Started by upstream project "BIOFORMATS-test-repo" build number 77
originally caused by:
Started by upstream project "Trigger" build number 85
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17365369807634777362.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11703_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:56:17,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:56:17,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:56:17,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:56:17,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:56:17,375 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:56:17,375 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:56:17,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:56:17,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:56:17,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:56:17,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:56:17,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:56:17,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:56:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:56:17,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:56:17,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:56:17,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:56:17,663 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:56:17,663 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:56:17,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:56:17,664 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:56:17,664 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:56:17,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:56:17,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-28 01:56:17,692] [main] java.version = 11.0.16
[testng] 01:56:17,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:56:17,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:56:17,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-28_01-56-17.log]
[testng] 01:56:17,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-05-28 01:56:17,756] [main] testng.directory = /data
[testng] [2024-05-28 01:56:17,756] [main] testng.configDirectory = /config
[testng] [2024-05-28 01:56:17,816] [main] testng.multiplier = 1.0
[testng] [2024-05-28 01:56:17,817] [main] testng.in-memory = false
[testng] [2024-05-28 01:56:17,817] [main] testng.allow-missing = false
[testng] [2024-05-28 01:56:17,817] [main] user.language = en
[testng] [2024-05-28 01:56:17,818] [main] user.country = ${user.country}
[testng] [2024-05-28 01:56:17,818] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-28 01:56:18,680] [main] ----------------------------------------
[testng] [2024-05-28 01:56:18,681] [main] Total files: 40
[testng] [2024-05-28 01:56:18,681] [main] Scan time: 0.862 s (21 ms/file)
[testng] [2024-05-28 01:56:18,681] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-28 02:00:23,616] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi:
[testng] 02:00:23,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:00:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:23,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-28_02-00-23.log]
[testng] 02:00:23,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfc286c - End of configuration.
[testng] [2024-05-28 02:00:23,684] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi:
[testng] 02:00:23,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:00:23,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:23,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-28_02-00-23.log]
[testng] 02:00:23,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41954941 - End of configuration.
[testng] [2024-05-28 02:00:23,962] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 02:00:23,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:00:23,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:23,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-28_02-00-23.log]
[testng] 02:00:23,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120bce1f - End of configuration.
[testng] [2024-05-28 02:00:23,978] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 02:00:23,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:00:23,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:23,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-28_02-00-23.log]
[testng] 02:00:23,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db7ac6a - End of configuration.
[testng] [2024-05-28 02:00:24,015] [pool-1-thread-9] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] 02:00:24,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:00:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:24,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-28_02-00-24.log]
[testng] 02:00:24,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73cffd19 - End of configuration.
[testng] [2024-05-28 02:00:24,065] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] 02:00:24,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:00:24,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:24,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-28_02-00-24.log]
[testng] 02:00:24,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ca2288 - End of configuration.
[testng] [2024-05-28 02:00:24,121] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 02:00:24,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:00:24,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:24,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-28_02-00-24.log]
[testng] 02:00:24,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0bc729 - End of configuration.
[testng] [2024-05-28 02:00:24,136] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] 02:00:24,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:00:24,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:24,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-28_02-00-24.log]
[testng] 02:00:24,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203623cf - End of configuration.
[testng] [2024-05-28 02:01:05,101] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] 02:01:05,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:01:05,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-28_02-01-05.log]
[testng] 02:01:05,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@455ea240 - End of configuration.
[testng] [2024-05-28 02:01:05,139] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] 02:01:05,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:01:05,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-28_02-01-05.log]
[testng] 02:01:05,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d50678 - End of configuration.
[testng] [2024-05-28 02:01:05,163] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi:
[testng] 02:01:05,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:01:05,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-28_02-01-05.log]
[testng] 02:01:05,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5341054a - End of configuration.
[testng] [2024-05-28 02:01:09,312] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi:
[testng] 02:01:09,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:01:09,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:09,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-28_02-01-09.log]
[testng] 02:01:09,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15affc39 - End of configuration.
[testng] [2024-05-28 02:01:11,701] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-05-28 02:01:11,725] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] [2024-05-28 02:01:11,749] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] [2024-05-28 02:01:11,774] [pool-1-thread-4] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2024-05-28 02:01:11,820] [pool-1-thread-5] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] [2024-05-28 02:01:11,836] [pool-1-thread-9] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] [2024-05-28 02:01:11,873] [pool-1-thread-12] Initializing /data/william/worm.avi:
[testng] [2024-05-28 02:01:11,881] [pool-1-thread-2] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] [2024-05-28 02:01:11,917] [pool-1-thread-8] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-05-28 02:01:11,944] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2024-05-28 02:01:12,315] [pool-1-thread-12] Initializing /data/qa-11011/M-flow10001.avi:
[testng] [2024-05-28 02:01:12,559] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-05-28 02:01:12,622] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi:
[testng] [2024-05-28 02:01:12,924] [pool-1-thread-2] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2024-05-28 02:01:13,909] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2024-05-28 02:01:14,039] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-05-28 02:01:14,065] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-05-28 02:01:14,087] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] [2024-05-28 02:01:14,117] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] [2024-05-28 02:01:14,299] [pool-1-thread-7] Initializing /data/curtis/mri-stack-bf.avi:
[testng] [2024-05-28 02:01:14,465] [pool-1-thread-8] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-05-28 02:01:14,546] [pool-1-thread-4] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-05-28 02:01:14,652] [pool-1-thread-7] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2024-05-28 02:01:14,792] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-05-28 02:01:14,959] [pool-1-thread-1] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2024-05-28 02:01:14,969] [pool-1-thread-4] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 20 seconds
Finished: SUCCESS