Started by upstream project "Trigger" build number 43
originally caused by:
 Started by timer
Running as SYSTEM
Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-push/bio-formats-build/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
Fetching upstream changes from https://github.com/ome/bio-formats-build
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision a9a7db5b1f11cb259476bcd4817162dc2807c45b (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a9a7db5b1f11cb259476bcd4817162dc2807c45b # timeout=10
Commit message: "Merge pull request #600 from ome/dependabot/submodules/bio-formats-documentation-afd4c11"
 > git rev-list --no-walk 25a1f5974ec0daab09f08ab364381f68ad853947 # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.ome-common-java.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10
 > git config --get submodule.ome-model.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10
 > git config --get submodule.ome-poi.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10
 > git config --get submodule.ome-mdbtools.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10
 > git config --get submodule.ome-jai.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10
 > git config --get submodule.ome-codecs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10
 > git config --get submodule.ome-metakit.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10
 > git config --get submodule.ome-stubs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10
 > git config --get submodule.bioformats.url # timeout=10
 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10
 > git config --get submodule.bio-formats-documentation.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10
 > git config --get submodule.bio-formats-examples.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10
 > git config --get submodule.ZarrReader.url # timeout=10
 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10
 > git submodule update --init --recursive --remote ome-common-java # timeout=10
 > git submodule update --init --recursive --remote ome-model # timeout=10
 > git submodule update --init --recursive --remote ome-poi # timeout=10
 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10
 > git submodule update --init --recursive --remote ome-jai # timeout=10
 > git submodule update --init --recursive --remote ome-codecs # timeout=10
 > git submodule update --init --recursive --remote ome-metakit # timeout=10
 > git submodule update --init --recursive --remote ome-stubs # timeout=10
 > git submodule update --init --recursive --remote bioformats # timeout=10
 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10
 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10
 > git submodule update --init --recursive --remote ZarrReader # timeout=10
[BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins17995203671054507320.sh
+ python3 -mvenv venv
FATAL: command execution failed
java.nio.channels.ClosedChannelException
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
	at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
	at hudson.remoting.Channel.close(Channel.java:1497)
	at hudson.remoting.Channel.close(Channel.java:1450)
	at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
	at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
	at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
	at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
	at hudson.model.Queue._withLock(Queue.java:1401)
	at hudson.model.Queue.withLock(Queue.java:1275)
	at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
	at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
	at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
	at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
	at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
	at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
	at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
	at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
	at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
	at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
	at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.Server.doStop(Server.java:517)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at winstone.Launcher.shutdown(Launcher.java:442)
	at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: java.io.IOException: Backing channel 'JNLP4-connect connection from merge-ci-testintegration-1.merge-ci_omero-network/172.19.0.12:44464' is disconnected.
	at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:215)
	at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:285)
	at jdk.proxy2/jdk.proxy2.$Proxy186.isAlive(Unknown Source)
	at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1212)
	at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1204)
	at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:195)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:145)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
	at hudson.model.Build$BuildExecution.build(Build.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:164)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
	at hudson.model.Run.execute(Run.java:1895)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
	at hudson.model.ResourceController.execute(ResourceController.java:101)
	at hudson.model.Executor.run(Executor.java:442)
FATAL: Unable to delete script file /tmp/jenkins17995203671054507320.sh
java.nio.channels.ClosedChannelException
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
	at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
	at hudson.remoting.Channel.close(Channel.java:1497)
	at hudson.remoting.Channel.close(Channel.java:1450)
	at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
	at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
	at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
	at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
	at hudson.model.Queue._withLock(Queue.java:1401)
	at hudson.model.Queue.withLock(Queue.java:1275)
	at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
	at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
	at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
	at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
	at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
	at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
	at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
	at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
	at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
	at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
	at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.Server.doStop(Server.java:517)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at winstone.Launcher.shutdown(Launcher.java:442)
	at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: hudson.remoting.ChannelClosedException: Channel "hudson.remoting.Channel@4a08430f:JNLP4-connect connection from merge-ci-testintegration-1.merge-ci_omero-network/172.19.0.12:44464": Remote call on JNLP4-connect connection from merge-ci-testintegration-1.merge-ci_omero-network/172.19.0.12:44464 failed. The channel is closing down or has closed down
	at hudson.remoting.Channel.call(Channel.java:996)
	at hudson.FilePath.act(FilePath.java:1230)
	at hudson.FilePath.act(FilePath.java:1219)
	at hudson.FilePath.delete(FilePath.java:1766)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:163)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
	at hudson.model.Build$BuildExecution.build(Build.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:164)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
	at hudson.model.Run.execute(Run.java:1895)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
	at hudson.model.ResourceController.execute(ResourceController.java:101)
	at hudson.model.Executor.run(Executor.java:442)
Build step 'Execute shell' marked build as failure
ERROR: Step ‘Archive the artifacts’ failed: no workspace for BIOFORMATS-push #41
Finished: FAILURE