Started by upstream project "BIOFORMATS-test-repo" build number 1
originally caused by:
Started by upstream project "Trigger" build number 1
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8281083254053461657.sh
+ '[' misc = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_102_merge_ci -v /uod/idr/repos/curated/misc:/data -v /uod/idr-scratch/devspace/curated/misc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 16:57:24,181 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 16:57:24,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 16:57:24,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:57:24,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 16:57:24,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 16:57:24,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 16:57:24,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 16:57:24,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:57:24,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 16:57:24,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 16:57:24,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 16:57:24,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 16:57:24,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 16:57:24,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 16:57:24,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 16:57:24,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 16:57:24,371 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 16:57:24,371 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 16:57:24,371 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 16:57:24,371 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 16:57:24,371 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 16:57:24,372 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 16:57:24,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-14 16:57:24,381] [main] java.version = 21
[testng] 16:57:24,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 16:57:24,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:57:24,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_16-57-24.log]
[testng] 16:57:24,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-14 16:57:24,427] [main] testng.directory = /data
[testng] [2024-03-14 16:57:24,427] [main] testng.configDirectory = /config
[testng] [2024-03-14 16:57:24,436] [main] testng.multiplier = 1.0
[testng] [2024-03-14 16:57:24,436] [main] testng.in-memory = false
[testng] [2024-03-14 16:57:24,436] [main] testng.allow-missing = false
[testng] [2024-03-14 16:57:24,437] [main] user.language = en
[testng] [2024-03-14 16:57:24,437] [main] user.country = ${user.country}
[testng] [2024-03-14 16:57:24,437] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-14 16:57:43,984] [main] ----------------------------------------
[testng] [2024-03-14 16:57:43,984] [main] Total files: 30
[testng] [2024-03-14 16:57:43,984] [main] Scan time: 19.547 s (651 ms/file)
[testng] [2024-03-14 16:57:43,985] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 10 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-14 16:58:06,705] [pool-1-thread-1] Initializing /data/curtis/bill.jpg:
[testng] 16:58:06,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 16:58:06,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:06,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_16-58-06.log]
[testng] 16:58:06,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c9053f - End of configuration.
[testng] [2024-03-14 16:58:06,784] [pool-1-thread-10] Initializing /data/curtis/bill.gif:
[testng] 16:58:06,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 16:58:06,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:06,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_16-58-06.log]
[testng] 16:58:06,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c83175 - End of configuration.
[testng] [2024-03-14 16:58:06,862] [pool-1-thread-9] Initializing /data/curtis/images.tiff:
[testng] 16:58:06,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 16:58:06,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:06,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_16-58-06.log]
[testng] 16:58:06,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f38e7a0 - End of configuration.
[testng] [2024-03-14 16:58:07,729] [pool-1-thread-8] Initializing /data/curtis/rosat.pic:
[testng] 16:58:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 16:58:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:07,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_16-58-07.log]
[testng] 16:58:07,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509d8d7d - End of configuration.
[testng] [2024-03-14 16:58:08,096] [pool-1-thread-7] Initializing /data/curtis/penguin.jpg:
[testng] 16:58:08,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 16:58:08,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:08,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_16-58-08.log]
[testng] 16:58:08,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174bfad0 - End of configuration.
[testng] [2024-03-14 16:58:08,185] [pool-1-thread-6] Initializing /data/curtis/cloud.tiff:
[testng] 16:58:08,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 16:58:08,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:08,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_16-58-08.log]
[testng] 16:58:08,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7bd930 - End of configuration.
[testng] [2024-03-14 16:58:09,080] [pool-1-thread-5] Initializing /data/curtis/johan.gif:
[testng] 16:58:09,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 16:58:09,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:09,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_16-58-09.log]
[testng] 16:58:09,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fbe0d6 - End of configuration.
[testng] [2024-03-14 16:58:09,168] [pool-1-thread-4] Initializing /data/curtis/ssecsm.gif:
[testng] 16:58:09,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 16:58:09,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:09,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_16-58-09.log]
[testng] 16:58:09,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d12d788 - End of configuration.
[testng] [2024-03-14 16:58:09,240] [pool-1-thread-3] Initializing /data/curtis/penguin.tiff:
[testng] 16:58:09,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 16:58:09,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:09,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_16-58-09.log]
[testng] 16:58:09,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24e651fd - End of configuration.
[testng] [2024-03-14 16:58:10,137] [pool-1-thread-2] Initializing /data/curtis/m51.tif:
[testng] 16:58:10,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 16:58:10,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:58:10,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_16-58-10.log]
[testng] 16:58:10,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@468ae59a - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 530, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 54 seconds
Finished: SUCCESS