Started by upstream project "BIOFORMATS-test-repo" build number 78
originally caused by:
Started by upstream project "Trigger" build number 86
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins991210254954968036.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11832_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:29:51,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:29:51,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:29:51,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:51,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:51,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:29:51,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:29:51,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:29:51,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:51,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:51,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:29:51,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:29:51,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:29:51,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:29:51,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:29:51,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:29:51,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:29:51,404 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:29:51,404 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:29:51,404 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:29:51,404 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:29:51,404 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:29:51,405 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:29:51,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-29 01:29:51,415] [main] java.version = 17.0.2
[testng] 01:29:51,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:29:51,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:51,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-29_01-29-51.log]
[testng] 01:29:51,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-29 01:29:51,467] [main] testng.directory = /data
[testng] [2024-05-29 01:29:51,467] [main] testng.configDirectory = /config
[testng] [2024-05-29 01:29:51,477] [main] testng.multiplier = 1.0
[testng] [2024-05-29 01:29:51,477] [main] testng.in-memory = false
[testng] [2024-05-29 01:29:51,478] [main] testng.allow-missing = false
[testng] [2024-05-29 01:29:51,478] [main] user.language = en
[testng] [2024-05-29 01:29:51,478] [main] user.country = ${user.country}
[testng] [2024-05-29 01:29:51,478] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-29 01:29:51,864] [main] ----------------------------------------
[testng] [2024-05-29 01:29:51,864] [main] Total files: 25
[testng] [2024-05-29 01:29:51,864] [main] Scan time: 0.386 s (15 ms/file)
[testng] [2024-05-29 01:29:51,864] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-29 01:29:53,365] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:29:53,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:29:53,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-29_01-29-53.log]
[testng] 01:29:53,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62318920 - End of configuration.
[testng] [2024-05-29 01:29:53,428] [pool-1-thread-12] Initializing /data/misc/planet.pict:
[testng] 01:29:53,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:29:53,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-29_01-29-53.log]
[testng] 01:29:53,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73fe3107 - End of configuration.
[testng] [2024-05-29 01:29:53,475] [pool-1-thread-11] Initializing /data/jqd/32bit.pict:
[testng] 01:29:53,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:29:53,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-29_01-29-53.log]
[testng] 01:29:53,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753f39c1 - End of configuration.
[testng] [2024-05-29 01:29:53,515] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT:
[testng] 01:29:53,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:29:53,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-29_01-29-53.log]
[testng] 01:29:53,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec4cef8 - End of configuration.
[testng] [2024-05-29 01:29:53,537] [pool-1-thread-9] Initializing /data/misc/planet.png:
[testng] 01:29:53,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:29:53,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-29_01-29-53.log]
[testng] 01:29:53,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d1a9844 - End of configuration.
[testng] [2024-05-29 01:29:53,544] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:29:53,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:29:53,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-29_01-29-53.log]
[testng] 01:29:53,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration.
[testng] [2024-05-29 01:29:53,555] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:29:53,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:29:53,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-29_01-29-53.log]
[testng] 01:29:53,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ebbee6 - End of configuration.
[testng] [2024-05-29 01:29:53,592] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:29:53,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:53,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-29_01-29-53.log]
[testng] 01:29:53,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc6800 - End of configuration.
[testng] [2024-05-29 01:29:53,602] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] 01:29:53,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:53,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-29_01-29-53.log]
[testng] 01:29:53,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration.
[testng] [2024-05-29 01:29:53,612] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:29:53,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:53,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-29_01-29-53.log]
[testng] 01:29:53,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28197cb6 - End of configuration.
[testng] [2024-05-29 01:29:53,796] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:29:53,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:53,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-29_01-29-53.log]
[testng] 01:29:53,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ec8574 - End of configuration.
[testng] [2024-05-29 01:29:53,823] [pool-1-thread-2] Initializing /data/misc/planet2.pict:
[testng] 01:29:53,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:53,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:53,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-29_01-29-53.log]
[testng] 01:29:53,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a307ee3 - End of configuration.
[testng] [2024-05-29 01:29:55,239] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict:
[testng] [2024-05-29 01:29:55,250] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-05-29 01:29:55,270] [pool-1-thread-6] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-05-29 01:29:55,290] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-05-29 01:29:55,520] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-05-29 01:29:55,579] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-05-29 01:29:55,763] [pool-1-thread-9] Initializing /data/misc/swlogo.pict:
[testng] [2024-05-29 01:29:55,783] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-05-29 01:29:55,851] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-05-29 01:29:55,978] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-05-29 01:29:55,991] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-05-29 01:29:56,078] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-05-29 01:29:56,170] [pool-1-thread-8] Initializing /data/jqd/mire32.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS