Started by upstream project "BIOFORMATS-test-repo" build number 8
originally caused by:
Started by upstream project "Trigger" build number 11
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1541291801373211106.sh
+ '[' cellworx = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1154_merge_ci -v /uod/idr/repos/curated/cellworx:/data -v /uod/idr-scratch/merge-ci/curated/cellworx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:29:17,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:29:17,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:29:17,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:29:17,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:29:17,992 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:29:17,992 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:29:17,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:29:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:29:17,993 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 00:29:17,995 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 00:29:17,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 439 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-22 00:29:18,012] [main] java.version = 1.8.0_342
[testng] 00:29:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:29:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:18,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-22_00-29-18.log]
[testng] 00:29:18,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-22 00:29:18,093] [main] testng.directory = /data
[testng] [2024-03-22 00:29:18,094] [main] testng.configDirectory = /config
[testng] [2024-03-22 00:29:18,111] [main] testng.multiplier = 1.0
[testng] [2024-03-22 00:29:18,112] [main] testng.in-memory = false
[testng] [2024-03-22 00:29:18,112] [main] testng.allow-missing = false
[testng] [2024-03-22 00:29:18,112] [main] user.language = en
[testng] [2024-03-22 00:29:18,112] [main] user.country = ${user.country}
[testng] [2024-03-22 00:29:18,112] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-22 00:30:15,446] [main] ----------------------------------------
[testng] [2024-03-22 00:30:15,447] [main] Total files: 4
[testng] [2024-03-22 00:30:15,447] [main] Scan time: 57.334 s (14333 ms/file)
[testng] [2024-03-22 00:30:15,447] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 4 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-22 00:31:04,125] [pool-1-thread-1] Initializing /data/hms/96-well-sample-dataset/PNL_Representative_Data_Set_96_Well/PNL_Representative_Data_Set_96_Well.HTD:
[testng] 00:31:04,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:31:04,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:04,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-22_00-31-04.log]
[testng] 00:31:04,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d2bd41 - End of configuration.
[testng] [2024-03-22 00:31:05,114] [pool-1-thread-4] Initializing /data/hms/plate1/plate1.HTD:
[testng] 00:31:05,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:31:05,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:05,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-22_00-31-05.log]
[testng] 00:31:05,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e9fef6f - End of configuration.
[testng] [2024-03-22 00:31:05,980] [pool-1-thread-3] Initializing /data/hms/184A1-225/184A1-225.HTD:
[testng] 00:31:05,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:31:05,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:05,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-22_00-31-05.log]
[testng] 00:31:05,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a684e82 - End of configuration.
[testng] [2024-03-22 00:31:08,190] [pool-1-thread-2] Initializing /data/pki/SKMEL28_10K_1.HTD:
[testng] 00:31:08,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:31:08,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:08,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-22_00-31-08.log]
[testng] 00:31:08,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a08ac9 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 212, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 4 seconds
Finished: SUCCESS