Started by upstream project "BIOFORMATS-test-repo" build number 77
originally caused by:
 Started by upstream project "Trigger" build number 85
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15667270820610542481.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11698_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:48:33,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:48:33,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:48:33,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:33,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:33,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:48:33,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:48:33,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:48:33,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:33,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:33,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:48:33,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:48:33,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:48:33,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:48:33,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:48:33,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:48:33,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:48:33,656 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:48:33,656 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:48:33,656 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:48:33,657 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:48:33,657 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:48:33,658 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:48:33,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-28 01:48:33,667] [main] java.version = 11.0.16
   [testng] 01:48:33,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:48:33,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:33,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-28_01-48-33.log]
   [testng] 01:48:33,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-05-28 01:48:33,718] [main] testng.directory = /data
   [testng] [2024-05-28 01:48:33,719] [main] testng.configDirectory = /config
   [testng] [2024-05-28 01:48:33,729] [main] testng.multiplier = 1.0
   [testng] [2024-05-28 01:48:33,730] [main] testng.in-memory = false
   [testng] [2024-05-28 01:48:33,730] [main] testng.allow-missing = false
   [testng] [2024-05-28 01:48:33,730] [main] user.language = en
   [testng] [2024-05-28 01:48:33,730] [main] user.country = ${user.country}
   [testng] [2024-05-28 01:48:33,730] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-05-28 01:48:34,407] [main] ----------------------------------------
   [testng] [2024-05-28 01:48:34,407] [main] Total files: 16
   [testng] [2024-05-28 01:48:34,407] [main] Scan time: 0.676 s (42 ms/file)
   [testng] [2024-05-28 01:48:34,407] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-28 01:48:43,300] [pool-1-thread-1] Initializing /data/samples/5371.afi: 
   [testng] 01:48:43,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:48:43,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-28_01-48-43.log]
   [testng] 01:48:43,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@112bd2f1 - End of configuration.
   [testng] [2024-05-28 01:48:43,383] [pool-1-thread-12] Initializing /data/samples/5440.afi: 
   [testng] 01:48:43,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:48:43,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-28_01-48-43.log]
   [testng] 01:48:43,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce7388d - End of configuration.
   [testng] [2024-05-28 01:48:43,555] [pool-1-thread-11] Initializing /data/samples/5358.afi: 
   [testng] 01:48:43,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:48:43,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-28_01-48-43.log]
   [testng] 01:48:43,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e0752c - End of configuration.
   [testng] [2024-05-28 01:48:43,708] [pool-1-thread-10] Initializing /data/samples/5339.afi: 
   [testng] 01:48:43,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:48:43,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-28_01-48-43.log]
   [testng] 01:48:43,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@533170ab - End of configuration.
   [testng] [2024-05-28 01:48:43,765] [pool-1-thread-9] Initializing /data/samples/5306.afi: 
   [testng] 01:48:43,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:48:43,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-28_01-48-43.log]
   [testng] 01:48:43,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b97dff - End of configuration.
   [testng] [2024-05-28 01:48:43,848] [pool-1-thread-8] Initializing /data/samples/5414.afi: 
   [testng] 01:48:43,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:48:43,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-28_01-48-43.log]
   [testng] 01:48:43,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8a6ddc - End of configuration.
   [testng] [2024-05-28 01:48:43,946] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:48:43,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:48:43,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:43,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-28_01-48-43.log]
   [testng] 01:48:43,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464e2340 - End of configuration.
   [testng] [2024-05-28 01:48:44,061] [pool-1-thread-6] Initializing /data/samples/5407.afi: 
   [testng] 01:48:44,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:48:44,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:44,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-28_01-48-44.log]
   [testng] 01:48:44,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23368578 - End of configuration.
   [testng] [2024-05-28 01:48:44,115] [pool-1-thread-5] Initializing /data/samples/5383.afi: 
   [testng] 01:48:44,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:48:44,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:44,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-28_01-48-44.log]
   [testng] 01:48:44,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@584faeaf - End of configuration.
   [testng] [2024-05-28 01:48:44,171] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:48:44,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:48:44,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:44,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-28_01-48-44.log]
   [testng] 01:48:44,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f5acf23 - End of configuration.
   [testng] [2024-05-28 01:48:44,230] [pool-1-thread-3] Initializing /data/samples/5347.afi: 
   [testng] 01:48:44,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:48:44,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:44,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-28_01-48-44.log]
   [testng] 01:48:44,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b128357 - End of configuration.
   [testng] [2024-05-28 01:48:44,313] [pool-1-thread-2] Initializing /data/samples/5351.afi: 
   [testng] 01:48:44,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:48:44,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:44,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-28_01-48-44.log]
   [testng] 01:48:44,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c17ea8c - End of configuration.
   [testng] [2024-05-28 01:49:34,756] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] [2024-05-28 01:49:39,221] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] [2024-05-28 01:49:42,794] [pool-1-thread-11] Initializing /data/samples/5365.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 13 seconds
Finished: SUCCESS