Started by upstream project "BIOFORMATS-test-repo" build number 69
originally caused by:
Started by upstream project "Trigger" build number 77
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12494070199759047779.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10329_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:24:48,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:48,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:48,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:48,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:48,410 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:48,411 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:48,411 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:48,411 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:48,411 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:24:48,412 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:24:48,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 464 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-20 01:24:48,423] [main] java.version = 1.8.0_342
[testng] 01:24:48,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:48,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:48,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-20_01-24-48.log]
[testng] 01:24:48,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-20 01:24:48,486] [main] testng.directory = /data
[testng] [2024-05-20 01:24:48,486] [main] testng.configDirectory = /config
[testng] [2024-05-20 01:24:48,501] [main] testng.multiplier = 1.0
[testng] [2024-05-20 01:24:48,502] [main] testng.in-memory = false
[testng] [2024-05-20 01:24:48,502] [main] testng.allow-missing = false
[testng] [2024-05-20 01:24:48,502] [main] user.language = fr
[testng] [2024-05-20 01:24:48,502] [main] user.country = FR
[testng] [2024-05-20 01:24:48,502] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-20 01:24:49,580] [main] ----------------------------------------
[testng] [2024-05-20 01:24:49,580] [main] Total files: 15
[testng] [2024-05-20 01:24:49,580] [main] Scan time: 1.078 s (71 ms/file)
[testng] [2024-05-20 01:24:49,580] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-20 01:24:51,055] [pool-1-thread-1] Initializing /data/jeremy/Hiv_spikes.am:
[testng] 01:24:51,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:24:51,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-20_01-24-51.log]
[testng] 01:24:51,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4ea84c - End of configuration.
[testng] [2024-05-20 01:24:51,099] [pool-1-thread-12] Initializing /data/public/imagesc-50585/BF_CheckAmira.am:
[testng] 01:24:51,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:24:51,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-20_01-24-51.log]
[testng] 01:24:51,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339e452d - End of configuration.
[testng] [2024-05-20 01:24:51,119] [pool-1-thread-11] Initializing /data/johannes/template.grey:
[testng] 01:24:51,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:24:51,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-20_01-24-51.log]
[testng] 01:24:51,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28040794 - End of configuration.
[testng] [2024-05-20 01:24:51,203] [pool-1-thread-10] Initializing /data/ilya/test.am:
[testng] 01:24:51,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:24:51,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-20_01-24-51.log]
[testng] 01:24:51,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d367868 - End of configuration.
[testng] [2024-05-20 01:24:51,275] [pool-1-thread-9] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG:
[testng] 01:24:51,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:24:51,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-20_01-24-51.log]
[testng] 01:24:51,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570ce2f8 - End of configuration.
[testng] [2024-05-20 01:24:51,281] [pool-1-thread-8] Initializing /data/public/imagesc-50585/BF_Check.tif:
[testng] 01:24:51,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:24:51,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-20_01-24-51.log]
[testng] 01:24:51,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@418bd941 - End of configuration.
[testng] [2024-05-20 01:24:51,316] [pool-1-thread-7] Initializing /data/public/ignacio/test.am:
[testng] 01:24:51,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:24:51,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-20_01-24-51.log]
[testng] 01:24:51,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b0956d - End of configuration.
[testng] [2024-05-20 01:24:51,333] [pool-1-thread-6] Initializing /data/public/imagesc-50585/BF_CheckMIB.am:
[testng] 01:24:51,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:24:51,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-20_01-24-51.log]
[testng] 01:24:51,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a65c49 - End of configuration.
[testng] [2024-05-20 01:24:51,349] [pool-1-thread-5] Initializing /data/johannes/template.labels:
[testng] 01:24:51,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:24:51,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-20_01-24-51.log]
[testng] 01:24:51,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6212b984 - End of configuration.
[testng] [2024-05-20 01:24:51,372] [pool-1-thread-4] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am:
[testng] 01:24:51,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:24:51,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-20_01-24-51.log]
[testng] 01:24:51,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a657a7f - End of configuration.
[testng] [2024-05-20 01:24:51,527] [pool-1-thread-3] Initializing /data/samples/emptykey/test.am:
[testng] 01:24:51,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:24:51,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-20_01-24-51.log]
[testng] 01:24:51,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2472c989 - End of configuration.
[testng] [2024-05-20 01:24:51,549] [pool-1-thread-2] Initializing /data/jeremy/Virus_Membrane7.am:
[testng] 01:24:51,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:24:51,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:51,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-20_01-24-51.log]
[testng] 01:24:51,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@237bd84e - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS