Started by upstream project "BIOFORMATS-test-repo" build number 73
originally caused by:
Started by upstream project "Trigger" build number 81
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14891348386398417302.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10985_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:24:19,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:19,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:19,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:19,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:19,973 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:19,973 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:19,973 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:19,974 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:19,974 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:24:19,975 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:24:19,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 606 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-24 01:24:19,994] [main] java.version = 1.8.0_342
[testng] 01:24:19,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:19,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:20,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-24-20.log]
[testng] 01:24:20,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-24 01:24:20,099] [main] testng.directory = /data
[testng] [2024-05-24 01:24:20,100] [main] testng.configDirectory = /config
[testng] [2024-05-24 01:24:20,128] [main] testng.multiplier = 1.0
[testng] [2024-05-24 01:24:20,129] [main] testng.in-memory = false
[testng] [2024-05-24 01:24:20,129] [main] testng.allow-missing = false
[testng] [2024-05-24 01:24:20,129] [main] user.language = en
[testng] [2024-05-24 01:24:20,129] [main] user.country = ${user.country}
[testng] [2024-05-24 01:24:20,129] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-24 01:24:21,624] [main] ----------------------------------------
[testng] [2024-05-24 01:24:21,624] [main] Total files: 15
[testng] [2024-05-24 01:24:21,624] [main] Scan time: 1.495 s (99 ms/file)
[testng] [2024-05-24 01:24:21,624] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-24 01:24:23,404] [pool-1-thread-1] Initializing /data/samples/emptykey/test.am:
[testng] 01:24:23,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:24:23,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-24-23.log]
[testng] 01:24:23,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4225e56b - End of configuration.
[testng] [2024-05-24 01:24:23,436] [pool-1-thread-11] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG:
[testng] 01:24:23,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:24:23,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-24-23.log]
[testng] 01:24:23,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3da9f716 - End of configuration.
[testng] [2024-05-24 01:24:23,444] [pool-1-thread-12] Initializing /data/public/ignacio/test.am:
[testng] 01:24:23,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:24:23,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-24-23.log]
[testng] 01:24:23,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56760598 - End of configuration.
[testng] [2024-05-24 01:24:23,460] [pool-1-thread-10] Initializing /data/public/imagesc-50585/BF_CheckMIB.am:
[testng] 01:24:23,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:24:23,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-24-23.log]
[testng] 01:24:23,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f81351 - End of configuration.
[testng] [2024-05-24 01:24:23,476] [pool-1-thread-9] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am:
[testng] 01:24:23,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:24:23,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-24-23.log]
[testng] 01:24:23,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ab099fe - End of configuration.
[testng] [2024-05-24 01:24:23,507] [pool-1-thread-8] Initializing /data/johannes/template.labels:
[testng] 01:24:23,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:24:23,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-24-23.log]
[testng] 01:24:23,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b4e75fc - End of configuration.
[testng] [2024-05-24 01:24:23,524] [pool-1-thread-7] Initializing /data/johannes/template.grey:
[testng] 01:24:23,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:24:23,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-24-23.log]
[testng] 01:24:23,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13080500 - End of configuration.
[testng] [2024-05-24 01:24:23,571] [pool-1-thread-6] Initializing /data/public/imagesc-50585/BF_Check.tif:
[testng] 01:24:23,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:24:23,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-24-23.log]
[testng] 01:24:23,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@278bc19 - End of configuration.
[testng] [2024-05-24 01:24:23,615] [pool-1-thread-5] Initializing /data/jeremy/Virus_Membrane7.am:
[testng] 01:24:23,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:24:23,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-24-23.log]
[testng] 01:24:23,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d5f595e - End of configuration.
[testng] [2024-05-24 01:24:23,646] [pool-1-thread-4] Initializing /data/public/imagesc-50585/BF_CheckAmira.am:
[testng] 01:24:23,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:24:23,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-24-23.log]
[testng] 01:24:23,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f41ada2 - End of configuration.
[testng] [2024-05-24 01:24:23,659] [pool-1-thread-3] Initializing /data/jeremy/Hiv_spikes.am:
[testng] 01:24:23,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:24:23,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-24-23.log]
[testng] 01:24:23,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@854dc10 - End of configuration.
[testng] [2024-05-24 01:24:23,681] [pool-1-thread-2] Initializing /data/ilya/test.am:
[testng] 01:24:23,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:24:23,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:23,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-24-23.log]
[testng] 01:24:23,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b822353 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS