Started by upstream project "BIOFORMATS-test-repo" build number 78 originally caused by: Started by upstream project "Trigger" build number 86 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4025364189116266746.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11936_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:41:09,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:41:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:41:09,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:41:09,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:41:09,601 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:41:09,602 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:41:09,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:41:09,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:41:09,602 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:41:09,603 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:41:09,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 430 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-29 02:41:09,612] [main] java.version = 17.0.2 [testng] 02:41:09,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:09,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:09,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-29_02-41-09.log] [testng] 02:41:09,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-29 02:41:09,822] [main] testng.directory = /data [testng] [2024-05-29 02:41:09,823] [main] testng.configDirectory = /config [testng] [2024-05-29 02:41:09,938] [main] testng.multiplier = 1.0 [testng] [2024-05-29 02:41:09,939] [main] testng.in-memory = false [testng] [2024-05-29 02:41:09,939] [main] testng.allow-missing = false [testng] [2024-05-29 02:41:09,940] [main] user.language = en [testng] [2024-05-29 02:41:09,940] [main] user.country = ${user.country} [testng] [2024-05-29 02:41:09,940] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-29 02:41:10,957] [main] ---------------------------------------- [testng] [2024-05-29 02:41:10,957] [main] Total files: 17 [testng] [2024-05-29 02:41:10,957] [main] Scan time: 1.017 s (59 ms/file) [testng] [2024-05-29 02:41:10,957] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-29 02:41:12,015] [pool-1-thread-1] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 02:41:12,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:41:12,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-29_02-41-12.log] [testng] 02:41:12,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b603387 - End of configuration. [testng] [2024-05-29 02:41:12,043] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 02:41:12,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:41:12,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-29_02-41-12.log] [testng] 02:41:12,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a27df4 - End of configuration. [testng] [2024-05-29 02:41:12,090] [pool-1-thread-11] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:41:12,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:41:12,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-29_02-41-12.log] [testng] 02:41:12,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4be8538 - End of configuration. [testng] [2024-05-29 02:41:12,123] [pool-1-thread-10] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 02:41:12,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:41:12,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-29_02-41-12.log] [testng] 02:41:12,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e6b7758 - End of configuration. [testng] [2024-05-29 02:41:12,144] [pool-1-thread-9] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 02:41:12,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:41:12,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-29_02-41-12.log] [testng] 02:41:12,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57749fab - End of configuration. [testng] [2024-05-29 02:41:12,173] [pool-1-thread-8] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:41:12,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:41:12,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-29_02-41-12.log] [testng] 02:41:12,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702446ac - End of configuration. [testng] [2024-05-29 02:41:12,192] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 02:41:12,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:41:12,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-29_02-41-12.log] [testng] 02:41:12,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217ceeab - End of configuration. [testng] [2024-05-29 02:41:12,210] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:41:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:41:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-29_02-41-12.log] [testng] 02:41:12,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cafe60 - End of configuration. [testng] [2024-05-29 02:41:12,230] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 02:41:12,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:41:12,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-29_02-41-12.log] [testng] 02:41:12,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f735ca9 - End of configuration. [testng] [2024-05-29 02:41:12,254] [pool-1-thread-4] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 02:41:12,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:41:12,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-29_02-41-12.log] [testng] 02:41:12,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3740e0c9 - End of configuration. [testng] [2024-05-29 02:41:12,268] [pool-1-thread-3] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:41:12,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:41:12,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-29_02-41-12.log] [testng] 02:41:12,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@244e0e70 - End of configuration. [testng] [2024-05-29 02:41:12,283] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:41:12,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:41:12,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:12,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-29_02-41-12.log] [testng] 02:41:12,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de3c38a - End of configuration. [testng] [2024-05-29 02:41:14,049] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [2024-05-29 02:41:14,058] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-05-29 02:41:14,097] [pool-1-thread-1] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-05-29 02:41:14,117] [pool-1-thread-3] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] [2024-05-29 02:41:14,130] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS