Started by upstream project "BIOFORMATS-test-repo" build number 68
originally caused by:
Started by upstream project "Trigger" build number 76
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17069707427351420254.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10156_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:40,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:40,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:21:40,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:40,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:40,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:40,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:40,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:40,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:40,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:40,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:40,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:40,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:40,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:40,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:40,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:40,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:40,950 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:40,950 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:40,950 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:40,951 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:40,951 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:21:40,952 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:21:40,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-19 01:21:40,965] [main] java.version = 17.0.2
[testng] 01:21:40,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:40,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:41,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-19_01-21-40.log]
[testng] 01:21:41,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-19 01:21:41,032] [main] testng.directory = /data
[testng] [2024-05-19 01:21:41,032] [main] testng.configDirectory = /config
[testng] [2024-05-19 01:21:41,044] [main] testng.multiplier = 1.0
[testng] [2024-05-19 01:21:41,045] [main] testng.in-memory = false
[testng] [2024-05-19 01:21:41,046] [main] testng.allow-missing = false
[testng] [2024-05-19 01:21:41,046] [main] user.language = en
[testng] [2024-05-19 01:21:41,046] [main] user.country = ${user.country}
[testng] [2024-05-19 01:21:41,046] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-19 01:21:41,597] [main] ----------------------------------------
[testng] [2024-05-19 01:21:41,597] [main] Total files: 21
[testng] [2024-05-19 01:21:41,597] [main] Scan time: 0.551 s (26 ms/file)
[testng] [2024-05-19 01:21:41,598] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-19 01:21:42,992] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim:
[testng] 01:21:42,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:42,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:42,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-19_01-21-42.log]
[testng] 01:21:42,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae40cf1 - End of configuration.
[testng] [2024-05-19 01:21:43,073] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim:
[testng] 01:21:43,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:43,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-19_01-21-43.log]
[testng] 01:21:43,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed89ca2 - End of configuration.
[testng] [2024-05-19 01:21:43,097] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim:
[testng] 01:21:43,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:43,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-19_01-21-43.log]
[testng] 01:21:43,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dedd677 - End of configuration.
[testng] [2024-05-19 01:21:43,123] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim:
[testng] 01:21:43,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:43,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-19_01-21-43.log]
[testng] 01:21:43,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b89bd71 - End of configuration.
[testng] [2024-05-19 01:21:43,150] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim:
[testng] 01:21:43,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:43,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-19_01-21-43.log]
[testng] 01:21:43,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23486705 - End of configuration.
[testng] [2024-05-19 01:21:43,174] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim:
[testng] 01:21:43,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:43,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-19_01-21-43.log]
[testng] 01:21:43,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3605f2e0 - End of configuration.
[testng] [2024-05-19 01:21:43,228] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim:
[testng] 01:21:43,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:43,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-19_01-21-43.log]
[testng] 01:21:43,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3d91f - End of configuration.
[testng] [2024-05-19 01:21:43,253] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim:
[testng] 01:21:43,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:43,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-19_01-21-43.log]
[testng] 01:21:43,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cff2c - End of configuration.
[testng] [2024-05-19 01:21:43,278] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim:
[testng] 01:21:43,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:43,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-19_01-21-43.log]
[testng] 01:21:43,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b11b4a5 - End of configuration.
[testng] [2024-05-19 01:21:43,311] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim:
[testng] 01:21:43,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:43,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-19_01-21-43.log]
[testng] 01:21:43,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration.
[testng] [2024-05-19 01:21:43,327] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim:
[testng] 01:21:43,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:43,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-19_01-21-43.log]
[testng] 01:21:43,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a89e1c - End of configuration.
[testng] [2024-05-19 01:21:43,345] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim:
[testng] 01:21:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:43,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-19_01-21-43.log]
[testng] 01:21:43,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc10b8 - End of configuration.
[testng] [2024-05-19 01:21:46,152] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim:
[testng] [2024-05-19 01:21:46,178] [pool-1-thread-4] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-05-19 01:21:46,195] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-05-19 01:21:46,214] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim:
[testng] [2024-05-19 01:21:46,236] [pool-1-thread-6] Initializing /data/venu/Kontrolle0009.lim:
[testng] [2024-05-19 01:21:46,251] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-05-19 01:21:46,264] [pool-1-thread-8] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-05-19 01:21:46,279] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS