Started by upstream project "BIOFORMATS-test-repo" build number 73
originally caused by:
Started by upstream project "Trigger" build number 81
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5626582205741004199.sh
+ '[' fits = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11048_merge_ci -v /uod/idr/repos/curated/fits:/data -v /uod/idr-scratch/merge-ci/curated/fits:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:04:39,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:04:39,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:04:39,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:04:39,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:04:39,504 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:04:39,505 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:04:39,505 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:04:39,506 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:04:39,506 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:04:39,507 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:04:39,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 505 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-24 02:04:39,522] [main] java.version = 1.8.0_342
[testng] 02:04:39,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:04:39,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:39,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_02-04-39.log]
[testng] 02:04:39,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-24 02:04:39,626] [main] testng.directory = /data
[testng] [2024-05-24 02:04:39,626] [main] testng.configDirectory = /config
[testng] [2024-05-24 02:04:39,655] [main] testng.multiplier = 1.0
[testng] [2024-05-24 02:04:39,656] [main] testng.in-memory = false
[testng] [2024-05-24 02:04:39,656] [main] testng.allow-missing = false
[testng] [2024-05-24 02:04:39,656] [main] user.language = en
[testng] [2024-05-24 02:04:39,656] [main] user.country = ${user.country}
[testng] [2024-05-24 02:04:39,656] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-24 02:04:40,311] [main] ----------------------------------------
[testng] [2024-05-24 02:04:40,311] [main] Total files: 8
[testng] [2024-05-24 02:04:40,311] [main] Scan time: 0.655 s (81 ms/file)
[testng] [2024-05-24 02:04:40,311] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 8 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-24 02:04:41,228] [pool-1-thread-1] Initializing /data/curtis/x.fits:
[testng] 02:04:41,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:04:41,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_02-04-41.log]
[testng] 02:04:41,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593262f2 - End of configuration.
[testng] [2024-05-24 02:04:41,292] [pool-1-thread-8] Initializing /data/jacques/spool_b._X7.fits:
[testng] 02:04:41,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:04:41,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_02-04-41.log]
[testng] 02:04:41,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cb6b448 - End of configuration.
[testng] [2024-05-24 02:04:41,307] [pool-1-thread-7] Initializing /data/curtis/rosat.fits:
[testng] 02:04:41,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:04:41,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_02-04-41.log]
[testng] 02:04:41,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@117c216c - End of configuration.
[testng] [2024-05-24 02:04:41,321] [pool-1-thread-6] Initializing /data/curtis/vogtstar.fits:
[testng] 02:04:41,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:04:41,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_02-04-41.log]
[testng] 02:04:41,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45014310 - End of configuration.
[testng] [2024-05-24 02:04:41,337] [pool-1-thread-5] Initializing /data/jacques/spool_c_Jacques_Pecreaux._X2.fits:
[testng] 02:04:41,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:04:41,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_02-04-41.log]
[testng] 02:04:41,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c1bd7a - End of configuration.
[testng] [2024-05-24 02:04:41,350] [pool-1-thread-4] Initializing /data/jacques/spool_b._X7.061023-2.fits:
[testng] 02:04:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:04:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_02-04-41.log]
[testng] 02:04:41,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56367420 - End of configuration.
[testng] [2024-05-24 02:04:41,359] [pool-1-thread-3] Initializing /data/hla/hlsp_coma_hst_acs-wfc_v19_f814w_v1_ivm-drz-cl.fits:
[testng] 02:04:41,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:04:41,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_02-04-41.log]
[testng] 02:04:41,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37dcbf02 - End of configuration.
[testng] [2024-05-24 02:04:41,378] [pool-1-thread-2] Initializing /data/curtis/rosat.fits.gz:
[testng] 02:04:41,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:04:41,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:41,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_02-04-41.log]
[testng] 02:04:41,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c4c5e2 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 424, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS