Started by upstream project "BIOFORMATS-test-repo" build number 78
originally caused by:
Started by upstream project "Trigger" build number 86
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18354810130302040354.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11876_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:04:41,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:04:41,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:04:41,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:41,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:41,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:04:41,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:04:41,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:04:41,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:41,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:41,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:04:41,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:04:41,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:04:42,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:04:42,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:04:42,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:04:42,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:04:42,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:04:42,177 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:04:42,177 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:04:42,178 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:04:42,178 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:04:42,178 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:04:42,179 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-29 02:04:42,188] [main] java.version = 17.0.2
[testng] 02:04:42,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:04:42,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:42,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-29_02-04-42.log]
[testng] 02:04:42,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-05-29 02:04:42,238] [main] testng.directory = /data
[testng] [2024-05-29 02:04:42,238] [main] testng.configDirectory = /config
[testng] [2024-05-29 02:04:42,247] [main] testng.multiplier = 1.0
[testng] [2024-05-29 02:04:42,248] [main] testng.in-memory = false
[testng] [2024-05-29 02:04:42,248] [main] testng.allow-missing = false
[testng] [2024-05-29 02:04:42,248] [main] user.language = en
[testng] [2024-05-29 02:04:42,248] [main] user.country = ${user.country}
[testng] [2024-05-29 02:04:42,248] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-29 02:04:42,605] [main] ----------------------------------------
[testng] [2024-05-29 02:04:42,606] [main] Total files: 19
[testng] [2024-05-29 02:04:42,606] [main] Scan time: 0.357 s (18 ms/file)
[testng] [2024-05-29 02:04:42,606] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-29 02:04:44,430] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:04:44,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:04:44,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-29_02-04-44.log]
[testng] 02:04:44,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33983b97 - End of configuration.
[testng] [2024-05-29 02:04:44,479] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:04:44,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:04:44,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-29_02-04-44.log]
[testng] 02:04:44,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f3c44a7 - End of configuration.
[testng] [2024-05-29 02:04:44,563] [pool-1-thread-11] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:04:44,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:04:44,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-29_02-04-44.log]
[testng] 02:04:44,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63c555c3 - End of configuration.
[testng] [2024-05-29 02:04:44,593] [pool-1-thread-10] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 02:04:44,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:04:44,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-29_02-04-44.log]
[testng] 02:04:44,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5832fb - End of configuration.
[testng] [2024-05-29 02:04:44,623] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 02:04:44,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:04:44,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-29_02-04-44.log]
[testng] 02:04:44,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2059693a - End of configuration.
[testng] [2024-05-29 02:04:44,655] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 02:04:44,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:04:44,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-29_02-04-44.log]
[testng] 02:04:44,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2345135f - End of configuration.
[testng] [2024-05-29 02:04:44,722] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] 02:04:44,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:04:44,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-29_02-04-44.log]
[testng] 02:04:44,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52813274 - End of configuration.
[testng] [2024-05-29 02:04:44,759] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:04:44,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:04:44,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-29_02-04-44.log]
[testng] 02:04:44,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346d6747 - End of configuration.
[testng] [2024-05-29 02:04:44,805] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:04:44,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:04:44,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-29_02-04-44.log]
[testng] 02:04:44,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ebea8a2 - End of configuration.
[testng] [2024-05-29 02:04:44,855] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:04:44,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:04:44,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-29_02-04-44.log]
[testng] 02:04:44,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@269aac17 - End of configuration.
[testng] [2024-05-29 02:04:44,908] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng] 02:04:44,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:04:44,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-29_02-04-44.log]
[testng] 02:04:44,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4288c468 - End of configuration.
[testng] [2024-05-29 02:04:44,975] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:04:44,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:04:44,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:44,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-29_02-04-44.log]
[testng] 02:04:44,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c855e1 - End of configuration.
[testng] [2024-05-29 02:04:50,897] [pool-1-thread-9] Initializing /data/samples/100R PICT0001.MRW:
[testng] [2024-05-29 02:04:50,943] [pool-1-thread-10] Initializing /data/samples/200R PICT0002.MRW:
[testng] [2024-05-29 02:04:50,964] [pool-1-thread-8] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2024-05-29 02:04:50,991] [pool-1-thread-11] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-05-29 02:04:51,019] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] [2024-05-29 02:04:51,047] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-05-29 02:04:51,074] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS