Started by upstream project "BIOFORMATS-test-repo" build number 69
originally caused by:
Started by upstream project "Trigger" build number 77
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14473548739093327811.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10332_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:25:34,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:34,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:25:34,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:25:34,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:25:34,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:34,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:34,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:25:34,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:34,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:34,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:34,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:34,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:34,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:34,752 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:34,753 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:34,753 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:34,753 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:34,753 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:25:34,754 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:25:34,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6b4a4e18 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 388 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-20 01:25:34,765] [main] java.version = 1.8.0_342
[testng] 01:25:34,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:34,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:34,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-20_01-25-34.log]
[testng] 01:25:34,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-20 01:25:34,821] [main] testng.directory = /data
[testng] [2024-05-20 01:25:34,821] [main] testng.configDirectory = /config
[testng] [2024-05-20 01:25:34,834] [main] testng.multiplier = 1.0
[testng] [2024-05-20 01:25:34,834] [main] testng.in-memory = false
[testng] [2024-05-20 01:25:34,834] [main] testng.allow-missing = false
[testng] [2024-05-20 01:25:34,834] [main] user.language = fr
[testng] [2024-05-20 01:25:34,834] [main] user.country = FR
[testng] [2024-05-20 01:25:34,834] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-20 01:25:49,288] [main] ----------------------------------------
[testng] [2024-05-20 01:25:49,289] [main] Total files: 226
[testng] [2024-05-20 01:25:49,289] [main] Scan time: 14.454 s (63 ms/file)
[testng] [2024-05-20 01:25:49,289] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-20 01:25:59,033] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 01:25:59,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:59,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-20_01-25-59.log]
[testng] 01:25:59,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f3a453d - End of configuration.
[testng] [2024-05-20 01:25:59,107] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] 01:25:59,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:59,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-20_01-25-59.log]
[testng] 01:25:59,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3895890b - End of configuration.
[testng] [2024-05-20 01:25:59,123] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 01:25:59,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:59,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-20_01-25-59.log]
[testng] 01:25:59,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e04d0e5 - End of configuration.
[testng] [2024-05-20 01:25:59,147] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] 01:25:59,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:59,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-20_01-25-59.log]
[testng] 01:25:59,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27bf01fc - End of configuration.
[testng] [2024-05-20 01:25:59,156] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 01:25:59,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:59,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-20_01-25-59.log]
[testng] 01:25:59,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf31640 - End of configuration.
[testng] [2024-05-20 01:25:59,234] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif:
[testng] 01:25:59,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:59,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-20_01-25-59.log]
[testng] 01:25:59,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ed18e0 - End of configuration.
[testng] [2024-05-20 01:25:59,332] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:25:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-20_01-25-59.log]
[testng] 01:25:59,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16fe7c58 - End of configuration.
[testng] [2024-05-20 01:25:59,366] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:25:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-20_01-25-59.log]
[testng] 01:25:59,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1196365c - End of configuration.
[testng] [2024-05-20 01:25:59,381] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:25:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-20_01-25-59.log]
[testng] 01:25:59,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cec00a3 - End of configuration.
[testng] [2024-05-20 01:25:59,514] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 01:25:59,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:59,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-20_01-25-59.log]
[testng] 01:25:59,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a96feed - End of configuration.
[testng] [2024-05-20 01:25:59,522] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 01:25:59,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:59,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-20_01-25-59.log]
[testng] 01:25:59,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77abb4d - End of configuration.
[testng] [2024-05-20 01:25:59,532] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 01:25:59,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:59,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:59,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-20_01-25-59.log]
[testng] 01:25:59,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b02a6a - End of configuration.
[testng] [2024-05-20 01:26:01,506] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-05-20 01:26:01,538] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-05-20 01:26:01,596] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-05-20 01:26:01,613] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-05-20 01:26:01,622] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-05-20 01:26:01,656] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-05-20 01:26:01,737] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-05-20 01:26:01,744] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-05-20 01:26:01,750] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-05-20 01:26:01,761] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-05-20 01:26:01,767] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-05-20 01:26:02,137] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-05-20 01:26:02,165] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-05-20 01:26:02,203] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-05-20 01:26:02,297] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-05-20 01:26:02,415] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 35 seconds
Finished: SUCCESS