Started by upstream project "Trigger" build number 98 originally caused by: Started by timer Running as SYSTEM Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-push/bio-formats-build/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/ome/bio-formats-build > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision a9a7db5b1f11cb259476bcd4817162dc2807c45b (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f a9a7db5b1f11cb259476bcd4817162dc2807c45b # timeout=10 Commit message: "Merge pull request #600 from ome/dependabot/submodules/bio-formats-documentation-afd4c11" > git rev-list --no-walk a9a7db5b1f11cb259476bcd4817162dc2807c45b # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.ome-common-java.url # timeout=10 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10 > git config --get submodule.ome-model.url # timeout=10 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10 > git config --get submodule.ome-poi.url # timeout=10 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10 > git config --get submodule.ome-mdbtools.url # timeout=10 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10 > git config --get submodule.ome-jai.url # timeout=10 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10 > git config --get submodule.ome-codecs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10 > git config --get submodule.ome-metakit.url # timeout=10 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10 > git config --get submodule.ome-stubs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10 > git config --get submodule.bioformats.url # timeout=10 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10 > git config --get submodule.bio-formats-documentation.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10 > git config --get submodule.bio-formats-examples.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10 > git config --get submodule.ZarrReader.url # timeout=10 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10 > git submodule update --init --recursive --remote ome-common-java # timeout=10 > git submodule update --init --recursive --remote ome-model # timeout=10 > git submodule update --init --recursive --remote ome-poi # timeout=10 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10 > git submodule update --init --recursive --remote ome-jai # timeout=10 > git submodule update --init --recursive --remote ome-codecs # timeout=10 > git submodule update --init --recursive --remote ome-metakit # timeout=10 > git submodule update --init --recursive --remote ome-stubs # timeout=10 > git submodule update --init --recursive --remote bioformats # timeout=10 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10 > git submodule update --init --recursive --remote ZarrReader # timeout=10 [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins11731134541346958826.sh + python3 -mvenv venv + source /home/omero/workspace/BIOFORMATS-push/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-push/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.0) + pip install -U scc Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1) Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) + PATH=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts:/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + MERGE_OPTIONS='--no-ask --reset --comment -S success-only' + cd bio-formats-build + echo 'Merge base repository (no submodule updates)' Merge base repository (no submodule updates) + scc merge --no-ask --reset --comment -S success-only --shallow master 2024-06-09 00:01:15,423 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-06-09 00:01:15,423 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-06-09 00:01:15,424 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-06-09 00:01:15,424 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-06-09 00:01:15,424 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-06-09 00:01:15,424 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-06-09 00:01:36,619 [ scc.merge] INFO Repository: ome/bio-formats-build 2024-06-09 00:01:36,619 [ scc.merge] INFO Already up to date. 2024-06-09 00:01:36,619 [ scc.merge] INFO 2024-06-09 00:01:36,619 [ scc.merge] INFO Merged PRs: 2024-06-09 00:01:36,619 [ scc.merge] INFO - PR 604 dependabot[bot] 'Bump bio-formats-examples from `74d4def` to `9955ace`' 2024-06-09 00:01:36,619 [ scc.merge] INFO - PR 608 dependabot[bot] 'Bump bioformats from `682bc7e` to `bf2c462`' 2024-06-09 00:01:36,619 [ scc.merge] INFO - PR 609 dependabot[bot] 'Bump bio-formats-documentation from `afd4c11` to `7a2cfff`' 2024-06-09 00:01:36,619 [ scc.merge] INFO - PR 610 dependabot[bot] 'Bump ome-model from `db24e3a` to `be5b189`' 2024-06-09 00:01:36,619 [ scc.merge] INFO - PR 611 dependabot[bot] 'Bump ome-codecs from `7f3130a` to `c95aee4`' 2024-06-09 00:01:36,619 [ scc.merge] INFO + git submodule sync Synchronizing submodule url for 'ZarrReader' Synchronizing submodule url for 'bio-formats-documentation' Synchronizing submodule url for 'bio-formats-examples' Synchronizing submodule url for 'bioformats' Synchronizing submodule url for 'ome-codecs' Synchronizing submodule url for 'ome-common-java' Synchronizing submodule url for 'ome-jai' Synchronizing submodule url for 'ome-mdbtools' Synchronizing submodule url for 'ome-metakit' Synchronizing submodule url for 'ome-model' Synchronizing submodule url for 'ome-poi' Synchronizing submodule url for 'ome-stubs' + git submodule update --remote --recursive Submodule path 'ZarrReader': checked out '9a9e662a3b00b37d51100df7256b11e4036ae693' + echo 'Merge all submodules using repository configuration:' Merge all submodules using repository configuration: + cat scripts/repositories.yml base-branch: master submodules: ome-common-java: base-branch: master bioformats: base-branch: develop bio-formats-documentation: base-branch: master bio-formats-examples: base-branch: master ome-codecs: base-branch: master ome-common-java: base-branch: master ome-jai: base-branch: master ome-mdbtools: base-branch: master ome-metakit: base-branch: master ome-model: base-branch: master ome-poi: base-branch: master ome-stubs: base-branch: master ZarrReader: base-branch: main ++ pwd + scc merge --repository-config=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts/repositories.yml --no-ask --reset --comment -S success-only --update-gitmodules --push merge_ci master Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2024-06-09 00:01:51,912 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2024-06-09 00:02:11,809 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-06-09 00:02:11,809 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-06-09 00:02:11,809 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-06-09 00:02:11,809 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-06-09 00:02:11,809 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-06-09 00:02:11,809 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-06-09 00:02:29,962 [ scc.git] INFO Overriding base-branch from master to main 2024-06-09 00:02:58,378 [ scc.git] INFO Overriding base-branch from master to develop 2024-06-09 00:03:37,648 [ scc.git] INFO - PR 174 jburel 'Remove docs' Conflicting PR. Removed from build [BIOFORMATS-push#96](https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/96/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/96/consoleText) for more details. Possible conflicts: - Upstream changes - docs/sphinx/ome-tiff/index.rst - docs/sphinx/pom.xml --conflicts 2024-06-09 00:03:43,554 [ scc.merge] INFO Repository: ome/bio-formats-build 2024-06-09 00:03:43,554 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,554 [ scc.merge] INFO 2024-06-09 00:03:43,554 [ scc.merge] INFO Merged PRs: 2024-06-09 00:03:43,554 [ scc.merge] INFO - PR 604 dependabot[bot] 'Bump bio-formats-examples from `74d4def` to `9955ace`' 2024-06-09 00:03:43,554 [ scc.merge] INFO - PR 608 dependabot[bot] 'Bump bioformats from `682bc7e` to `bf2c462`' 2024-06-09 00:03:43,554 [ scc.merge] INFO - PR 609 dependabot[bot] 'Bump bio-formats-documentation from `afd4c11` to `7a2cfff`' 2024-06-09 00:03:43,554 [ scc.merge] INFO - PR 610 dependabot[bot] 'Bump ome-model from `db24e3a` to `be5b189`' 2024-06-09 00:03:43,554 [ scc.merge] INFO - PR 611 dependabot[bot] 'Bump ome-codecs from `7f3130a` to `c95aee4`' 2024-06-09 00:03:43,554 [ scc.merge] INFO 2024-06-09 00:03:43,554 [ scc.merge] INFO Repository: ome/ZarrReader 2024-06-09 00:03:43,554 [ scc.merge] INFO Excluded PRs: 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment) 2024-06-09 00:03:43,555 [ scc.merge] INFO Updating 31e9353..9a9e662 2024-06-09 00:03:43,555 [ scc.merge] INFO Previously merged: 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 90 dgault 'Bump version to 0.5.2-SNAPSHOT' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 89 dgault 'Bump version to 0.5.1' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 88 dgault 'Add Change Log for 0.5.1' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 87 dgault 'Bump formats-api version to 7.3.0' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 86 dgault 'Bumping version to 0.5.1-SNAPSHOT' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 85 dgault 'Bump version to 0.5.0' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 84 dgault 'ChangeLog: Add missing entry for PR #75' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 75 dgault 'Update handling and parsing of acquisition metadata' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 73 dgault 'Update ReadMe and Change Log' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 82 dgault 'Reintroduce S3FileSystemStore' 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO Repository: ome/bio-formats-documentation 2024-06-09 00:03:43,555 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO Merged PRs: 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 376 dgault 'Remove link to barre.dev samples' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 377 dgault 'Add trac.openmicroscopy to the ignore list' 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO Repository: ome/bio-formats-examples 2024-06-09 00:03:43,555 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO Merged PRs: 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 127 jburel 'Matlab Examples' 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause' 2024-06-09 00:03:43,555 [ scc.merge] INFO 2024-06-09 00:03:43,555 [ scc.merge] INFO Repository: openmicroscopy/bioformats 2024-06-09 00:03:43,555 [ scc.merge] INFO Excluded PRs: 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp) 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft) 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles' (label: exclude) 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 4180 melissalinkert 'Columbus: update to use micrometers instead of `reference frame` for positions' (label: exclude) 2024-06-09 00:03:43,555 [ scc.merge] INFO - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking) 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude) 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Merged PRs: 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)' 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4188 melissalinkert 'Fix a few string comparisons, fixes #4184' 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 4193 dgault 'Imaris: Remove empty color entries for non 0 indexed colors' 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Repository: ome/ome-codecs 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Merged PRs: 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]' 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Repository: ome/ome-common-java 2024-06-09 00:03:43,556 [ scc.merge] INFO Excluded PRs: 2024-06-09 00:03:43,556 [ scc.merge] INFO - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru) 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Repository: ome/ome-jai 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Repository: ome/ome-mdbtools 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,556 [ scc.merge] INFO Repository: ome/ome-metakit 2024-06-09 00:03:43,556 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,556 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO Repository: ome/ome-model 2024-06-09 00:03:43,557 [ scc.merge] INFO Excluded PRs: 2024-06-09 00:03:43,557 [ scc.merge] INFO - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft) 2024-06-09 00:03:43,557 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO Conflicting PRs (not included): 2024-06-09 00:03:43,557 [ scc.merge] INFO - PR 174 jburel 'Remove docs' 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO Repository: ome/ome-poi 2024-06-09 00:03:43,557 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO Repository: ome/ome-stubs 2024-06-09 00:03:43,557 [ scc.merge] INFO Already up to date. 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:03:43,557 [ scc.merge] INFO 2024-06-09 00:04:09,099 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/bio-formats-build/tree/merge_ci + echo 'Update maven component versions' Update maven component versions + update-versions OMEZarrReader=0.5.2-SNAPSHOT bio-formats-documentation=8.0.0-SNAPSHOT bio-formats-examples=8.0.0-SNAPSHOT bio-formats_plugins=8.0.0-SNAPSHOT bio-formats-tools=8.0.0-SNAPSHOT bioformats_package=8.0.0-SNAPSHOT turbojpeg=8.0.0-SNAPSHOT formats-api=8.0.0-SNAPSHOT formats-bsd=8.0.0-SNAPSHOT formats-gpl=8.0.0-SNAPSHOT test-suite=8.0.0-SNAPSHOT pom-bio-formats=8.0.0-SNAPSHOT bioformats=8.0.0-SNAPSHOT ome-codecs=1.0.4-SNAPSHOT ome-common=6.0.23-SNAPSHOT ome-jai=0.1.5-SNAPSHOT ome-mdbtools=5.3.4-SNAPSHOT metakit=5.3.8-SNAPSHOT ome-model-doc=6.3.7-SNAPSHOT ome-xml=6.3.7-SNAPSHOT specification=6.3.7-SNAPSHOT ome-model=6.3.7-SNAPSHOT ome-poi=5.3.10-SNAPSHOT mipav-stubs=6.0.3-SNAPSHOT ome-stubs=6.0.3-SNAPSHOT + echo 'Commit all component version changes' Commit all component version changes + git submodule foreach 'git add -u' Entering 'ZarrReader' Entering 'bio-formats-documentation' Entering 'bio-formats-examples' Entering 'bioformats' Entering 'ome-codecs' Entering 'ome-common-java' Entering 'ome-jai' Entering 'ome-mdbtools' Entering 'ome-metakit' Entering 'ome-model' Entering 'ome-poi' Entering 'ome-stubs' + git submodule foreach 'git commit -m '\''Update component versions'\'' || true' Entering 'ZarrReader' HEAD detached from 31e9353 nothing to commit, working tree clean Entering 'bio-formats-documentation' [detached HEAD 8ab65005] Update component versions 1 file changed, 7 insertions(+), 7 deletions(-) Entering 'bio-formats-examples' [detached HEAD 38691dc] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'bioformats' [detached HEAD 1c3f490517] Update component versions 1 file changed, 9 insertions(+), 9 deletions(-) Entering 'ome-codecs' [detached HEAD 935798b] Update component versions 1 file changed, 2 insertions(+), 2 deletions(-) Entering 'ome-common-java' HEAD detached from 4604fff nothing to commit, working tree clean Entering 'ome-jai' HEAD detached from e70c2ab nothing to commit, working tree clean Entering 'ome-mdbtools' HEAD detached from 9193930 nothing to commit, working tree clean Entering 'ome-metakit' [detached HEAD 28938c6] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-model' [detached HEAD bedd6629] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-poi' [detached HEAD 60616fe] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-stubs' HEAD detached from 1559997 nothing to commit, working tree clean + echo 'Push all branches' Push all branches ++ git config github.user + user=snoopycrimecop + git submodule foreach 'git push -f git@github.com:snoopycrimecop/${path}.git HEAD:merge_ci' Entering 'ZarrReader' Everything up-to-date Entering 'bio-formats-documentation' To github.com:snoopycrimecop/bio-formats-documentation.git 5d12ddc9..8ab65005 HEAD -> merge_ci Entering 'bio-formats-examples' To github.com:snoopycrimecop/bio-formats-examples.git 2e4b8a7..38691dc HEAD -> merge_ci Entering 'bioformats' To github.com:snoopycrimecop/bioformats.git 0198764929..1c3f490517 HEAD -> merge_ci Entering 'ome-codecs' To github.com:snoopycrimecop/ome-codecs.git f3fca14..935798b HEAD -> merge_ci Entering 'ome-common-java' Everything up-to-date Entering 'ome-jai' Everything up-to-date Entering 'ome-mdbtools' Everything up-to-date Entering 'ome-metakit' To github.com:snoopycrimecop/ome-metakit.git 24ed1a0..28938c6 HEAD -> merge_ci Entering 'ome-model' To github.com:snoopycrimecop/ome-model.git 7f3d277b..bedd6629 HEAD -> merge_ci Entering 'ome-poi' To github.com:snoopycrimecop/ome-poi.git 5054d5d..60616fe HEAD -> merge_ci Entering 'ome-stubs' Everything up-to-date + echo 'Commit all component version changes' Commit all component version changes + git add -u + git commit -m 'Update component versions' [detached HEAD ac87346] Update component versions 7 files changed, 7 insertions(+), 7 deletions(-) + git push -f git@github.com:snoopycrimecop/bio-formats-build.git HEAD:merge_ci To github.com:snoopycrimecop/bio-formats-build.git 5f4a421..ac87346 HEAD -> merge_ci [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins14178441352605012366.sh + mkdir -p /home/omero/workspace/BIOFORMATS-push/target + cd /home/omero/workspace/BIOFORMATS-push/target + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + cd /home/omero/workspace/BIOFORMATS-push/bio-formats-build + foreach-get-version + foreach-get-version-as-property Archiving artifacts Finished: SUCCESS