Started by upstream project "BIOFORMATS-test-repo" build number 76
originally caused by:
 Started by upstream project "Trigger" build number 84
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins6965450597577546582.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11477_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:24:41,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:24:41,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:24:41,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:24:41,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:24:41,935 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:24:41,936 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:24:41,936 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:24:41,936 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:24:41,936 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
   [testng] 01:24:41,937 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
   [testng] 01:24:41,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 692 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-27 01:24:41,950] [main] java.version = 1.8.0_342
   [testng] 01:24:41,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:24:41,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:42,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_01-24-41.log]
   [testng] 01:24:42,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-05-27 01:24:42,053] [main] testng.directory = /data
   [testng] [2024-05-27 01:24:42,054] [main] testng.configDirectory = /config
   [testng] [2024-05-27 01:24:42,101] [main] testng.multiplier = 1.0
   [testng] [2024-05-27 01:24:42,101] [main] testng.in-memory = false
   [testng] [2024-05-27 01:24:42,102] [main] testng.allow-missing = false
   [testng] [2024-05-27 01:24:42,102] [main] user.language = fr
   [testng] [2024-05-27 01:24:42,102] [main] user.country = FR
   [testng] [2024-05-27 01:24:42,102] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-05-27 01:24:42,937] [main] ----------------------------------------
   [testng] [2024-05-27 01:24:42,937] [main] Total files: 15
   [testng] [2024-05-27 01:24:42,937] [main] Scan time: 0.835 s (55 ms/file)
   [testng] [2024-05-27 01:24:42,937] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 12 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-27 01:24:44,251] [pool-1-thread-1] Initializing /data/jeremy/Hiv_spikes.am: 
   [testng] 01:24:44,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:24:44,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-27_01-24-44.log]
   [testng] 01:24:44,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dd6caeb - End of configuration.
   [testng] [2024-05-27 01:24:44,281] [pool-1-thread-12] Initializing /data/public/imagesc-50585/BF_CheckAmira.am: 
   [testng] 01:24:44,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:24:44,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-27_01-24-44.log]
   [testng] 01:24:44,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@172ec0cc - End of configuration.
   [testng] [2024-05-27 01:24:44,297] [pool-1-thread-11] Initializing /data/johannes/template.grey: 
   [testng] 01:24:44,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:24:44,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-27_01-24-44.log]
   [testng] 01:24:44,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4baa6e - End of configuration.
   [testng] [2024-05-27 01:24:44,342] [pool-1-thread-10] Initializing /data/ilya/test.am: 
   [testng] 01:24:44,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:24:44,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-27_01-24-44.log]
   [testng] 01:24:44,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b0956d - End of configuration.
   [testng] [2024-05-27 01:24:44,386] [pool-1-thread-9] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG: 
   [testng] 01:24:44,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:24:44,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-27_01-24-44.log]
   [testng] 01:24:44,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a65c49 - End of configuration.
   [testng] [2024-05-27 01:24:44,391] [pool-1-thread-8] Initializing /data/public/imagesc-50585/BF_Check.tif: 
   [testng] 01:24:44,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:24:44,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-27_01-24-44.log]
   [testng] 01:24:44,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6212b984 - End of configuration.
   [testng] [2024-05-27 01:24:44,420] [pool-1-thread-7] Initializing /data/public/ignacio/test.am: 
   [testng] 01:24:44,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:24:44,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-27_01-24-44.log]
   [testng] 01:24:44,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a657a7f - End of configuration.
   [testng] [2024-05-27 01:24:44,433] [pool-1-thread-6] Initializing /data/public/imagesc-50585/BF_CheckMIB.am: 
   [testng] 01:24:44,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:24:44,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-27_01-24-44.log]
   [testng] 01:24:44,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2472c989 - End of configuration.
   [testng] [2024-05-27 01:24:44,446] [pool-1-thread-5] Initializing /data/johannes/template.labels: 
   [testng] 01:24:44,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:24:44,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-27_01-24-44.log]
   [testng] 01:24:44,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@237bd84e - End of configuration.
   [testng] [2024-05-27 01:24:44,459] [pool-1-thread-4] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am: 
   [testng] 01:24:44,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:24:44,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-27_01-24-44.log]
   [testng] 01:24:44,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a86aef4 - End of configuration.
   [testng] [2024-05-27 01:24:44,489] [pool-1-thread-3] Initializing /data/samples/emptykey/test.am: 
   [testng] 01:24:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:24:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-27_01-24-44.log]
   [testng] 01:24:44,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ae3c568 - End of configuration.
   [testng] [2024-05-27 01:24:44,503] [pool-1-thread-2] Initializing /data/jeremy/Virus_Membrane7.am: 
   [testng] 01:24:44,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:24:44,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:44,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-27_01-24-44.log]
   [testng] 01:24:44,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475538d - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 636, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS