Started by upstream project "<a href='/jenkins/job/BIOFORMATS-test-repo/' class='jenkins-table__link model-link model-link--float'>BIOFORMATS-test-repo</a>" build number <a href='/jenkins/job/BIOFORMATS-test-repo/7' class='jenkins-table__link model-link model-link--float'>7</a>
originally caused by:
 Started by upstream project "<a href='/jenkins/job/Trigger/' class='jenkins-table__link model-link model-link--float'>Trigger</a>" build number <a href='/jenkins/job/Trigger/10' class='jenkins-table__link model-link model-link--float'>10</a>
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on <a href='/jenkins/computer/docker' class='jenkins-table__link model-link model-link--float'>docker</a> (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4521414358419721062.sh
+ '[' aarhus = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1032_merge_ci -v /uod/idr/repos/curated/aarhus:/data -v /uod/idr-scratch/merge-ci/curated/aarhus:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
FATAL: command execution failed
java.nio.channels.ClosedChannelException
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
	at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
	at hudson.remoting.Channel.close(Channel.java:1497)
	at hudson.remoting.Channel.close(Channel.java:1450)
	at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
	at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
	at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
	at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
	at hudson.model.Queue._withLock(Queue.java:1401)
	at hudson.model.Queue.withLock(Queue.java:1275)
	at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
	at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
	at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
	at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
	at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
	at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
	at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
	at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
	at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
	at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
	at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.Server.doStop(Server.java:517)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at winstone.Launcher.shutdown(Launcher.java:442)
	at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: java.io.IOException: Backing channel 'JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364' is disconnected.
	at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:215)
	at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:285)
	at jdk.proxy2/jdk.proxy2.$Proxy141.isAlive(Unknown Source)
	at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1212)
	at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1204)
	at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:195)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:145)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
	at hudson.model.Build$BuildExecution.build(Build.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:164)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
	at hudson.model.Run.execute(Run.java:1895)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
	at hudson.model.ResourceController.execute(ResourceController.java:101)
	at hudson.model.Executor.run(Executor.java:442)
FATAL: Unable to delete script file /tmp/jenkins4521414358419721062.sh
java.nio.channels.ClosedChannelException
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
	at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
	at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
	at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
	at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
	at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
	at hudson.remoting.Channel.close(Channel.java:1497)
	at hudson.remoting.Channel.close(Channel.java:1450)
	at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
	at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
	at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
	at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
	at hudson.model.Queue._withLock(Queue.java:1401)
	at hudson.model.Queue.withLock(Queue.java:1275)
	at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
	at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
	at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
	at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
	at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
	at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
	at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
	at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
	at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
	at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
	at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
	at org.eclipse.jetty.server.Server.doStop(Server.java:517)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
	at winstone.Launcher.shutdown(Launcher.java:442)
	at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: hudson.remoting.ChannelClosedException: Channel "hudson.remoting.Channel@4b3641b6:JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364": Remote call on JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364 failed. The channel is closing down or has closed down
	at hudson.remoting.Channel.call(Channel.java:996)
	at hudson.FilePath.act(FilePath.java:1230)
	at hudson.FilePath.act(FilePath.java:1219)
	at hudson.FilePath.delete(FilePath.java:1766)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:163)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
	at hudson.model.Build$BuildExecution.build(Build.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:164)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
	at hudson.model.Run.execute(Run.java:1895)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
	at hudson.model.ResourceController.execute(ResourceController.java:101)
	at hudson.model.Executor.run(Executor.java:442)
Build step 'Execute shell' marked build as failure
Finished: FAILURE