Started by upstream project "BIOFORMATS-test-repo" build number 73
originally caused by:
Started by upstream project "Trigger" build number 81
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins7076817655879026465.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11056_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:14:47,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:14:48,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:14:48,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:14:48,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:14:48,133 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:14:48,133 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:14:48,133 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:14:48,133 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:14:48,134 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:14:48,135 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:14:48,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 628 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-24 02:14:48,163] [main] java.version = 1.8.0_342
[testng] 02:14:48,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:14:48,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:48,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_02-14-48.log]
[testng] 02:14:48,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-24 02:14:48,392] [main] testng.directory = /data
[testng] [2024-05-24 02:14:48,393] [main] testng.configDirectory = /config
[testng] [2024-05-24 02:14:48,467] [main] testng.multiplier = 1.0
[testng] [2024-05-24 02:14:48,468] [main] testng.in-memory = false
[testng] [2024-05-24 02:14:48,468] [main] testng.allow-missing = false
[testng] [2024-05-24 02:14:48,468] [main] user.language = en
[testng] [2024-05-24 02:14:48,468] [main] user.country = ${user.country}
[testng] [2024-05-24 02:14:48,468] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-24 02:14:49,375] [main] ----------------------------------------
[testng] [2024-05-24 02:14:49,375] [main] Total files: 19
[testng] [2024-05-24 02:14:49,375] [main] Scan time: 0.907 s (47 ms/file)
[testng] [2024-05-24 02:14:49,375] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-24 02:14:51,852] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:14:51,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:14:51,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:51,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_02-14-51.log]
[testng] 02:14:51,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ac4dfad - End of configuration.
[testng] [2024-05-24 02:14:52,026] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:14:52,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:14:52,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_02-14-52.log]
[testng] 02:14:52,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration.
[testng] [2024-05-24 02:14:52,160] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:14:52,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:14:52,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_02-14-52.log]
[testng] 02:14:52,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da33d02 - End of configuration.
[testng] [2024-05-24 02:14:52,275] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 02:14:52,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:14:52,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_02-14-52.log]
[testng] 02:14:52,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26563289 - End of configuration.
[testng] [2024-05-24 02:14:52,362] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:14:52,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:14:52,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_02-14-52.log]
[testng] 02:14:52,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15903fda - End of configuration.
[testng] [2024-05-24 02:14:52,487] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:14:52,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:14:52,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_02-14-52.log]
[testng] 02:14:52,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2129769 - End of configuration.
[testng] [2024-05-24 02:14:52,852] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:14:52,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:14:52,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_02-14-52.log]
[testng] 02:14:52,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1b6e4b - End of configuration.
[testng] [2024-05-24 02:14:52,948] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:14:52,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:14:52,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:52,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_02-14-52.log]
[testng] 02:14:52,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration.
[testng] [2024-05-24 02:14:53,019] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 02:14:53,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:14:53,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:53,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_02-14-53.log]
[testng] 02:14:53,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration.
[testng] [2024-05-24 02:14:53,099] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:14:53,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:14:53,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:53,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_02-14-53.log]
[testng] 02:14:53,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d2419e - End of configuration.
[testng] [2024-05-24 02:14:53,763] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 02:14:53,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:14:53,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:53,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_02-14-53.log]
[testng] 02:14:53,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21eb1aa3 - End of configuration.
[testng] [2024-05-24 02:14:53,918] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:14:53,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:14:53,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:53,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_02-14-53.log]
[testng] 02:14:53,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration.
[testng] [2024-05-24 02:15:06,506] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-05-24 02:15:06,548] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-05-24 02:15:06,592] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-05-24 02:15:06,652] [pool-1-thread-5] Initializing /data/samples/3200R PICT0006.MRW:
[testng] [2024-05-24 02:15:06,768] [pool-1-thread-4] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-05-24 02:15:07,555] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-05-24 02:15:07,580] [pool-1-thread-12] Initializing /data/samples/800R PICT0010.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 33 seconds
Finished: SUCCESS