Started by upstream project "BIOFORMATS-test-repo" build number 75
originally caused by:
Started by upstream project "Trigger" build number 83
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4520881172231672563.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11422_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:23:10,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:23:10,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:23:10,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:23:10,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:23:10,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:23:10,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:23:10,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:23:10,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:23:10,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:23:10,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:23:10,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:23:10,261 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:23:10,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:23:10,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:23:10,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:23:10,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:23:10,546 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:23:10,547 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:23:10,547 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:23:10,547 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:23:10,547 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:23:10,548 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:23:10,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-26 02:23:10,558] [main] java.version = 17.0.2
[testng] 02:23:10,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:23:10,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:10,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-26_02-23-10.log]
[testng] 02:23:10,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-26 02:23:10,649] [main] testng.directory = /data
[testng] [2024-05-26 02:23:10,650] [main] testng.configDirectory = /config
[testng] [2024-05-26 02:23:10,660] [main] testng.multiplier = 1.0
[testng] [2024-05-26 02:23:10,661] [main] testng.in-memory = false
[testng] [2024-05-26 02:23:10,661] [main] testng.allow-missing = false
[testng] [2024-05-26 02:23:10,661] [main] user.language = en
[testng] [2024-05-26 02:23:10,661] [main] user.country = ${user.country}
[testng] [2024-05-26 02:23:10,661] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-26 02:23:11,092] [main] ----------------------------------------
[testng] [2024-05-26 02:23:11,093] [main] Total files: 18
[testng] [2024-05-26 02:23:11,093] [main] Scan time: 0.431 s (23 ms/file)
[testng] [2024-05-26 02:23:11,093] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-26 02:23:12,765] [pool-1-thread-1] Initializing /data/cris/house.tif:
[testng] 02:23:12,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:23:12,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:12,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-26_02-23-12.log]
[testng] 02:23:12,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e82d11 - End of configuration.
[testng] [2024-05-26 02:23:12,832] [pool-1-thread-12] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 02:23:12,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:23:12,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:12,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-26_02-23-12.log]
[testng] 02:23:12,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453f54fc - End of configuration.
[testng] [2024-05-26 02:23:12,889] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 02:23:12,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:23:12,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:12,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-26_02-23-12.log]
[testng] 02:23:12,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@610ff190 - End of configuration.
[testng] [2024-05-26 02:23:12,955] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 02:23:12,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:23:12,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:12,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-26_02-23-12.log]
[testng] 02:23:12,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e3d2b36 - End of configuration.
[testng] [2024-05-26 02:23:13,034] [pool-1-thread-9] Initializing /data/ascb/423.psd:
[testng] 02:23:13,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:23:13,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-26_02-23-13.log]
[testng] 02:23:13,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e562ef - End of configuration.
[testng] [2024-05-26 02:23:13,185] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd:
[testng] 02:23:13,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:23:13,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-26_02-23-13.log]
[testng] 02:23:13,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9ed675 - End of configuration.
[testng] [2024-05-26 02:23:13,212] [pool-1-thread-7] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 02:23:13,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:23:13,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-26_02-23-13.log]
[testng] 02:23:13,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3c02cf - End of configuration.
[testng] [2024-05-26 02:23:13,320] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 02:23:13,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:23:13,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-26_02-23-13.log]
[testng] 02:23:13,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511d3085 - End of configuration.
[testng] [2024-05-26 02:23:13,420] [pool-1-thread-5] Initializing /data/ascb/607x.psd:
[testng] 02:23:13,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:23:13,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-26_02-23-13.log]
[testng] 02:23:13,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191090b7 - End of configuration.
[testng] [2024-05-26 02:23:13,604] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd:
[testng] 02:23:13,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:23:13,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-26_02-23-13.log]
[testng] 02:23:13,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9dc661 - End of configuration.
[testng] [2024-05-26 02:23:13,666] [pool-1-thread-3] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 02:23:13,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:23:13,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-26_02-23-13.log]
[testng] 02:23:13,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417bbda - End of configuration.
[testng] [2024-05-26 02:23:13,921] [pool-1-thread-2] Initializing /data/misc/smilie.psd:
[testng] 02:23:13,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:23:13,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:13,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-26_02-23-13.log]
[testng] 02:23:13,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8f3373 - End of configuration.
[testng] [2024-05-26 02:23:17,956] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] [2024-05-26 02:23:18,029] [pool-1-thread-1] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2024-05-26 02:23:18,070] [pool-1-thread-11] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] [2024-05-26 02:23:18,201] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd:
[testng] [2024-05-26 02:23:18,913] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-05-26 02:23:19,551] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 45 seconds
Finished: SUCCESS