Started by upstream project "BIOFORMATS-test-repo" build number 79
originally caused by:
Started by upstream project "Trigger" build number 87
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14145221818638498961.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_11970_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:23:30,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:23:30,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:23:30,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:30,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:30,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:23:30,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:23:30,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:23:30,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:30,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:30,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:23:30,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:23:30,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:23:30,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:23:30,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:23:30,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:23:30,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:23:30,665 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:23:30,665 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:23:30,666 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:23:30,666 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:23:30,666 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:23:30,667 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:23:30,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-30 01:23:30,677] [main] java.version = 21
[testng] 01:23:30,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:23:30,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:30,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-30_01-23-30.log]
[testng] 01:23:30,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-05-30 01:23:30,732] [main] testng.directory = /data
[testng] [2024-05-30 01:23:30,732] [main] testng.configDirectory = /config
[testng] [2024-05-30 01:23:30,741] [main] testng.multiplier = 1.0
[testng] [2024-05-30 01:23:30,742] [main] testng.in-memory = false
[testng] [2024-05-30 01:23:30,742] [main] testng.allow-missing = false
[testng] [2024-05-30 01:23:30,743] [main] user.language = en
[testng] [2024-05-30 01:23:30,743] [main] user.country = ${user.country}
[testng] [2024-05-30 01:23:30,743] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-30 01:23:31,212] [main] ----------------------------------------
[testng] [2024-05-30 01:23:31,212] [main] Total files: 31
[testng] [2024-05-30 01:23:31,212] [main] Scan time: 0.469 s (15 ms/file)
[testng] [2024-05-30 01:23:31,212] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-30 01:23:32,959] [pool-1-thread-1] Initializing /data/curtis/image2.bmp:
[testng] 01:23:32,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:23:32,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:32,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-30_01-23-32.log]
[testng] 01:23:32,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c25908 - End of configuration.
[testng] [2024-05-30 01:23:32,984] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] 01:23:32,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:23:32,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:32,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-30_01-23-32.log]
[testng] 01:23:32,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1ef9b0 - End of configuration.
[testng] [2024-05-30 01:23:32,997] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] 01:23:32,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:23:32,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:32,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-30_01-23-32.log]
[testng] 01:23:32,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8e8eb5 - End of configuration.
[testng] [2024-05-30 01:23:33,036] [pool-1-thread-10] Initializing /data/curtis/image3.bmp:
[testng] 01:23:33,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:23:33,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-30_01-23-33.log]
[testng] 01:23:33,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb46752 - End of configuration.
[testng] [2024-05-30 01:23:33,044] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp:
[testng] 01:23:33,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:23:33,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-30_01-23-33.log]
[testng] 01:23:33,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed0a8d4 - End of configuration.
[testng] [2024-05-30 01:23:33,058] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] 01:23:33,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:23:33,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-30_01-23-33.log]
[testng] 01:23:33,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b15c26 - End of configuration.
[testng] [2024-05-30 01:23:33,071] [pool-1-thread-7] Initializing /data/frank/cell_mask_error.bmp:
[testng] 01:23:33,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:23:33,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-30_01-23-33.log]
[testng] 01:23:33,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bf14b73 - End of configuration.
[testng] [2024-05-30 01:23:33,081] [pool-1-thread-6] Initializing /data/brian/images/raw_a.bmp:
[testng] 01:23:33,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:23:33,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-30_01-23-33.log]
[testng] 01:23:33,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f4606a3 - End of configuration.
[testng] [2024-05-30 01:23:33,091] [pool-1-thread-5] Initializing /data/stephane/holo0908.bmp:
[testng] 01:23:33,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:23:33,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-30_01-23-33.log]
[testng] 01:23:33,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ceece9 - End of configuration.
[testng] [2024-05-30 01:23:33,104] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] 01:23:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:23:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-30_01-23-33.log]
[testng] 01:23:33,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e2cb2a - End of configuration.
[testng] [2024-05-30 01:23:33,115] [pool-1-thread-3] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 01:23:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:23:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-30_01-23-33.log]
[testng] 01:23:33,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bb97f3e - End of configuration.
[testng] [2024-05-30 01:23:33,125] [pool-1-thread-2] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] 01:23:33,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:23:33,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:33,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-30_01-23-33.log]
[testng] 01:23:33,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8bea6f - End of configuration.
[testng] [2024-05-30 01:23:34,629] [pool-1-thread-10] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-05-30 01:23:34,637] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] [2024-05-30 01:23:34,646] [pool-1-thread-3] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng] [2024-05-30 01:23:34,659] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] [2024-05-30 01:23:34,957] [pool-1-thread-2] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] [2024-05-30 01:23:34,967] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-05-30 01:23:34,974] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2024-05-30 01:23:34,982] [pool-1-thread-7] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] [2024-05-30 01:23:34,993] [pool-1-thread-12] Initializing /data/curtis/image4.bmp:
[testng] [2024-05-30 01:23:35,054] [pool-1-thread-11] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] [2024-05-30 01:23:35,238] [pool-1-thread-5] Initializing /data/curtis/image5.bmp:
[testng] [2024-05-30 01:23:35,246] [pool-1-thread-10] Initializing /data/ticket-12971/foo.bmp:
[testng] [2024-05-30 01:23:35,342] [pool-1-thread-12] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] [2024-05-30 01:23:35,354] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2024-05-30 01:23:35,361] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp:
[testng] [2024-05-30 01:23:35,432] [pool-1-thread-3] Initializing /data/big-images/8kx8k.bmp:
[testng] [2024-05-30 01:23:35,482] [pool-1-thread-10] Initializing /data/curtis/image1.bmp:
[testng] [2024-05-30 01:23:35,499] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] [2024-05-30 01:23:35,506] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS