Started by upstream project "BIOFORMATS-test-repo" build number 77
originally caused by:
Started by upstream project "Trigger" build number 85
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9917582694084599347.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11721_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:08:12,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:08:12,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:08:12,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:08:12,481 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:08:12,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:08:12,482 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:08:12,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:08:12,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:08:12,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:08:12,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:08:12,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:08:12,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:08:12,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:08:12,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:08:12,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:08:12,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:08:12,767 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:08:12,767 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:08:12,768 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:08:12,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:08:12,769 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:08:12,770 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:08:12,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-28 02:08:12,781] [main] java.version = 11.0.16
[testng] 02:08:12,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:08:12,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:12,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-28_02-08-12.log]
[testng] 02:08:12,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-05-28 02:08:12,842] [main] testng.directory = /data
[testng] [2024-05-28 02:08:12,843] [main] testng.configDirectory = /config
[testng] [2024-05-28 02:08:12,861] [main] testng.multiplier = 1.0
[testng] [2024-05-28 02:08:12,863] [main] testng.in-memory = false
[testng] [2024-05-28 02:08:12,864] [main] testng.allow-missing = false
[testng] [2024-05-28 02:08:12,864] [main] user.language = en
[testng] [2024-05-28 02:08:12,864] [main] user.country = ${user.country}
[testng] [2024-05-28 02:08:12,864] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-28 02:08:23,514] [main] ----------------------------------------
[testng] [2024-05-28 02:08:23,515] [main] Total files: 2539
[testng] [2024-05-28 02:08:23,515] [main] Scan time: 10.649 s (4 ms/file)
[testng] [2024-05-28 02:08:23,516] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-28 02:08:25,574] [pool-1-thread-1] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB:
[testng] 02:08:25,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:08:25,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-28_02-08-25.log]
[testng] 02:08:25,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f41e387 - End of configuration.
[testng] [2024-05-28 02:08:25,617] [pool-1-thread-12] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB:
[testng] 02:08:25,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:08:25,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-28_02-08-25.log]
[testng] 02:08:25,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604f1ea4 - End of configuration.
[testng] [2024-05-28 02:08:25,646] [pool-1-thread-11] Initializing /data/omar/FB03f00o1.C01:
[testng] 02:08:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:08:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-28_02-08-25.log]
[testng] 02:08:25,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@502510b3 - End of configuration.
[testng] [2024-05-28 02:08:25,668] [pool-1-thread-10] Initializing /data/omar/FB03f00d0.C01:
[testng] 02:08:25,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:08:25,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-28_02-08-25.log]
[testng] 02:08:25,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28299d5b - End of configuration.
[testng] [2024-05-28 02:08:25,723] [pool-1-thread-9] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01:
[testng] 02:08:25,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:08:25,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-28_02-08-25.log]
[testng] 02:08:25,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42a40484 - End of configuration.
[testng] [2024-05-28 02:08:25,745] [pool-1-thread-8] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01:
[testng] 02:08:25,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:08:25,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-28_02-08-25.log]
[testng] 02:08:25,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b26946 - End of configuration.
[testng] [2024-05-28 02:08:25,940] [pool-1-thread-7] Initializing /data/omar/FB03f00d1.C01:
[testng] 02:08:25,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:08:25,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-28_02-08-25.log]
[testng] 02:08:25,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cd1fe70 - End of configuration.
[testng] [2024-05-28 02:08:26,002] [pool-1-thread-6] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01:
[testng] 02:08:26,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:08:26,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-28_02-08-26.log]
[testng] 02:08:26,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ea61b1 - End of configuration.
[testng] [2024-05-28 02:08:26,065] [pool-1-thread-5] Initializing /data/samples/different-field-count/plate_B03f00d0.C01:
[testng] 02:08:26,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:08:26,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-28_02-08-26.log]
[testng] 02:08:26,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d415ad8 - End of configuration.
[testng] [2024-05-28 02:08:26,109] [pool-1-thread-4] Initializing /data/omar/FB03f03o2.DIB:
[testng] 02:08:26,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:08:26,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-28_02-08-26.log]
[testng] 02:08:26,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b95d44 - End of configuration.
[testng] [2024-05-28 02:08:26,155] [pool-1-thread-3] Initializing /data/samples/plate-size/plate_B03f00d0.C01:
[testng] 02:08:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:08:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-28_02-08-26.log]
[testng] 02:08:26,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a1ca - End of configuration.
[testng] [2024-05-28 02:08:26,215] [pool-1-thread-2] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB:
[testng] 02:08:26,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:08:26,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-28_02-08-26.log]
[testng] 02:08:26,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678cffd9 - End of configuration.
[testng] [2024-05-28 02:08:28,444] [pool-1-thread-1] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01:
[testng] [2024-05-28 02:08:28,594] [pool-1-thread-12] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01:
[testng] [2024-05-28 02:08:28,714] [pool-1-thread-10] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01:
[testng] [2024-05-28 02:08:28,735] [pool-1-thread-6] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01:
[testng] [2024-05-28 02:08:28,787] [pool-1-thread-7] Initializing /data/omar/FB03f00o2.C01:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 19 seconds
Finished: SUCCESS