Started by upstream project "BIOFORMATS-test-repo" build number 7
originally caused by:
 Started by upstream project "Trigger" build number 10
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13886351002823385855.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1028_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 00:55:37,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:55:37,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 00:55:37,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:55:37,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:55:37,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:55:37,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:55:37,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:55:37,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:55:37,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:55:37,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:55:37,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:55:37,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:55:37,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:55:37,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:55:37,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:55:37,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:55:37,754 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:55:37,755 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:55:37,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:55:37,755 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:55:37,755 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 00:55:37,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 00:55:37,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-21 00:55:37,766] [main] java.version = 21
   [testng] 00:55:37,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:55:37,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:37,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_00-55-37.log]
   [testng] 00:55:37,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-03-21 00:55:37,814] [main] testng.directory = /data
   [testng] [2024-03-21 00:55:37,815] [main] testng.configDirectory = /config
   [testng] [2024-03-21 00:55:37,824] [main] testng.multiplier = 1.0
   [testng] [2024-03-21 00:55:37,824] [main] testng.in-memory = false
   [testng] [2024-03-21 00:55:37,825] [main] testng.allow-missing = false
   [testng] [2024-03-21 00:55:37,825] [main] user.language = en
   [testng] [2024-03-21 00:55:37,825] [main] user.country = ${user.country}
   [testng] [2024-03-21 00:55:37,825] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-21 00:55:40,078] [main] ----------------------------------------
   [testng] [2024-03-21 00:55:40,079] [main] Total files: 46
   [testng] [2024-03-21 00:55:40,079] [main] Scan time: 2.253 s (48 ms/file)
   [testng] [2024-03-21 00:55:40,079] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-21 00:55:59,670] [pool-1-thread-1] Initializing /data/christian/080807epi/080807epi2.vws: 
   [testng] 00:55:59,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:55:59,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:59,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_00-55-59.log]
   [testng] 00:55:59,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c58b6f - End of configuration.
   [testng] [2024-03-21 00:55:59,765] [pool-1-thread-12] Initializing /data/samples/fibre.vws: 
   [testng] 00:55:59,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:55:59,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:59,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_00-55-59.log]
   [testng] 00:55:59,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92bcccf - End of configuration.
   [testng] [2024-03-21 00:55:59,869] [pool-1-thread-11] Initializing /data/andreas/090812E4.vws: 
   [testng] 00:55:59,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:55:59,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:55:59,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_00-55-59.log]
   [testng] 00:55:59,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bfbaa8 - End of configuration.
   [testng] [2024-03-21 00:56:00,951] [pool-1-thread-10] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws: 
   [testng] 00:56:00,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:56:00,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:00,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_00-56-00.log]
   [testng] 00:56:00,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b378a33 - End of configuration.
   [testng] [2024-03-21 00:56:02,474] [pool-1-thread-9] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif: 
   [testng] 00:56:02,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:56:02,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:02,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_00-56-02.log]
   [testng] 00:56:02,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c80e05f - End of configuration.
   [testng] [2024-03-21 00:56:02,578] [pool-1-thread-8] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws: 
   [testng] 00:56:02,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:56:02,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:02,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_00-56-02.log]
   [testng] 00:56:02,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0bebe0 - End of configuration.
   [testng] [2024-03-21 00:56:02,704] [pool-1-thread-7] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws: 
   [testng] 00:56:02,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:56:02,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:02,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_00-56-02.log]
   [testng] 00:56:02,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fa4e92b - End of configuration.
   [testng] [2024-03-21 00:56:02,927] [pool-1-thread-6] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif: 
   [testng] 00:56:02,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:56:02,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:02,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_00-56-02.log]
   [testng] 00:56:02,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49b5f0d6 - End of configuration.
   [testng] [2024-03-21 00:56:03,073] [pool-1-thread-5] Initializing /data/stephan/two sequences.vws: 
   [testng] 00:56:03,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:56:03,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:03,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_00-56-03.log]
   [testng] 00:56:03,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53fe7d6 - End of configuration.
   [testng] [2024-03-21 00:56:03,161] [pool-1-thread-4] Initializing /data/imagesc-84715/working.vws: 
   [testng] 00:56:03,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:56:03,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:03,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_00-56-03.log]
   [testng] 00:56:03,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191d818a - End of configuration.
   [testng] [2024-03-21 00:56:03,627] [pool-1-thread-3] Initializing /data/andreas/090811E1.vws: 
   [testng] 00:56:03,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:56:03,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:03,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_00-56-03.log]
   [testng] 00:56:03,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320a030b - End of configuration.
   [testng] [2024-03-21 00:56:06,281] [pool-1-thread-2] Initializing /data/ian/working_tillvision_vws/20120322.vws: 
   [testng] 00:56:06,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:56:06,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:56:06,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_00-56-06.log]
   [testng] 00:56:06,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d9d9c21 - End of configuration.
   [testng] [2024-03-21 00:56:12,899] [pool-1-thread-12] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws: 
   [testng] [2024-03-21 00:56:13,218] [pool-1-thread-6] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif: 
   [testng] [2024-03-21 00:56:13,717] [pool-1-thread-9] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif: 
   [testng] [2024-03-21 00:56:16,039] [pool-1-thread-6] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws: 
   [testng] [2024-03-21 00:56:16,340] [pool-1-thread-9] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws: 
   [testng] [2024-03-21 00:56:17,057] [pool-1-thread-1] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws: 
   [testng] [2024-03-21 00:56:18,673] [pool-1-thread-8] Initializing /data/venu/060310/drug addition _BAM.vws: 
   [testng] [2024-03-21 00:56:19,921] [pool-1-thread-12] Initializing /data/imagesc-84715/not working.vws: 
   [testng] [2024-03-21 00:56:21,246] [pool-1-thread-5] Initializing /data/ian/non_working_tillvision_vws/20120404.vws: 
   [testng] [2024-03-21 00:56:25,203] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws: 
   [testng] [2024-03-21 00:56:27,056] [pool-1-thread-6] Initializing /data/gerhard/test.vws: 
   [testng] [2024-03-21 00:56:27,715] [pool-1-thread-4] Initializing /data/christian/080807ionophore/080807ionophore3.vws: 
   [testng] [2024-03-21 00:56:28,451] [pool-1-thread-8] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws: 
Build step 'Execute shell' marked build as failure
Finished: FAILURE