Started by upstream project "BIOFORMATS-test-repo" build number 73
originally caused by:
Started by upstream project "Trigger" build number 81
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4962272493601551221.sh
+ '[' visitech = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10978_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:22:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:15,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:15,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:15,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:15,307 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:15,308 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:15,308 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:15,309 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:15,309 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:22:15,310 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:22:15,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 456 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-24 01:22:15,326] [main] java.version = 1.8.0_342
[testng] 01:22:15,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:15,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:15,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-22-15.log]
[testng] 01:22:15,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-24 01:22:15,419] [main] testng.directory = /data
[testng] [2024-05-24 01:22:15,419] [main] testng.configDirectory = /config
[testng] [2024-05-24 01:22:15,433] [main] testng.multiplier = 1.0
[testng] [2024-05-24 01:22:15,433] [main] testng.in-memory = false
[testng] [2024-05-24 01:22:15,434] [main] testng.allow-missing = false
[testng] [2024-05-24 01:22:15,434] [main] user.language = en
[testng] [2024-05-24 01:22:15,434] [main] user.country = ${user.country}
[testng] [2024-05-24 01:22:15,434] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-24 01:22:16,841] [main] ----------------------------------------
[testng] [2024-05-24 01:22:16,841] [main] Total files: 45
[testng] [2024-05-24 01:22:16,841] [main] Scan time: 1.407 s (31 ms/file)
[testng] [2024-05-24 01:22:16,841] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-24 01:22:23,196] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/525.tif:
[testng] 01:22:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-22-23.log]
[testng] 01:22:23,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2a3889 - End of configuration.
[testng] [2024-05-24 01:22:23,258] [pool-1-thread-12] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html:
[testng] 01:22:23,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:23,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-22-23.log]
[testng] 01:22:23,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7206fd - End of configuration.
[testng] [2024-05-24 01:22:23,301] [pool-1-thread-11] Initializing /data/brian/060916-01-561.tif:
[testng] 01:22:23,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:23,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-22-23.log]
[testng] 01:22:23,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283fe409 - End of configuration.
[testng] [2024-05-24 01:22:23,390] [pool-1-thread-10] Initializing /data/oliver/20x/488 Report.html:
[testng] 01:22:23,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:23,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-22-23.log]
[testng] 01:22:23,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f600fde - End of configuration.
[testng] [2024-05-24 01:22:23,504] [pool-1-thread-9] Initializing /data/brian/ScreenShot.jpg:
[testng] 01:22:23,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:23,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-22-23.log]
[testng] 01:22:23,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6645442f - End of configuration.
[testng] [2024-05-24 01:22:23,576] [pool-1-thread-8] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html:
[testng] 01:22:23,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:23,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-22-23.log]
[testng] 01:22:23,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c562aa0 - End of configuration.
[testng] [2024-05-24 01:22:23,602] [pool-1-thread-7] Initializing /data/brian/070613reA1_2 Report.html:
[testng] 01:22:23,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:23,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-22-23.log]
[testng] 01:22:23,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@247b341e - End of configuration.
[testng] [2024-05-24 01:22:23,616] [pool-1-thread-6] Initializing /data/brian/060916-01-488.tif:
[testng] 01:22:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-22-23.log]
[testng] 01:22:23,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132e7699 - End of configuration.
[testng] [2024-05-24 01:22:23,730] [pool-1-thread-5] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html:
[testng] 01:22:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-22-23.log]
[testng] 01:22:23,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b134b39 - End of configuration.
[testng] [2024-05-24 01:22:23,755] [pool-1-thread-4] Initializing /data/oliver/20x/491 Report.html:
[testng] 01:22:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-22-23.log]
[testng] 01:22:23,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20afe920 - End of configuration.
[testng] [2024-05-24 01:22:23,877] [pool-1-thread-3] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html:
[testng] 01:22:23,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:23,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-22-23.log]
[testng] 01:22:23,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fed3889 - End of configuration.
[testng] [2024-05-24 01:22:23,988] [pool-1-thread-2] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html:
[testng] 01:22:23,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:23,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-22-23.log]
[testng] 01:22:23,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78237ee9 - End of configuration.
[testng] [2024-05-24 01:22:25,732] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/597.tif:
[testng] [2024-05-24 01:22:25,788] [pool-1-thread-1] Initializing /data/brian/060916-01 Report.html:
[testng] [2024-05-24 01:22:26,228] [pool-1-thread-9] Initializing /data/kazem/noname Report.html:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS