Started by upstream project "BIOFORMATS-test-repo" build number 69
originally caused by:
Started by upstream project "Trigger" build number 77
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4670024750727708779.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10316_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:59,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:59,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:21:59,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:59,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:59,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:59,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:59,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:59,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:59,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:59,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:59,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:59,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:59,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:59,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:59,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:59,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:59,562 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:59,562 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:59,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:59,563 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:59,563 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:21:59,564 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:21:59,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 356 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-20 01:21:59,574] [main] java.version = 1.8.0_342
[testng] 01:21:59,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:59,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:59,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-20_01-21-59.log]
[testng] 01:21:59,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-20 01:21:59,632] [main] testng.directory = /data
[testng] [2024-05-20 01:21:59,633] [main] testng.configDirectory = /config
[testng] [2024-05-20 01:21:59,646] [main] testng.multiplier = 1.0
[testng] [2024-05-20 01:21:59,646] [main] testng.in-memory = false
[testng] [2024-05-20 01:21:59,646] [main] testng.allow-missing = false
[testng] [2024-05-20 01:21:59,647] [main] user.language = fr
[testng] [2024-05-20 01:21:59,647] [main] user.country = FR
[testng] [2024-05-20 01:21:59,647] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-20 01:22:20,495] [main] ----------------------------------------
[testng] [2024-05-20 01:22:20,496] [main] Total files: 283
[testng] [2024-05-20 01:22:20,496] [main] Scan time: 20.848 s (73 ms/file)
[testng] [2024-05-20 01:22:20,496] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-20 01:32:17,814] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:32:17,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:32:17,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:17,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-20_01-32-17.log]
[testng] 01:32:17,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfd91db - End of configuration.
[testng] [2024-05-20 01:32:17,845] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] 01:32:17,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:32:17,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:17,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-20_01-32-17.log]
[testng] 01:32:17,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f54d60c - End of configuration.
[testng] [2024-05-20 01:32:17,967] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:32:17,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:32:17,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:17,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-20_01-32-17.log]
[testng] 01:32:17,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20823a3f - End of configuration.
[testng] [2024-05-20 01:32:18,057] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] 01:32:18,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:32:18,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-20_01-32-18.log]
[testng] 01:32:18,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf14ee6 - End of configuration.
[testng] [2024-05-20 01:32:18,212] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] 01:32:18,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:32:18,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-20_01-32-18.log]
[testng] 01:32:18,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27411294 - End of configuration.
[testng] [2024-05-20 01:32:18,333] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 01:32:18,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:32:18,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-20_01-32-18.log]
[testng] 01:32:18,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8a9875 - End of configuration.
[testng] [2024-05-20 01:32:18,625] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] 01:32:18,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:32:18,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-20_01-32-18.log]
[testng] 01:32:18,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c42d5d - End of configuration.
[testng] [2024-05-20 01:32:18,982] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 01:32:18,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:32:18,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-20_01-32-18.log]
[testng] 01:32:18,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378b0204 - End of configuration.
[testng] [2024-05-20 01:32:19,286] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] 01:32:19,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:32:19,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:19,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-20_01-32-19.log]
[testng] 01:32:19,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2153ffe9 - End of configuration.
[testng] [2024-05-20 01:32:19,804] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 01:32:19,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:32:19,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:19,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-20_01-32-19.log]
[testng] 01:32:19,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77d5f0b9 - End of configuration.
[testng] [2024-05-20 01:32:19,846] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 01:32:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:32:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:19,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-20_01-32-19.log]
[testng] 01:32:19,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1467ac13 - End of configuration.
[testng] [2024-05-20 01:32:19,893] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] 01:32:19,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:32:19,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:19,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-20_01-32-19.log]
[testng] 01:32:19,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f1ec3a - End of configuration.
[testng] [2024-05-20 01:32:22,770] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-05-20 01:32:22,827] [pool-1-thread-10] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-05-20 01:32:22,948] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-05-20 01:32:23,074] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-05-20 01:32:23,646] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-05-20 01:32:23,765] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-05-20 01:32:24,703] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir:
[testng] [2024-05-20 01:32:25,031] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-05-20 01:32:25,124] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-05-20 01:32:25,744] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-05-20 01:32:27,657] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-05-20 01:32:28,259] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-05-20 01:32:28,308] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-05-20 01:32:28,367] [pool-1-thread-1] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-05-20 01:32:28,603] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-05-20 01:32:28,651] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-05-20 01:32:28,768] [pool-1-thread-6] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-05-20 01:32:29,062] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-05-20 01:32:29,530] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-05-20 01:32:30,320] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-05-20 01:32:30,417] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-05-20 01:32:33,198] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-05-20 01:32:34,113] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-05-20 01:32:34,459] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-05-20 01:32:34,691] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-05-20 01:32:34,867] [pool-1-thread-1] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-05-20 01:32:37,240] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-05-20 01:32:37,706] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-05-20 01:32:41,674] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-05-20 01:32:43,003] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-05-20 01:32:43,122] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-05-20 01:32:43,270] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-05-20 01:32:53,915] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-05-20 01:32:54,611] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-05-20 01:32:54,955] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-05-20 01:32:55,586] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-05-20 01:32:55,691] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-05-20 01:32:55,944] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-05-20 01:32:58,207] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-05-20 01:32:58,774] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-05-20 01:32:58,839] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-05-20 01:32:58,993] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-05-20 01:32:59,223] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-05-20 01:33:00,958] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-05-20 01:33:08,445] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-05-20 01:33:09,176] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-05-20 01:33:09,239] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-05-20 01:33:11,151] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-05-20 01:33:14,305] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-05-20 01:33:14,672] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-05-20 01:33:15,231] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-05-20 01:33:16,668] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-05-20 01:33:16,925] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-05-20 01:33:17,400] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-05-20 01:33:18,490] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-05-20 01:33:18,695] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-05-20 01:33:22,695] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-05-20 01:33:22,927] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-05-20 01:33:23,888] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-05-20 01:33:24,704] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-05-20 01:33:24,928] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-05-20 01:33:25,997] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-05-20 01:33:26,489] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-05-20 01:33:29,586] [pool-1-thread-11] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-05-20 01:33:29,885] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-05-20 01:33:30,856] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-05-20 01:33:31,501] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-05-20 01:33:31,885] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-05-20 01:33:32,063] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-05-20 01:33:32,215] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-05-20 01:33:32,953] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-05-20 01:33:33,623] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-05-20 01:36:25,564] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-05-20 01:36:25,759] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-05-20 01:36:26,440] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-05-20 01:36:26,998] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-05-20 01:36:27,612] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-05-20 01:36:27,895] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-05-20 01:36:28,291] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-05-20 01:36:28,410] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-05-20 01:36:28,831] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-05-20 01:36:30,128] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-05-20 01:36:31,337] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-05-20 01:36:40,632] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-05-20 01:36:41,871] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-05-20 01:36:43,075] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-05-20 01:36:49,994] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-05-20 01:36:50,847] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-05-20 01:36:51,751] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-05-20 01:36:52,149] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-05-20 01:36:59,379] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-05-20 01:37:00,121] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-05-20 01:37:04,261] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-05-20 01:37:05,215] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-05-20 01:37:08,013] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-05-20 01:37:08,226] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-05-20 01:37:09,338] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-05-20 01:37:09,529] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-05-20 01:37:10,138] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-05-20 01:37:10,581] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-05-20 01:37:55,693] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-05-20 01:37:56,115] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-05-20 01:37:58,817] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-05-20 01:37:59,201] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-05-20 01:38:00,620] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-05-20 01:38:10,249] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-05-20 01:38:11,313] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-05-20 01:38:12,036] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-05-20 01:38:13,455] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-05-20 01:38:13,864] [pool-1-thread-1] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-05-20 01:38:14,740] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-05-20 01:38:34,506] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-05-20 01:39:24,782] [pool-1-thread-12] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-05-20 01:39:24,854] [pool-1-thread-11] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-05-20 01:39:25,528] [pool-1-thread-10] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-05-20 01:40:16,833] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-05-20 01:40:16,983] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-05-20 01:40:17,769] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-05-20 01:40:18,331] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-05-20 01:40:18,645] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-05-20 01:40:18,775] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-05-20 01:40:19,872] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-05-20 01:40:20,185] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-05-20 01:40:20,753] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-05-20 01:40:21,179] [pool-1-thread-1] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-05-20 01:40:22,683] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-05-20 01:40:22,884] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-05-20 01:40:23,432] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-05-20 01:40:29,689] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-05-20 01:40:30,291] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-05-20 01:40:31,409] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-05-20 01:40:31,656] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-05-20 01:40:33,410] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-05-20 01:40:38,154] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-05-20 01:40:39,361] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-05-20 01:40:44,003] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-05-20 01:40:44,495] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-05-20 01:40:45,094] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-05-20 01:40:45,595] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-05-20 01:40:45,835] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-05-20 01:40:46,910] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-05-20 01:40:48,215] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-05-20 01:40:49,322] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-05-20 01:40:52,924] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-05-20 01:40:54,220] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-05-20 01:40:55,468] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-05-20 01:40:55,959] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-05-20 01:40:56,930] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-05-20 01:40:57,460] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-05-20 01:40:58,517] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-05-20 01:41:05,480] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-05-20 01:41:05,708] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-05-20 01:41:06,564] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir:
[testng] [2024-05-20 01:41:21,351] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-05-20 01:41:21,435] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-05-20 01:41:21,613] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-05-20 01:41:21,788] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-05-20 01:41:22,702] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-05-20 01:41:23,552] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-05-20 01:41:23,890] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-05-20 01:41:24,527] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-05-20 01:41:28,044] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-05-20 01:41:28,429] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-05-20 01:41:28,552] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-05-20 01:41:30,003] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-05-20 01:41:30,071] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-05-20 01:41:33,117] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-05-20 01:41:34,036] [pool-1-thread-12] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-05-20 01:43:02,546] [pool-1-thread-6] Initializing /data/qa-17335/1.oir:
[testng] [2024-05-20 01:43:03,438] [pool-1-thread-6] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-05-20 01:43:04,811] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-05-20 01:43:06,104] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-05-20 01:43:07,088] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-05-20 01:43:18,233] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 02:36:15,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:36:15,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:15,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-20_02-36-15.log]
[testng] 02:36:15,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 74 minutes 21 seconds
Finished: SUCCESS