Started by upstream project "BIOFORMATS-test-repo" build number 76
originally caused by:
Started by upstream project "Trigger" build number 84
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4551082788413505383.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11464_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:58,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:21:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:58,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:58,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:58,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:58,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:58,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:58,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:58,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:58,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:58,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:58,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:58,601 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:58,604 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:58,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:58,611 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:58,612 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:21:58,621 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:21:58,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-27 01:21:58,695] [main] java.version = 1.8.0_342
[testng] 01:21:58,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:58,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:58,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_01-21-58.log]
[testng] 01:21:58,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-27 01:21:58,781] [main] testng.directory = /data
[testng] [2024-05-27 01:21:58,781] [main] testng.configDirectory = /config
[testng] [2024-05-27 01:21:58,795] [main] testng.multiplier = 1.0
[testng] [2024-05-27 01:21:58,795] [main] testng.in-memory = false
[testng] [2024-05-27 01:21:58,795] [main] testng.allow-missing = false
[testng] [2024-05-27 01:21:58,796] [main] user.language = fr
[testng] [2024-05-27 01:21:58,796] [main] user.country = FR
[testng] [2024-05-27 01:21:58,796] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-27 01:22:21,343] [main] ----------------------------------------
[testng] [2024-05-27 01:22:21,344] [main] Total files: 283
[testng] [2024-05-27 01:22:21,344] [main] Scan time: 22.547 s (79 ms/file)
[testng] [2024-05-27 01:22:21,344] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-27 01:31:54,649] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:31:54,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:54,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:54,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-27_01-31-54.log]
[testng] 01:31:54,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21094c01 - End of configuration.
[testng] [2024-05-27 01:31:54,674] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] 01:31:54,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:54,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:54,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-27_01-31-54.log]
[testng] 01:31:54,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d495ece - End of configuration.
[testng] [2024-05-27 01:31:54,888] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:31:54,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:54,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:54,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-27_01-31-54.log]
[testng] 01:31:54,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cefaf73 - End of configuration.
[testng] [2024-05-27 01:31:54,946] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] 01:31:54,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:54,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:54,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-27_01-31-54.log]
[testng] 01:31:54,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@480cae28 - End of configuration.
[testng] [2024-05-27 01:31:55,059] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] 01:31:55,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:55,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:55,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-27_01-31-55.log]
[testng] 01:31:55,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e54bdc0 - End of configuration.
[testng] [2024-05-27 01:31:55,161] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 01:31:55,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:55,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:55,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-27_01-31-55.log]
[testng] 01:31:55,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a47707f - End of configuration.
[testng] [2024-05-27 01:31:55,493] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] 01:31:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:55,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-27_01-31-55.log]
[testng] 01:31:55,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e21dd - End of configuration.
[testng] [2024-05-27 01:31:55,813] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 01:31:55,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:55,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:55,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-27_01-31-55.log]
[testng] 01:31:55,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61bef709 - End of configuration.
[testng] [2024-05-27 01:31:56,100] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] 01:31:56,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:56,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:56,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-27_01-31-56.log]
[testng] 01:31:56,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a625802 - End of configuration.
[testng] [2024-05-27 01:31:56,572] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 01:31:56,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:56,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:56,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-27_01-31-56.log]
[testng] 01:31:56,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1952b94f - End of configuration.
[testng] [2024-05-27 01:31:56,617] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 01:31:56,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:56,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:56,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-27_01-31-56.log]
[testng] 01:31:56,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66edb25 - End of configuration.
[testng] [2024-05-27 01:31:56,664] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] 01:31:56,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:31:56,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:56,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-27_01-31-56.log]
[testng] 01:31:56,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a20edf2 - End of configuration.
[testng] [2024-05-27 01:31:59,508] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-05-27 01:31:59,552] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-05-27 01:31:59,598] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-05-27 01:31:59,883] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-05-27 01:32:00,054] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-05-27 01:32:00,099] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-05-27 01:32:01,454] [pool-1-thread-10] Initializing /data/qa-17270/image1.oir:
[testng] [2024-05-27 01:32:01,590] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-05-27 01:32:01,710] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-05-27 01:32:02,137] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-05-27 01:32:03,523] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-05-27 01:32:03,739] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-05-27 01:32:03,827] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-05-27 01:32:04,134] [pool-1-thread-7] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-05-27 01:32:04,325] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-05-27 01:32:04,430] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-05-27 01:32:04,759] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-05-27 01:32:04,863] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-05-27 01:32:05,299] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-05-27 01:32:05,951] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-05-27 01:32:06,230] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-05-27 01:32:10,195] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-05-27 01:32:10,365] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-05-27 01:32:10,970] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-05-27 01:32:11,348] [pool-1-thread-4] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-05-27 01:32:14,560] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-05-27 01:32:14,719] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-05-27 01:32:15,071] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-05-27 01:32:19,027] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-05-27 01:32:19,516] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-05-27 01:32:20,058] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-05-27 01:32:20,248] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-05-27 01:32:27,562] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-05-27 01:32:28,542] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-05-27 01:32:28,657] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-05-27 01:32:28,740] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-05-27 01:32:29,150] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-05-27 01:32:29,518] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-05-27 01:32:31,021] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-05-27 01:32:31,226] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-05-27 01:32:31,370] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-05-27 01:32:32,002] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-05-27 01:32:32,105] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-05-27 01:32:32,554] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-05-27 01:32:39,463] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-05-27 01:32:41,289] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-05-27 01:32:41,356] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-05-27 01:32:42,443] [pool-1-thread-5] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-05-27 01:32:46,303] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-05-27 01:32:46,563] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-05-27 01:32:47,025] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-05-27 01:32:48,833] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-05-27 01:32:49,040] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-05-27 01:32:49,823] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-05-27 01:32:50,559] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-05-27 01:32:50,954] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-05-27 01:32:55,626] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-05-27 01:32:56,445] [pool-1-thread-9] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-05-27 01:32:56,854] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-05-27 01:32:58,390] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-05-27 01:32:58,720] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-05-27 01:32:59,925] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-05-27 01:33:00,075] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-05-27 01:33:03,867] [pool-1-thread-9] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-05-27 01:33:04,494] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-05-27 01:33:05,200] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-05-27 01:33:05,265] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-05-27 01:33:05,927] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-05-27 01:33:06,501] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-05-27 01:33:06,642] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-05-27 01:33:07,118] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-05-27 01:33:07,398] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-05-27 01:34:13,479] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-05-27 01:34:14,441] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-05-27 01:34:15,393] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-05-27 01:34:15,995] [pool-1-thread-6] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-05-27 01:34:16,965] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-05-27 01:34:17,221] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-05-27 01:34:17,472] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-05-27 01:34:18,771] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-05-27 01:34:18,875] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-05-27 01:34:19,655] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-05-27 01:34:20,989] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-05-27 01:34:30,443] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-05-27 01:34:31,604] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-05-27 01:34:32,944] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-05-27 01:34:38,240] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-05-27 01:34:39,658] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-05-27 01:34:40,840] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-05-27 01:34:45,218] [pool-1-thread-9] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-05-27 01:34:49,371] [pool-1-thread-7] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-05-27 01:34:49,970] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-05-27 01:34:54,568] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-05-27 01:34:54,647] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-05-27 01:34:57,892] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-05-27 01:34:58,056] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-05-27 01:34:59,002] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-05-27 01:34:59,281] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-05-27 01:35:00,200] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-05-27 01:35:00,452] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-05-27 01:35:49,175] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-05-27 01:35:49,819] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-05-27 01:35:51,993] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-05-27 01:35:52,280] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-05-27 01:35:53,511] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-05-27 01:36:01,427] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-05-27 01:36:02,574] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-05-27 01:36:04,809] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-05-27 01:36:05,677] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-05-27 01:36:05,733] [pool-1-thread-11] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-05-27 01:36:06,090] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-05-27 01:36:20,918] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-05-27 01:36:31,220] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-05-27 01:36:31,384] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-05-27 01:36:32,833] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-05-27 01:37:20,489] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-05-27 01:37:20,596] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-05-27 01:37:20,850] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-05-27 01:37:21,616] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-05-27 01:37:21,889] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-05-27 01:37:22,850] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-05-27 01:37:23,198] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-05-27 01:37:23,560] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-05-27 01:37:24,209] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-05-27 01:37:24,358] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-05-27 01:37:25,800] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-05-27 01:37:25,987] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-05-27 01:37:26,267] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-05-27 01:37:31,673] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-05-27 01:37:32,730] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-05-27 01:37:33,389] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-05-27 01:37:34,002] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-05-27 01:37:36,078] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-05-27 01:37:43,773] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-05-27 01:37:45,019] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-05-27 01:37:45,781] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-05-27 01:37:46,725] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-05-27 01:37:47,436] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-05-27 01:37:48,470] [pool-1-thread-4] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-05-27 01:37:48,850] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-05-27 01:37:49,103] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-05-27 01:37:49,923] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-05-27 01:37:50,224] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-05-27 01:37:52,562] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-05-27 01:37:53,816] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-05-27 01:37:55,021] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-05-27 01:37:55,435] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-05-27 01:37:55,989] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-05-27 01:37:56,681] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-05-27 01:37:57,167] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-05-27 01:38:06,568] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-05-27 01:38:07,465] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-05-27 01:38:08,551] [pool-1-thread-2] Initializing /data/olympus/XYZt.oir:
[testng] [2024-05-27 01:38:20,355] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-05-27 01:38:21,477] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-05-27 01:38:22,244] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-05-27 01:38:23,305] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-05-27 01:38:24,539] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-05-27 01:38:24,959] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-05-27 01:38:26,263] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-05-27 01:38:27,149] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-05-27 01:38:29,736] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-05-27 01:38:29,921] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-05-27 01:38:31,065] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-05-27 01:38:31,159] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-05-27 01:38:32,394] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-05-27 01:38:35,296] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-05-27 01:38:36,600] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-05-27 01:40:08,572] [pool-1-thread-10] Initializing /data/qa-17335/1.oir:
[testng] [2024-05-27 01:40:09,304] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-05-27 01:40:10,573] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-05-27 01:40:11,779] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-05-27 01:40:12,836] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-05-27 01:40:22,022] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 02:32:26,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:32:26,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:32:26,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_02-32-26.log]
[testng] 02:32:26,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 70 minutes 33 seconds
Finished: SUCCESS