader Parsing BurleighReader Parsing CanonRawReader Parsing CellomicsReader Parsing CellSensReader Parsing CellVoyagerReader Parsing CellWorxReader Parsing ColumbusReader Parsing CV7000Reader Parsing DeltavisionReader Parsing DNGReader Parsing Ecat7Reader Parsing FEIReader Parsing FEITiffReader Parsing FlexReader Parsing FluoviewReader Parsing FujiReader Parsing FV1000Reader Parsing GatanDM2Reader Parsing GatanReader Parsing GelReader Parsing HamamatsuVMSReader Parsing HISReader Parsing HitachiReader Parsing HRDGDFReader Parsing I2IReader Parsing ImaconReader Parsing ImagicReader Parsing ImarisHDFReader Parsing ImarisReader Parsing ImarisTiffReader Parsing IMODReader Parsing ImprovisionTiffReader Parsing ImspectorReader Parsing InCell3000Reader Parsing InCellReader Parsing INRReader Parsing InveonReader Parsing IonpathMIBITiffReader Parsing IPLabReader Parsing IPWReader Parsing IvisionReader Parsing JEOLReader Parsing JPKReader Parsing JPXReader Parsing KhorosReader Parsing KodakReader Parsing L2DReader Parsing LeicaReader Parsing LeicaSCNReader Parsing LEOReader Parsing LiFlimReader Parsing LIFReader Parsing LIMReader Parsing LOFReader Parsing MetamorphReader Parsing MetamorphTiffReader Parsing MetaxpressTiffReader Parsing MIASReader Parsing MicroCTReader Parsing MikroscanTiffReader Parsing MINCReader Parsing MolecularImagingReader Parsing MRCReader Parsing MRWReader Parsing NAFReader Parsing ND2Reader Parsing NDPIReader Parsing NDPISReader Parsing NiftiReader Parsing NikonElementsTiffReader Parsing NikonReader Parsing NikonTiffReader Parsing OIRReader Parsing OlympusTileReader Parsing OpenlabRawReader Parsing OpenlabReader Parsing OperettaReader Parsing OxfordInstrumentsReader Parsing PCIReader Parsing PCORAWReader Parsing PDSReader Parsing PerkinElmerReader Parsing PhotoshopTiffReader Parsing PovrayReader Parsing PQBinReader Parsing PrairieReader Parsing PSDReader Parsing PyramidTiffReader Parsing QuesantReader Parsing RCPNLReader Parsing RHKReader Parsing SBIGReader Parsing ScanrReader Parsing SDTReader Parsing SeikoReader Parsing SEQReader Parsing SIFReader Parsing SimplePCITiffReader Parsing SISReader Parsing SlidebookReader Parsing SlidebookTiffReader Parsing SMCameraReader Parsing SPCReader Parsing SPEReader Parsing SpiderReader Parsing SVSReader Parsing TargaReader Parsing TCSReader Parsing TecanReader Parsing TillVisionReader Parsing TopometrixReader Parsing TrestleReader Parsing UBMReader Parsing UnisokuReader Parsing VarianFDFReader Parsing VectraReader Parsing VeecoReader Parsing VentanaReader Parsing VGSAMReader Parsing VisitechReader Parsing VolocityClippingReader Parsing VolocityReader Parsing WATOPReader Parsing XLEFReader Parsing ZeissCZIReader Parsing ZeissLMSReader Parsing ZeissLSMReader Parsing ZeissTIFFReader Parsing ZeissZVIReader Parsing APNGReader Parsing AVIReader Parsing BaseTiffReader Parsing BDVReader Parsing BIFormatReader Parsing BMPReader Parsing CellH5Reader Parsing DicomReader Parsing EPSReader Parsing FakeReader Parsing FilePatternReader Parsing FitsReader Parsing FlowSightReader Parsing GIFReader Parsing ICSReader Parsing IM3Reader Parsing ImageIOReader Parsing JPEG2000Reader Parsing JPEGReader Parsing KLBReader Parsing MicromanagerReader Parsing MinimalTiffReader Parsing MNGReader Parsing NRRDReader Parsing OBFReader Parsing OMETiffReader Parsing OMEXMLReader Parsing PCXReader Parsing PGMReader Parsing PictReader Parsing QTReader Parsing SlideBook7Reader Parsing TextReader Parsing TiffDelegateReader Parsing TiffJAIReader Parsing TiffReader Parsing TileJPEGReader Parsing ZipReader [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-structure-table) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-ratings) @ bio-formats-documentation --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:java (gen-format-pages) @ bio-formats-documentation --- Writing /bio-formats-build/bio-formats-documentation/target/sphinx/formats/3i-slidebook.rst: done. 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[INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats-documentation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /bio-formats-build/bio-formats-documentation/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats-documentation --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats-documentation --- [INFO] No tests to run. [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) @ bio-formats-documentation --- Running Sphinx v7.4.7 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading pickled environment... done /bio-formats-build/venv/lib/python3.9/site-packages/sphinx/builders/linkcheck.py:86: RemovedInSphinx80Warning: The default value for 'linkcheck_report_timeouts_as_broken' will change to False in Sphinx 8, meaning that request timeouts will be reported with a new 'timeout' status, instead of as 'broken'. This is intended to provide more detail as to the failure mode. See https://github.com/sphinx-doc/sphinx/issues/11868 for details. warnings.warn(deprecation_msg, RemovedInSphinx80Warning, stacklevel=1) building [mo]: targets for 0 po files that are out of date writing output... building [linkcheck]: targets for 425 source files that are out of date updating environment: 0 added, 344 changed, 0 removed reading sources... [ 0%] formats/3i-slidebook reading sources... [ 1%] formats/3i-slidebook-7 reading sources... [ 1%] formats/abd-tiff reading sources... [ 1%] formats/aim reading sources... [ 1%] formats/alicona-3d reading sources... [ 2%] formats/amersham-biosciences-gel reading sources... [ 2%] formats/amira-mesh reading sources... [ 2%] formats/amnis-flowsight reading sources... [ 3%] formats/analyze-75 reading sources... [ 3%] formats/andor-sif reading sources... [ 3%] formats/animated-png reading sources... [ 3%] formats/aperio-afi reading sources... [ 4%] formats/aperio-svs-tiff reading sources... 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[ 63%] metadata/IvisionReader writing output... [ 64%] metadata/JEOLReader writing output... [ 64%] metadata/JPEG2000Reader writing output... [ 64%] metadata/JPEGReader writing output... [ 64%] metadata/JPKReader writing output... [ 64%] metadata/JPXReader writing output... [ 65%] metadata/KLBReader writing output... [ 65%] metadata/KhorosReader writing output... [ 65%] metadata/KodakReader writing output... [ 65%] metadata/L2DReader writing output... [ 66%] metadata/LEOReader writing output... [ 66%] metadata/LIFReader writing output... [ 66%] metadata/LIMReader writing output... [ 66%] metadata/LOFReader writing output... [ 67%] metadata/LeicaReader writing output... [ 67%] metadata/LeicaSCNReader writing output... [ 67%] metadata/LiFlimReader writing output... [ 67%] metadata/MIASReader writing output... [ 68%] metadata/MINCReader writing output... [ 68%] metadata/MNGReader writing output... [ 68%] metadata/MRCReader writing output... [ 68%] metadata/MRWReader writing output... 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(formats/bitplane-imaris: line 10) -ignored- https://imaris.oxinst.com/ (formats/bitplane-imaris: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java (formats/bitplane-imaris: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImarisTiffReader.java (formats/bitplane-imaris: line 36) -ignored- https://imaris.oxinst.com/support/imaris-file-format (formats/bruker-mri: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BrukerReader.java (formats/burleigh: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/BurleighReader.java (formats/canon-dng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DNGReader.java ( formats/cellh5: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/CellH5Reader.java ( formats/cellh5: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/CellH5Writer.java (formats/cellomics: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellomicsReader.java (formats/cellsens-vsi: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellSensReader.java (formats/cellvoyager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CellVoyagerReader.java ( formats/cv7000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/CV7000Reader.java (formats/deltavision: line 10) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/microscopy (formats/deltavision: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java (formats/deltavision: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/RCPNLReader.java ( formats/dicom: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/DicomReader.java ( formats/dicom: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/DicomWriter.java ( formats/ecat7: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/Ecat7Reader.java ( formats/eps: line 9) -ignored- https://www.adobe.com/ ( formats/eps: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/EPSReader.java ( formats/eps: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/EPSWriter.java (formats/evotecperkinelmer-opera-flex: line 9) -ignored- https://www.perkinelmer.com/ (formats/evotecperkinelmer-opera-flex: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FlexReader.java ( formats/fei: line 9) -ignored- https://www.fei.com/home/ ( formats/fei: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEIReader.java (formats/fei-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FEITiffReader.java ( formats/fits: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/FitsReader.java (formats/gatan-digital-micrograph: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanReader.java (formats/gatan-digital-micrograph: line 56) -ignored- https://www.sas.upenn.edu/~heiney/html-physics/datasqueeze/ (formats/gatan-digital-micrograph-2: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/GatanDM2Reader.java (formats/ge-microct: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MicroCTReader.java ( formats/gif: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/GIFReader.java (formats/hamamatsu-aquacosmos-naf: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NAFReader.java (formats/hamamatsu-his: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/HISReader.java 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https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/ICSWriter.java ( formats/ics: line 28) -ignored- https://valelab4.ucsf.edu/~nstuurman/IJplugins/Ics_Opener.html ( formats/imacon: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImaconReader.java (formats/imagepro-sequence: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SEQReader.java (formats/imagepro-workspace: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPWReader.java ( formats/imagic: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImagicReader.java ( formats/imod: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IMODReader.java (formats/improvision-openlab-liff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabReader.java (formats/improvision-openlab-raw: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OpenlabRawReader.java (formats/improvision-tiff: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImprovisionTiffReader.java (formats/imspector-obf: line 9) -ignored- https://imspector.mpibpc.mpg.de (formats/imspector-obf: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OBFReader.java (formats/incell-1000: line 11) -ignored- https://www.cytivalifesciences.com/en/us/solutions/cellular-analysis/products-and-technology/high-content-analysis (formats/incell-3000: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InCell3000Reader.java ( formats/inr: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/INRReader.java ( formats/inveon: line 20) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/InveonReader.java (formats/ionpath-mibi: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IonpathMIBITiffReader.java ( formats/iplab: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IPLabReader.java (formats/iplab-mac: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/IvisionReader.java ( formats/jeol: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JEOLReader.java ( formats/jpeg: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEGReader.java ( formats/jpeg: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEGWriter.java (formats/jpeg-2000: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/JPEG2000Reader.java (formats/jpeg-2000: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/JPEG2000Writer.java ( formats/jpk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPKReader.java ( formats/jpx: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/JPXReader.java (formats/keller-lab-block: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/KLBReader.java (formats/khoros-viff-bitmap: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KhorosReader.java (formats/kodak-bip: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/KodakReader.java (formats/lambert-instruments-flim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LiFlimReader.java (formats/lavision-imspector: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ImspectorReader.java (formats/leica-lcs-lei: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaReader.java (formats/leica-lif: line 68) -ignored- https://www.fei.com/software/amira-avizo/ (formats/leica-lof: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LOFReader.java (formats/leica-scn: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java (formats/leica-xlef: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/XLEFReader.java ( formats/leo: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LEOReader.java (formats/li-cor-l2d: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/L2DReader.java ( formats/lim: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/LIMReader.java ( formats/lim: line 55) -ignored- https://www.nis-elements.com/ (formats/metamorph-75-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphTiffReader.java (formats/metamorph-stack-stk: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MetamorphReader.java (formats/mias-maia-scientific: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MIASReader.java (formats/micro-manager: line 9) -ignored- https://valelab.ucsf.edu/ (formats/micro-manager: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MicromanagerReader.java (formats/mikroscan-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MikroscanTiffReader.java (formats/minc-mri: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MINCReader.java (formats/minolta-mrw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRWReader.java ( formats/mng: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/MNGReader.java ( formats/mng: line 26) -ignored- https://sourceforge.net/projects/libmng/ ( formats/mng: line 30) -ignored- https://sourceforge.net/projects/libmng/files/libmng-testsuites/MNGsuite-1.0/MNGsuite.zip/ ( formats/mng: line 34) -ignored- https://sourceforge.net/projects/libmng/files/libmng-testsuites/Release-20030305/MNGsuite-20030305.zip/ (formats/molecular-imaging: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MolecularImagingReader.java ( formats/mrc: line 24) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/MRCReader.java ( formats/mrc: line 61) -ignored- https://bio3d.colorado.edu/imod/doc/mrc_format.txt ( formats/nef: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/NikonReader.java ( formats/nifti: line 21) 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https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/FV1000Reader.java (formats/olympus-oir: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OIRReader.java (formats/olympus-omp2info: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java (formats/olympus-scanr: line 22) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ScanrReader.java (formats/olympus-sis-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/SISReader.java (formats/ome-tiff: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMETiffReader.java (formats/ome-tiff: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMETiffWriter.java ( formats/ome-xml: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/OMEXMLReader.java ( formats/ome-xml: line 23) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/out/OMEXMLWriter.java (formats/omero-pyramid: line 19) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/TiffReader.java (formats/oxford-instruments: line 10) -ignored- https://www.oxinst.com/ (formats/oxford-instruments: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OxfordInstrumentsReader.java ( formats/pcoraw: line 9) -ignored- https://www.excelitas.com/product-category/pco-camera-software ( formats/pcoraw: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PCORAWReader.java (formats/pcx-pc-paintbrush: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/PCXReader.java (formats/perkin-elmer-densitometer: line 9) -ignored- https://www.perkinelmer.com (formats/perkin-elmer-densitometer: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/PDSReader.java (formats/perkinelmer-columbus: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/ColumbusReader.java (formats/perkinelmer-nuance: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-bsd/src/loci/formats/in/IM3Reader.java (formats/perkinelmer-operetta: line 21) -ignored- https://github.com/ome/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/OperettaReader.java 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http://www.vsg3d.com/ - permanently to https://www.thermofisher.com/uk/en/home/electron-microscopy/products/software-em-3d-vis/3d-visualization-analysis-software.html (formats/visitech-xys: line 9) redirect http://www.visitech.co.uk/ - permanently to https://visitech.co.uk/ (formats/picoquant-bin: line 26) redirect http://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software - permanently to https://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software (developers/java-library: line 143) redirect http://xerces.apache.org/xml-commons/components/external/ - permanently to https://xerces.apache.org/xml-commons/components/external/ (developers/java-library: line 140) redirect http://xerces.apache.org/xerces2-j - permanently to https://xerces.apache.org/xerces2-j/ (developers/java-library: line 134) redirect http://xml.apache.org/xalan-j - permanently to https://xml.apache.org/xalan-j/ ( about/whats-new: line 3506) redirect https://artifacts.openmicroscopy.org - with Found to https://artifacts.openmicroscopy.org/ui/ (developers/java-library: line 7) redirect https://artifacts.openmicroscopy.org/artifactory - with Found to https://artifacts.openmicroscopy.org:443/ui/ (developers/python-dev: line 10) ok https://allencellmodeling.github.io/aicsimageio/ (developers/java-library: line 80) ok https://asm.ow2.io ( formats/unisoku: line 10) redirect http://www.unisoku.com - permanently to https://www.unisoku.com/ ( about/whats-new: line 604) ok https://bio-formats.readthedocs.io/en/stable/ ( users/r/index: line 10) ok https://bioconductor.org ( formats/cv7000: line 10) redirect http://www.yokogawa.com/ - permanently to https://www.yokogawa.com/ (developers/r-dev: line 10) ok https://bioconductor.org/packages/devel/bioc/html/RBioFormats.html (developers/r-dev: line 28) ok 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line 157) redirect https://download.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html - with Found to https://docs.oracle.com/javase/1.5.0/docs/api/java/util/regex/Pattern.html (formats/amira-mesh: line 29) ok https://downloads.openmicroscopy.org/images/AmiraMesh/ ( about/whats-new: line 1471) ok https://downloads.openmicroscopy.org/images/BDV/ ( about/whats-new: line 81) ok https://datacommons.cancer.gov/repository/imaging-data-commons/ (formats/cellomics: line 29) ok https://downloads.openmicroscopy.org/images/Cellomics/ ( about/whats-new: line 1473) ok https://downloads.openmicroscopy.org/images/CellH5/ ( about/whats-new: line 1472) ok https://downloads.openmicroscopy.org/images/CellWorX/ ( formats/ecat7: line 29) ok https://downloads.openmicroscopy.org/images/ECAT7/ ( formats/dicom: line 43) ok https://downloads.openmicroscopy.org/images/DICOM/ ( about/whats-new: line 1475) ok https://downloads.openmicroscopy.org/images/Gatan/ (formats/deltavision: line 36) ok 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https://downloads.openmicroscopy.org/images/Leica-LIF/ (formats/micro-manager: line 32) ok https://downloads.openmicroscopy.org/images/Micro-Manager/ ( formats/nifti: line 30) ok https://downloads.openmicroscopy.org/images/NIfTI/ ( about/whats-new: line 874) ok https://downloads.openmicroscopy.org/images/Leica-XLEF/ (formats/nikon-nis-elements-nd2: line 32) ok https://downloads.openmicroscopy.org/images/ND2/ ( formats/mrc: line 36) ok https://downloads.openmicroscopy.org/images/MRC/ (formats/ome-tiff: line 31) ok https://downloads.openmicroscopy.org/images/OME-TIFF/ ( about/whats-new: line 608) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/BBBC017/ ( about/whats-new: line 1151) ok https://downloads.openmicroscopy.org/images/OME-TIFF/2016-06/plate-companion/ (formats/imspector-obf: line 30) ok https://downloads.openmicroscopy.org/images/OBF/ ( about/whats-new: line 2109) ok https://downloads.openmicroscopy.org/images/NRRD/ ( formats/ome-xml: line 31) ok https://downloads.openmicroscopy.org/images/OME-XML/ ( formats/png: line 34) ok https://downloads.openmicroscopy.org/images/PNG/ (formats/olympus-oir: line 32) ok https://downloads.openmicroscopy.org/images/Olympus-OIR ( about/whats-new: line 655) ok https://downloads.openmicroscopy.org/images/Olympus-FluoView/ ( about/whats-new: line 1478) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Columbus/ (formats/aperio-svs-tiff: line 32) ok https://downloads.openmicroscopy.org/images/SVS/ (formats/becker-hickl-fifo: line 29) ok https://downloads.openmicroscopy.org/images/SPC-FIFO/ ( formats/tiff: line 35) ok https://downloads.openmicroscopy.org/images/TIFF/ (formats/perkinelmer-operetta: line 29) ok https://downloads.openmicroscopy.org/images/PerkinElmer-Operetta/ ( formats/trestle: line 31) ok https://downloads.openmicroscopy.org/images/Trestle/ (formats/vectra-qptiff: line 29) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/ ( about/whats-new: line 1479) ok https://downloads.openmicroscopy.org/images/Ventana/ ( about/whats-new: line 1480) ok https://downloads.openmicroscopy.org/images/Zeiss-CZI/ (formats/vectra-qptiff: line 28) ok https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_Image%20Format.docx (developers/building-bioformats: line 37) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/ - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/ (developers/file-reader: line 140) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelSeparator.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/ChannelSeparator.html (developers/file-reader: line 148) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelFiller.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/ChannelFiller.html (developers/file-reader: line 144) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ChannelMerger.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/ChannelMerger.html (developers/reader-guide: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/CoreMetadata.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/CoreMetadata.html (developers/reader-guide: line 6) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/file-reader: line 155) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/DimensionSwapper.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/DimensionSwapper.html (developers/file-reader: line 136) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FileStitcher.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FileStitcher.html (developers/reader-guide: line 50) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatException.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatException.html (developers/reader-guide: line 170) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#datasetDescription - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 166) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#hasCompanionFiles - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#core - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 174) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#domains - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 78) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#metadata - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#initFile-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 115) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#isThisType-byte:A- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 84) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#makeFilterMetadata-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatReader.html (developers/reader-guide: line 174) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 159) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatReader.html#suffixNecessary - with Found to 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https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#CAN_GROUP - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 16) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#FLIM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 15) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#EM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 17) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GEL_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 19) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HCS_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 18) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#GRAPHICS_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 20) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#HISTOLOGY_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (developers/reader-guide: line 28) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#MUST_GROUP - with Found to 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with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (users/comlinetools/domainlist: line 24) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#SPM_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (users/comlinetools/domainlist: line 25) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/FormatTools.html#UNKNOWN_DOMAIN - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/FormatTools.html (developers/file-reader: line 21) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatHandler.html#setId-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatHandler.html (developers/reader-guide: line 23) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#fileGroupOption-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 67) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getDimensionOrder-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/reader-guide: line 110) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#close-boolean- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 52) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getImageCount-- - with Found to 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https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getOptimalTileWidth-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 79) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getPixelType-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 64) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getRGBChannelCount-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 49) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#getSeriesCount-- - with Found to 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(developers/file-reader: line 73) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isLittleEndian-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/file-reader: line 70) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isRGB-- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/reader-guide: line 12) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isSingleFile-java.lang.String- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/IFormatReader.html (developers/reader-guide: line 17) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/IFormatReader.html#isThisType-loci.common.RandomAccessInputStream- - with Found to 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line 94) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader-boolean- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/MetadataTools.html (developers/reader-guide: line 84) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/MetadataTools.html#populatePixels-loci.formats.meta.MetadataStore-loci.formats.IFormatReader- - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/MetadataTools.html (developers/file-reader: line 116) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/ReaderWrapper.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/ReaderWrapper.html (developers/file-reader: line 151) redirect 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line 204) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/services/package-summary.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/services/package-summary.html (developers/reader-guide: line 6) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/in/package-summary.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/in/package-summary.html ( formats/options: line 76) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/api/loci/formats/in/DynamicMetadataOptions.html - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/api/loci/formats/in/DynamicMetadataOptions.html (users/imagej/index: line 13) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bioformats_package.jar - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/bioformats_package.jar (users/comlinetools/index: line 9) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/bftools.zip - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/bftools.zip (users/octave/index: line 36) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/ - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/ (developers/java-library: line 32) redirect https://downloads.openmicroscopy.org/latest/bio-formats8/artifacts/formats-gpl.jar - with Found to https://downloads.openmicroscopy.org/bio-formats/8.0.0/artifacts/formats-gpl.jar ( about/whats-new: line 2992) ok https://downloads.openmicroscopy.org/ome-files-cpp/ (developers/index: line 59) redirect https://downloads.openmicroscopy.org/latest/ome-files-cpp/ - with Found to https://downloads.openmicroscopy.org/ome-files-cpp/0.5.0/ (users/ome-server/index: line 17) ok https://downloads.openmicroscopy.org/ome/2.6.1/ (users/ome-server/index: line 119) ok https://downloads.openmicroscopy.org/ome/code/omeis.c (users/ome-server/index: line 117) ok https://downloads.openmicroscopy.org/ome/code/BioFormats.pm ( formats/avi: line 68) ok https://en.wikipedia.org/wiki/Audio_Video_Interleave (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_injection (users/imglib/index: line 4) ok https://en.wikipedia.org/wiki/Color_depth (developers/service: line 7) ok https://en.wikipedia.org/wiki/Component-based_software_engineering (formats/minolta-mrw: line 26) ok https://en.wikipedia.org/wiki/Dcraw (developers/service: line 7) ok https://en.wikipedia.org/wiki/Dependency_inversion_principle ( formats/dicom: line 29) ok https://en.wikipedia.org/wiki/List_of_freeware_health_software ( formats/mrc: line 66) ok https://en.wikipedia.org/wiki/MRC_%28file_format%29 ( developers/wsi: line 14) ok https://en.wikipedia.org/wiki/Pyramid_(image_processing) (developers/code-formatting: line 22) ok 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(developers/java-library: line 77) ok https://github.com/EsotericSoftware/reflectasm ( about/whats-new: line 901) redirect https://github.blog/2021-09-01-improving-git-protocol-security-github/ - permanently to https://github.blog/security/application-security/improving-git-protocol-security-github/ (developers/java-library: line 212) ok https://github.com/FasterXML/jackson-annotations (developers/java-library: line 209) ok https://github.com/FasterXML/jackson-core (developers/java-library: line 104) ok https://github.com/JodaOrg/joda-time (developers/java-library: line 215) ok https://github.com/FasterXML/jackson-databind (developers/java-library: line 157) ok https://github.com/aslom/xpp3/blob/master/LICENSE.txt (developers/java-library: line 155) ok https://github.com/aslom/xpp3 (developers/java-library: line 68) ok https://github.com/drewnoakes/metadata-extractor (developers/java-library: line 71) ok https://github.com/airlift/aircompressor ( about/index: line 65) ok https://github.com/fiji/fiji/issues (developers/java-library: line 179) ok https://github.com/findbugsproject/findbugs (developers/components: line 271) ok https://github.com/glencoesoftware/jxrlib (developers/service: line 22) ok https://github.com/google/guice (developers/java-library: line 86) ok https://github.com/google/guava (formats/bitplane-imaris: line 30) ok https://github.com/imaris/ImarisWriter (developers/java-library: line 113) ok https://github.com/hamcrest/JavaHamcrest (formats/bio-rad-gel: line 65) ok https://github.com/itsayellow/biorad1sc_reader (users/endrov/index: line 4) ok https://github.com/mahogny/Endrov (developers/components: line 77) ok https://github.com/jai-imageio/jai-imageio-core ( users/iqm/index: line 4) ok https://github.com/iqmmug/iqm (developers/java-library: line 119) ok https://github.com/perf4j/perf4j (developers/components: line 212) ok https://github.com/mdbtools/mdbtools (users/matlab/index: line 67) ok https://github.com/pramukta/bf-tools 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https://imagej.net/formats/lsm ( formats/tiff: line 72) redirect https://imagej.net/TIFF - permanently to https://imagej.net/formats/tiff (formats/big-data-viewer: line 10) redirect https://imagej.net/BigDataViewer - permanently to https://imagej.net/plugins/bdv/ ( formats/tiff: line 72) ok https://imagej.net/ij/developer/source/ij/io/TiffDecoder.java.html (users/imagej/managing-memory: line 65) ok https://imagej.net/ij/docs/menus/edit.html#options (users/imagej/installing: line 13) ok https://imagej.net/ij/download.html (users/imagej/index: line 4) ok https://imagej.net/ij/index.html (formats/gatan-digital-micrograph: line 26) ok https://imagej.net/ij/plugins/DM3_Reader.html ( formats/gif: line 27) ok https://imagej.net/ij/plugins/agr.html ( formats/avi: line 27) ok https://imagej.net/ij/plugins/avi-reader.html ( formats/avi: line 28) ok https://imagej.net/ij/plugins/avi.html ( about/index: line 64) ok https://imagej.net/ij/list.html (formats/bio-rad-pic: line 27) ok https://imagej.net/ij/plugins/biorad.html (formats/windows-bitmap: line 26) ok https://imagej.net/ij/plugins/bmp-writer.html (formats/bruker-mri: line 24) ok https://imagej.net/ij/plugins/bruker.html ( formats/eps: line 27) ok https://imagej.net/ij/plugins/eps-writer.html ( formats/gif: line 28) ok https://imagej.net/ij/plugins/gif-stack-writer.html ( formats/iplab: line 27) ok https://imagej.net/ij/plugins/iplab-reader.html (formats/zeiss-lsm: line 28) ok https://imagej.net/ij/plugins/lsm-reader.html ( formats/png: line 27) ok https://imagej.net/ij/plugins/png-writer.html (formats/simplepci-hcimage: line 9) ok https://hcimage.com (formats/deltavision: line 29) ok https://imagej.net/ij/plugins/track/delta.html (developers/python-dev: line 25) ok https://imagej.net/libs/scifio (users/imagej/index: line 29) ok https://imagej.net/plugins/view5d (developers/python-dev: line 25) ok https://imagej.net/software/imagej2 (formats/imspector-obf: line 31) ok https://imspectordocs.readthedocs.io/en/latest/fileformat.html ( users/itk/index: line 4) ok https://itk.org/ (users/imglib/index: line 4) ok https://imglib2.net/ (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DateTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DateTools.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DataTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DataTools.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/DebugTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/DebugTools.html (developers/reader-guide: line 146) redirect 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https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Location.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/LogbackTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/LogbackTools.html (developers/logging: line 29) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/Log4jTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/Log4jTools.html (developers/components: line 187) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/RandomAccessInputStream.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/RandomAccessInputStream.html (developers/components: line 187) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/RandomAccessOutputStream.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/RandomAccessOutputStream.html (developers/service: line 37) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/services/Service.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/services/Service.html (developers/service: line 97) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/services/ServiceFactory.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/services/ServiceFactory.html (developers/components: line 194) redirect https://javadoc.io/page/org.openmicroscopy/ome-common/latest/loci/common/xml/XMLTools.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-common/6.0.24/loci/common/xml/XMLTools.html (developers/file-reader: line 83) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/file-reader: line 83) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/units/quantity/Length.html#value-ome.units.unit.Unit- - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/units/quantity/Length.html (developers/matlab-dev: line 203) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataRetrieve.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataRetrieve.html (developers/matlab-dev: line 311) redirect https://javadoc.io/page/org.openmicroscopy/ome-xml/latest/ome/xml/meta/MetadataStore.html - with See Other to https://javadoc.io/static/org.openmicroscopy/ome-xml/6.3.6/ome/xml/meta/MetadataStore.html (developers/java-library: line 164) ok https://javaee.github.io/jaxb-v2/ ( formats/jpx: line 9) ok https://jpeg.org/jpeg2000/ ( about/index: line 58) ok https://lists.openmicroscopy.org.uk/pipermail/ome-devel ( about/index: line 61) ok https://lists.openmicroscopy.org.uk/pipermail/ome-users (developers/java-library: line 107) ok https://junit.org/junit4/ ( about/index: line 66) ok https://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy (developers/components: line 96) ok https://libjpeg-turbo.org ( formats/dicom: line 35) ok https://learn.canceridc.dev/data/downloading-data (developers/java-library: line 227) ok https://logback.qos.ch ( about/index: line 142) ok https://loci.wisc.edu/bio-formats/ (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/java-opts-file.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/java-opts-file.html (users/visbio/index: line 4) ok https://loci.wisc.edu/visbio/ (developers/matlab-dev: line 56) redirect https://mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html - permanently to https://www.mathworks.com/help/matlab/matlab_env/matlab-startup-folder.html (developers/matlab-dev: line 36) redirect https://mathworks.com/help/matlab/ref/prefdir.html - permanently to https://www.mathworks.com/help/matlab/ref/prefdir.html (users/matlab/index: line 15) redirect https://mathworks.com/matlabcentral/answers/index - permanently to https://www.mathworks.com/matlabcentral/answers/index (formats/micro-manager: line 26) ok https://micro-manager.org/ (users/micromanager/index: line 4) ok https://micro-manager.org (users/micromanager/index: line 60) ok https://micro-manager.org/Micro-Manager_User's_Guide#files-on-disk (developers/matlab-dev: line 29) redirect https://mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html - permanently to https://www.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html (users/mipav/index: line 4) ok https://mipav.cit.nih.gov/ ( about/whats-new: line 3526) ok https://ome-model.readthedocs.io/en/stable/ ( formats/avi: line 68) redirect https://msdn.microsoft.com/en-us/library/ms779636.aspx - permanently to https://learn.microsoft.com/en-us/previous-versions//ms779636(v=vs.85)?redirectedfrom=MSDN (developers/java-library: line 146) ok https://min.io (formats/ome-tiff: line 7) ok https://ome-model.readthedocs.io/en/stable/ome-tiff/index.html ( developers/wsi: line 57) ok https://ome-model.readthedocs.io/en/stable/ome-tiff/specification.html ( developers/wsi: line 81) redirect https://ome-model.readthedocs.io/en/stable//omero-pyramid/index.html - with Found to https://ome-model.readthedocs.io/en/stable/omero-pyramid/index.html ( about/whats-new: line 3359) redirect https://ome-model.readthedocs.io/en/stable//schemas/january-2015.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/january-2015.html ( about/index: line 168) ok 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about/index: line 87) ok https://semver.org ( formats/dicom: line 35) ok https://portal.imaging.datacommons.cancer.gov/ (developers/java-library: line 53) ok https://sissource.ethz.ch/sispub/base/ (developers/java-library: line 64) ok https://spdx.org/licenses/BSD-3-Clause.html (developers/java-library: line 52) ok https://spdx.org/licenses/Apache-2.0.html (developers/java-library: line 109) ok https://spdx.org/licenses/CPL-1.0.html (developers/java-library: line 184) ok https://spdx.org/licenses/GPL-2.0.html (developers/java-library: line 127) ok https://spdx.org/licenses/MIT.html (developers/java-library: line 91) ok https://spdx.org/licenses/BSD-2-Clause.html (developers/java-library: line 205) ok https://spdx.org/licenses/EPL-1.0.html (developers/java-library: line 158) ok https://square.github.io/okhttp/ (formats/quicktime-movie: line 27) redirect https://support.apple.com/downloads/quicktime - with Found to https://support.apple.com/en-us/docs (developers/java-library: line 161) ok https://square.github.io/okio/ (formats/quicktime-movie: line 74) redirect https://support.apple.com/quicktime - permanently to https://support.apple.com/guide/quicktime-player/welcome/mac (developers/index: line 76) ok https://trello.com/b/4EXb35xQ/getting-started (users/octave/index: line 34) ok https://docs.octave.org/interpreter/Making-Java-Classes-Available.html (developers/java-library: line 128) ok https://testng.org/ (formats/zeiss-lsm: line 64) ok https://svi.nl/HomePage (developers/non-java-code: line 11) ok https://uw-loci.github.io/interfacing-non-java-code (developers/matlab-dev: line 77) ok https://uk.mathworks.com/matlabcentral/answers/92813-how-do-i-increase-the-heap-space-for-the-java-vm-in-matlab-6-0-r12-and-later-versions (developers/matlab-dev: line 75) ok https://uk.mathworks.com/help/matlab/matlab_external/java-heap-memory-preferences.html ( about/index: line 16) ok https://uw-loci.github.io/oss ( about/index: line 130) ok https://uw-loci.github.io/why-java 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https://www.apple.com (formats/quicktime-movie: line 10) ok https://www.apple.com/ (formats/khoros-viff-bitmap: line 11) ok https://www.accusoft.com/company/ ( formats/dicom: line 36) redirect https://wsi.orthanc-server.com/orthanc/app/explorer.html - permanently to https://orthanc.uclouvain.be/wsi/ (formats/alicona-3d: line 10) ok https://www.alicona.com/ (users/focalpoint/index: line 4) ok https://www.bioinformatics.babraham.ac.uk/projects/focalpoint/ (formats/becker-hickl-fifo: line 10) ok https://www.becker-hickl.com/ (formats/becker-hickl-spcimage: line 30) ok https://www.becker-hickl.com/products/spcimage/ (formats/iplab-mac: line 10) ok https://www.biovis.com/ (formats/becker-hickl-fifo: line 28) ok https://www.becker-hickl.com/literature/handbooks/ (formats/bruker-mri: line 7) redirect https://www.bruker.com/ - permanently to https://www.bruker.com/en.html (formats/prairie-tech-tiff: line 9) redirect https://www.bruker.com/products/fluorescence-microscopes/ultima-multiphoton-microscopy/ultima-in-vitro/overview.html - permanently to https://www.bruker.com/en/products-and-solutions/fluorescence-microscopy/multiphoton-microscopes/ultima-in-vitro.html ( formats/iplab: line 11) redirect https://www.biovis.com/iplab.htm - permanently to https://www.biovis.com/manufacturers.html#legacy.html (users/cellprofiler/index: line 4) ok https://www.broadinstitute.org/imaging ( formats/mrc: line 12) ok https://www.ccpem.ac.uk/mrc_format/mrc_format.php ( formats/mrc: line 61) ok https://www.ccpem.ac.uk/mrc_format/mrc2014.php#note8 ( formats/dicom: line 27) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMFileConvertorsAndViewers ( formats/dicom: line 33) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMImageSamples ( formats/dicom: line 28) ok https://www.dclunie.com/medical-image-faq/html/part8.html#DICOMToolkits ( formats/dicom: line 72) ok https://www.dicomstandard.org/ (formats/kodak-bip: line 9) ok https://www.carestream.com/en/us (formats/hamamatsu-aquacosmos-naf: line 9) redirect https://www.hamamatsu.com/ - with Found to https://www.hamamatsu.com/jp/en.html (formats/hamamatsu-ndpi: line 29) ok https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html ( formats/dicom: line 9) ok https://www.dicomstandard.org/dsc/ ( about/index: line 84) ok https://www.ietf.org/rfc/rfc2119.txt ( formats/imacon: line 10) ok https://www.hasselblad.com/ ( formats/dicom: line 41) ok https://www.dicomstandard.org/current/ (formats/hitachi-s-4800: line 9) ok https://www.hitachi-hightech.com/file/us/pdf/library/technical/Hitachi_4800_STEM.pdf ( about/whats-new: line 3296) ok https://www.intelligent-imaging.com (formats/3i-slidebook: line 52) ok https://www.intelligent-imaging.com/slidebook (formats/canon-dng: line 26) ok https://www.irfanview.com/ (formats/3i-slidebook-7: line 27) ok https://www.intelligent-imaging.com/slidebook/ ( formats/jpeg: line 56) redirect https://www.jpeg.org/jpeg/index.html - permanently to https://jpeg.org/jpeg/index.html (formats/ionpath-mibi: line 9) ok https://www.ionpath.com/ ( formats/jpk: line 9) redirect https://www.jpk.com - permanently to https://www.bruker.com/de/products-and-solutions/microscopes/bioafm.html?utm_source=JPK (users/knime/index: line 4) ok https://www.knime.com/ ( formats/quesant: line 11) redirect https://www.kla-tencor.com/ - permanently to https://www.kla.com/ (formats/leica-lcs-lei: line 9) ok https://www.leica-microsystems.com/ (formats/leica-lif: line 27) ok https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/ (formats/minolta-mrw: line 9) redirect https://www.konicaminolta.com/uk-en/index.html - permanently to https://www.konicaminolta.co.uk/en-gb ( formats/jeol: line 10) redirect https://www.jeol.co.jp/en/ - permanently to https://www.jeol.com/ (formats/aperio-afi: line 10) ok https://www.leicabiosystems.com/ (formats/aperio-afi: line 49) ok https://www.leicabiosystems.com/digital-pathology/manage/aperio-imagescope/ (users/graphic-con/index: line 4) ok https://www.lemkesoft.de/en/image-editing-slideshow-browser-batch-conversion-metadata-and-more-on-your-mac/ (users/matlab/index: line 4) ok https://www.mathworks.com/products/matlab.html ( formats/tiff: line 33) ok https://www.loc.gov/preservation/digital/formats/fdd/fdd000022.shtml (developers/java-library: line 206) ok https://www.mchange.com/projects/mchange-commons-java/ (developers/java-library: line 203) ok https://www.mchange.com/projects/c3p0/ ( formats/avi: line 9) ok https://www.microsoft.com/ (formats/amnis-flowsight: line 10) -ignored- https://www.merckmillipore.com: service unavailable (formats/mikroscan-tiff: line 10) ok https://www.mikroscan.com/ ( about/whats-new: line 70) ok https://www.mail-archive.com/tiff@lists.osgeo.org/msg00421.html (formats/metamorph-75-tiff: line 10) ok https://www.moleculardevices.com/ (formats/metamorph-stack-stk: line 60) redirect https://www.moleculardevices.com/systems/metamorph-research-imaging/metamorph-microscopy-automation-and-image-analysis-software - permanently to https://www.moleculardevices.com/products/cellular-imaging-systems/high-content-analysis/metamorph-microscopy (formats/animated-png: line 27) ok https://www.mozilla.org/en-US/firefox (formats/lambert-instruments-flim: line 9) redirect https://www.lambertinstruments.com - permanently to https://lambertinstruments.com/ ( formats/nifti: line 9) ok https://www.nih.gov/ ( about/index: line 36) redirect https://www.ncbi.nlm.nih.gov/pubmed/20513764 - permanently to https://pubmed.ncbi.nlm.nih.gov/20513764/ ( about/whats-new: line 378) redirect https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489422/ - permanently to https://pmc.ncbi.nlm.nih.gov/articles/PMC6489422/ (formats/nikon-nis-elements-nd2: line 9) redirect https://www.nikonusa.com/en/index.page - permanently to https://www.nikonusa.com ( formats/nifti: line 28) ok https://www.nitrc.org/docman/view.php/26/204/TheNIfTI (formats/nikon-nis-elements-nd2: line 26) redirect https://www.nikoninstruments.com/Products/Software/NIS-Elements-Advanced-Research/NIS-Elements-Viewer - permanently to https://www.microscope.healthcare.nikon.com/products/software/nis-elements/nis-elements-advanced-research ( users/idl/index: line 4) ok https://www.nv5geospatialsoftware.com/Products/IDL (formats/olympus-fluoview-fv1000: line 26) ok https://www.olympus-lifescience.com/en/ ( about/whats-new: line 2285) ok https://www.openmicroscopy.org (developers/matlab-dev: line 80) ok https://www.openmicroscopy.org/2015/04/28/omero-bio-formats-5-1-1.html (users/comlinetools/mkfake: line 19) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/SPW_xsd.html#PlateAcquisition_ID (formats/olympus-sis-tiff: line 9) ok https://www.olympus-sis.com/ (formats/cellsens-vsi: line 9) ok https://www.olympus-global.com (metadata-summary: line 974) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Description (users/octave/index: line 4) ok https://octave.org (metadata-summary: line 969) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#AnnotationRef_ID (metadata-summary: line 2094) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData (metadata-summary: line 979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_ID (formats/zeiss-czi: line 60) ok https://www.microsoft.com/en-us/download/details.aspx?id=48145 (metadata-summary: line 984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Annotation_Namespace (metadata-summary: line 964) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Arc_Type (metadata-summary: line 989) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BooleanAnnotation_Value (metadata-summary: line 2099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_BigEndian (metadata-summary: line 2109) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Compression (metadata-summary: line 2104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#BinData_Length (metadata-summary: line 994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_AcquisitionMode (metadata-summary: line 1009) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ContrastMethod (metadata-summary: line 1004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Color (metadata-summary: line 1014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_EmissionWavelength (metadata-summary: line 1019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ExcitationWavelength (metadata-summary: line 1029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_Fluor (metadata-summary: line 1039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_IlluminationType (metadata-summary: line 1034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_ID (metadata-summary: line 1059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel_NDFilter (metadata-summary: line 1104) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#CommentAnnotation_Value 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1139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dataset_Name (metadata-summary: line 1209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Gain (metadata-summary: line 1204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Binning (metadata-summary: line 1214) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ID (metadata-summary: line 1224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_ReadOutRate (metadata-summary: line 1219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Offset (metadata-summary: line 1229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DetectorSettings_Voltage (metadata-summary: line 1144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_AmplificationGain (metadata-summary: line 1154) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Gain (metadata-summary: line 1159) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_ID (metadata-summary: line 1179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Offset (metadata-summary: line 1194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Voltage (metadata-summary: line 1189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Type (metadata-summary: line 1284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DoubleAnnotation_Value (metadata-summary: line 1574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#DichroicRef_ID (metadata-summary: line 1199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Detector_Zoom (metadata-summary: line 1239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Dichroic_ID (metadata-summary: line 1324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusX (metadata-summary: line 1389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Description (metadata-summary: line 1664) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimentRef_ID (metadata-summary: line 1329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_RadiusY (metadata-summary: line 1374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_X (metadata-summary: line 1379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Ellipse_Y (metadata-summary: line 1454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Description (metadata-summary: line 1399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_ID (metadata-summary: line 1404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experiment_Type (metadata-summary: line 1119) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroupRef_ID (metadata-summary: line 1464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_ID (metadata-summary: line 1474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterGroup_Name (metadata-summary: line 1124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ExperimenterRef_ID (metadata-summary: line 1414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Email (metadata-summary: line 1419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_FirstName (metadata-summary: line 1424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_ID (metadata-summary: line 1429) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_Institution (metadata-summary: line 1434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_LastName (metadata-summary: line 1439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_MiddleName (metadata-summary: line 1444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Experimenter_UserName (metadata-summary: line 1579) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterRef_ID (metadata-summary: line 1509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filament_Type (metadata-summary: line 1589) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSet_ID (metadata-summary: line 1024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FilterSetRef_ID (metadata-summary: line 1619) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Description (metadata-summary: line 1539) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_FilterWheel (metadata-summary: line 1544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_ID (metadata-summary: line 1624) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#FolderRef_ID (metadata-summary: line 1569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Filter_Type (metadata-summary: line 1629) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_ID (metadata-summary: line 1649) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_AcquisitionDate (metadata-summary: line 1659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Description (metadata-summary: line 1639) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Folder_Name (metadata-summary: line 1134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImageRef_ID (metadata-summary: line 1704) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_AirPressure (metadata-summary: line 1679) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_ID (metadata-summary: line 1709) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_CO2Percent (metadata-summary: line 1694) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Image_Name (metadata-summary: line 1714) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Humidity (metadata-summary: line 1684) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#InstrumentRef_ID (metadata-summary: line 1719) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ImagingEnvironment_Temperature (metadata-summary: line 1729) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Instrument_ID (metadata-summary: line 1809) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_X (metadata-summary: line 1814) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Label_Y (metadata-summary: line 1819) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_FrequencyMultiplication (metadata-summary: line 1829) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_LaserMedium (metadata-summary: line 1849) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_PockelCell (metadata-summary: line 1859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Pulse (metadata-summary: line 1869) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_RepetitionRate (metadata-summary: line 1879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Tuneable (metadata-summary: line 1884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Type (metadata-summary: line 1469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Leader_ID (metadata-summary: line 1889) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Laser_Wavelength (metadata-summary: line 1044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Attenuation (metadata-summary: line 1049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_ID (metadata-summary: line 1054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSourceSettings_Wavelength (metadata-summary: line 934) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_ID (metadata-summary: line 954) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LightSource_Power (metadata-summary: line 1979) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerEnd (metadata-summary: line 1984) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_MarkerStart (metadata-summary: line 2029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X1 (metadata-summary: line 2034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_X2 (metadata-summary: line 2039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y1 (metadata-summary: line 2089) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#LongAnnotation_Value (metadata-summary: line 2044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Line_Y2 (metadata-summary: line 939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_LotNumber (metadata-summary: line 944) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Manufacturer (metadata-summary: line 949) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_Model (metadata-summary: line 959) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ManufacturerSpec_SerialNumber (metadata-summary: line 2134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Height (metadata-summary: line 2194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_X (metadata-summary: line 2189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Width (metadata-summary: line 1689) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulationRef_ID (metadata-summary: line 2199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Mask_Y (metadata-summary: line 2219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_Type (metadata-summary: line 2209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#MicrobeamManipulation_ID (metadata-summary: line 2259) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Microscope_Type (metadata-summary: line 2329) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_CorrectionCollar (metadata-summary: line 2334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_ID (metadata-summary: line 2269) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_CalibratedMagnification (metadata-summary: line 2344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex (metadata-summary: line 2339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ObjectiveSettings_Medium (metadata-summary: line 2274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Correction (metadata-summary: line 2279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_ID (metadata-summary: line 2284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Immersion (metadata-summary: line 2289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_Iris (metadata-summary: line 2294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_LensNA (metadata-summary: line 2314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_NominalMagnification (metadata-summary: line 2324) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Objective_WorkingDistance (metadata-summary: line 2364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_ID (metadata-summary: line 2354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_BigEndian (metadata-summary: line 2359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_DimensionOrder (metadata-summary: line 2369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Interleaved (metadata-summary: line 2374) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeX (metadata-summary: line 2384) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeZ (metadata-summary: line 2379) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeY (metadata-summary: line 2389) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SignificantBits (metadata-summary: line 2394) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeC (metadata-summary: line 2399) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeT (metadata-summary: line 2409) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeY (metadata-summary: line 2404) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeX (metadata-summary: line 2414) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_SizeZ (metadata-summary: line 2419) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_TimeIncrement (metadata-summary: line 2424) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pixels_Type (metadata-summary: line 2444) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_HashSHA1 (metadata-summary: line 2434) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_DeltaT (metadata-summary: line 2439) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_ExposureTime (metadata-summary: line 2449) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionX (metadata-summary: line 2454) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionY (metadata-summary: line 2459) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_PositionZ (metadata-summary: line 2544) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Description (metadata-summary: line 2464) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheC (metadata-summary: line 2469) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheT (metadata-summary: line 2474) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plane_TheZ (metadata-summary: line 2549) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_EndTime (metadata-summary: line 2554) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_ID (metadata-summary: line 2564) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_Name (metadata-summary: line 2559) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_MaximumFieldCount (metadata-summary: line 2494) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Description (metadata-summary: line 2484) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ColumnNamingConvention (metadata-summary: line 2569) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#PlateAcquisition_StartTime (metadata-summary: line 2489) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Columns (metadata-summary: line 2499) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ExternalIdentifier (metadata-summary: line 2504) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_ID (metadata-summary: line 2509) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Name (metadata-summary: line 2514) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_RowNamingConvention (metadata-summary: line 2519) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Rows (metadata-summary: line 2524) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_Status (metadata-summary: line 2529) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginX (metadata-summary: line 2534) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Plate_WellOriginY (metadata-summary: line 2654) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_X (metadata-summary: line 2659) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Point_Y (metadata-summary: line 2844) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Description (metadata-summary: line 2779) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerEnd (metadata-summary: line 2699) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polygon_Points (metadata-summary: line 2784) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_MarkerStart (metadata-summary: line 2859) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_ID (metadata-summary: line 2864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Project_Name (metadata-summary: line 2874) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Description (metadata-summary: line 2789) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Polyline_Points (metadata-summary: line 1644) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROIRef_ID (metadata-summary: line 2894) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Description (metadata-summary: line 1864) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Pump_ID (metadata-summary: line 3244) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ReagentRef_ID (metadata-summary: line 2899) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ID (metadata-summary: line 2879) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_ID (metadata-summary: line 2884) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#ROI_Name (metadata-summary: line 2904) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_Name (metadata-summary: line 2909) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Reagent_ReagentIdentifier (metadata-summary: line 3014) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Description (metadata-summary: line 2939) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Height (metadata-summary: line 2994) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Width (metadata-summary: line 2999) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_X (metadata-summary: line 3004) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Rectangle_Y (metadata-summary: line 3019) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ID (metadata-summary: line 3034) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolDescription (metadata-summary: line 3024) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Name (metadata-summary: line 3039) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ProtocolIdentifier (metadata-summary: line 3044) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetDescription (metadata-summary: line 3049) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_ReagentSetIdentifier (metadata-summary: line 3029) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Screen_PlateRef_ID (metadata-summary: line 3054) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Screen_Type (metadata-summary: line 1289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillColor (metadata-summary: line 1294) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FillRule (metadata-summary: line 1299) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontFamily (metadata-summary: line 1304) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontSize (metadata-summary: line 1309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_FontStyle (metadata-summary: line 1314) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_ID (metadata-summary: line 1319) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Locked (metadata-summary: line 1334) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeColor (metadata-summary: line 1339) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeDashArray (metadata-summary: line 1344) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_StrokeWidth (metadata-summary: line 1369) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Transform (metadata-summary: line 1349) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_Text (metadata-summary: line 1354) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheC (metadata-summary: line 1359) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheT (metadata-summary: line 1364) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Shape_TheZ (metadata-summary: line 3059) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Name (metadata-summary: line 3099) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TagAnnotation_Value (metadata-summary: line 3064) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_X (metadata-summary: line 3069) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Y (metadata-summary: line 3074) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#StageLabel_Z (metadata-summary: line 3124) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TermAnnotation_Value (metadata-summary: line 3129) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstC (metadata-summary: line 3134) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstT (metadata-summary: line 3139) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_FirstZ (metadata-summary: line 3144) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_IFD (metadata-summary: line 3149) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_PlaneCount (metadata-summary: line 3174) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TimestampAnnotation_Value (metadata-summary: line 3204) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TiffData_TiffData_UUID_FileName (metadata-summary: line 3179) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutIn (metadata-summary: line 3184) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutInTolerance (metadata-summary: line 3189) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOut (metadata-summary: line 3194) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_CutOutTolerance (metadata-summary: line 3209) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#UniversallyUniqueIdentifier (metadata-summary: line 3264) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_ID (metadata-summary: line 3199) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#TransmittanceRange_Transmittance (metadata-summary: line 2574) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSampleRef_ID (metadata-summary: line 3274) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Index (metadata-summary: line 3279) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionX (metadata-summary: line 3284) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_PositionY (metadata-summary: line 3289) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#WellSample_Timepoint (metadata-summary: line 3219) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Color (metadata-summary: line 3224) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Column (metadata-summary: line 3229) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalDescription (metadata-summary: line 3239) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ID (metadata-summary: line 3234) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_ExternalIdentifier (formats/ome-tiff: line 57) ok https://www.openmicroscopy.org/commercial-partners/#partnerships ( about/index: line 38) ok https://www.openmicroscopy.org/citing-ome ( about/index: line 72) ok https://www.openmicroscopy.org/omero/ (metadata-summary: line 3249) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Row ( about/whats-new: line 902) ok https://www.openmicroscopy.org/security/advisories/2021-SV4/ ( about/index: line 24) ok https://www.openmicroscopy.org/licensing ( about/index: line 56) ok https://www.openmicroscopy.org/support/ (metadata-summary: line 3309) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#XMLAnnotation_Value (metadata-summary: line 3254) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Well_Type (formats/mias-maia-scientific: line 9) ok https://www.selectscience.net/company/maia-scientific (formats/princeton-instruments-spe: line 9) redirect https://www.princetoninstruments.com - permanently to https://www.teledynevisionsolutions.com/company/about-teledyne-vision-solutions/teledyne-princeton-instruments/ ( formats/nef: line 27) ok https://www.outbackphoto.com/workshop/NEF_conversion/neffile1.zip ( formats/nef: line 56) ok https://www.outbackphoto.com/workshop/NEF_conversion/nefconversion.html (developers/logging: line 7) ok https://www.slf4j.org/manual.html#libraries ( formats/ecat7: line 9) redirect https://www.siemens.com/global/en/home.html - with Found to https://www.siemens.com/global/en.html ( formats/gif: line 11) ok https://www.unisys.com/ (developers/java-library: line 101) ok https://www.unidata.ucar.edu/software/netcdf-java/ (formats/tecan-spark-cyto-workspace: line 10) ok https://www.tecan.com/ ( formats/gif: line 33) ok https://www.w3.org/Graphics/GIF/spec-gif89a.txt ( formats/i2i: line 9) ok https://www.umassmed.edu/ (formats/zeiss-axiovision-tiff: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html (formats/bio-rad-pic: line 11) redirect https://www.zeiss.com - permanently to https://www.zeiss.com/corporate/en/home.html (formats/zeiss-axiovision-zvi: line 9) redirect https://www.zeiss.com/microscopy - permanently to https://www.zeiss.com/microscopy/en/home.html?vaURL=www.zeiss.com/microscopy (formats/zeiss-axiovision-zvi: line 27) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html (formats/pcx-pc-paintbrush: line 49) ok https://www.zeiss.com/microscopy/en/service-support/downloads.html (formats/zeiss-axiovision-zvi: line 67) ok https://www.zeiss.com/microscopy/en/service-support/support/discontinued-products.html (formats/zeiss-czi: line 7) ok https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.html ( formats/seiko: line 10) redirect https://www.seiko.co.jp/en - permanently to https://www.seiko.co.jp:443/en/ ( about/whats-new: line 876) ok https://zenodo.org/ (formats/cellvoyager: line 10) ok https://www.yokogawa.com/ (about/bug-reporting: line 64) redirect https://zenodo.org/communities/bio-formats - with Found to https://zenodo.org/communities/bio-formats/records ( formats/mrc: line 11) ok https://www2.mrc-lmb.cam.ac.uk/ build finished with problems. [ERROR] Command execution failed. org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal (DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute (DefaultExecutor.java:166) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:804) at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:751) at org.codehaus.mojo.exec.ExecMojo.execute (ExecMojo.java:313) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289) at org.apache.maven.cli.MavenCli.main (MavenCli.java:193) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:566) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347) [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 05:28 min [INFO] Finished at: 2024-11-26T00:23:00Z [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.6.0:exec (sphinx-linkcheck) on project bio-formats-documentation: Command execution failed.: Process exited with an error: 1 (Exit value: 1) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Build step 'Execute shell' marked build as failure Finished: FAILURE