Started by upstream project "BIOFORMATS-test-repo" build number 73
originally caused by:
Started by upstream project "Trigger" build number 81
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11434492628162762638.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11033_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:46:45,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:46:45,496 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:46:45,496 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:46:45,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:46:45,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:46:45,498 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:46:45,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:46:45,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:46:45,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:46:45,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:46:45,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:46:45,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:46:45,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:46:45,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:46:45,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:46:45,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:46:45,770 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:46:45,770 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:46:45,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:46:45,771 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:46:45,771 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:46:45,772 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:46:45,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-24 01:46:45,784] [main] java.version = 1.8.0_342
[testng] 01:46:45,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:46:45,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:45,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-46-45.log]
[testng] 01:46:45,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-24 01:46:45,838] [main] testng.directory = /data
[testng] [2024-05-24 01:46:45,838] [main] testng.configDirectory = /config
[testng] [2024-05-24 01:46:45,850] [main] testng.multiplier = 1.0
[testng] [2024-05-24 01:46:45,851] [main] testng.in-memory = false
[testng] [2024-05-24 01:46:45,851] [main] testng.allow-missing = false
[testng] [2024-05-24 01:46:45,851] [main] user.language = en
[testng] [2024-05-24 01:46:45,851] [main] user.country = ${user.country}
[testng] [2024-05-24 01:46:45,851] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-24 01:46:46,287] [main] ----------------------------------------
[testng] [2024-05-24 01:46:46,287] [main] Total files: 15
[testng] [2024-05-24 01:46:46,287] [main] Scan time: 0.436 s (29 ms/file)
[testng] [2024-05-24 01:46:46,287] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-24 01:46:52,771] [pool-1-thread-1] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 01:46:52,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:46:52,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:52,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-46-52.log]
[testng] 01:46:52,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607046db - End of configuration.
[testng] [2024-05-24 01:46:53,513] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc:
[testng] 01:46:53,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:46:53,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:53,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-46-53.log]
[testng] 01:46:53,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c56c6f - End of configuration.
[testng] [2024-05-24 01:46:53,528] [pool-1-thread-11] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc:
[testng] 01:46:53,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:46:53,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:53,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-46-53.log]
[testng] 01:46:53,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e8572f8 - End of configuration.
[testng] [2024-05-24 01:46:55,871] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 01:46:55,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:46:55,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:55,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-46-55.log]
[testng] 01:46:55,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587aaf63 - End of configuration.
[testng] [2024-05-24 01:46:55,959] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc:
[testng] 01:46:55,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:46:55,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:55,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-46-55.log]
[testng] 01:46:55,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fef6682 - End of configuration.
[testng] [2024-05-24 01:46:55,981] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 01:46:55,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:46:55,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:55,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-46-55.log]
[testng] 01:46:55,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd3e30b - End of configuration.
[testng] [2024-05-24 01:46:56,017] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 01:46:56,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:46:56,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-46-56.log]
[testng] 01:46:56,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a05110 - End of configuration.
[testng] [2024-05-24 01:46:56,031] [pool-1-thread-6] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 01:46:56,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:46:56,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-46-56.log]
[testng] 01:46:56,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ca5cac - End of configuration.
[testng] [2024-05-24 01:46:56,134] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 01:46:56,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:46:56,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-46-56.log]
[testng] 01:46:56,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196f24ce - End of configuration.
[testng] [2024-05-24 01:46:56,146] [pool-1-thread-4] Initializing /data/daren/test_32bit_float.mnc:
[testng] 01:46:56,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:46:56,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-46-56.log]
[testng] 01:46:56,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d5748b7 - End of configuration.
[testng] [2024-05-24 01:46:56,480] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc:
[testng] 01:46:56,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:46:56,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-46-56.log]
[testng] 01:46:56,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@119eb72 - End of configuration.
[testng] [2024-05-24 01:46:56,492] [pool-1-thread-2] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc:
[testng] 01:46:56,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:46:56,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:56,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-46-56.log]
[testng] 01:46:56,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@159fb3d2 - End of configuration.
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS