Started by upstream project "BIOFORMATS-test-repo" build number 79
originally caused by:
Started by upstream project "Trigger" build number 87
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9459204191346148326.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12101_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:43:19,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:43:19,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 02:43:19,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:19,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:19,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:43:19,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:43:19,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:43:19,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:19,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:19,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:43:19,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:43:19,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:43:19,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:19,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:19,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:19,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:19,847 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:19,847 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:19,847 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:19,848 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:19,848 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 02:43:19,849 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 02:43:19,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-30 02:43:19,857] [main] java.version = 21
[testng] 02:43:19,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:19,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:19,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-30_02-43-19.log]
[testng] 02:43:19,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-05-30 02:43:19,902] [main] testng.directory = /data
[testng] [2024-05-30 02:43:19,903] [main] testng.configDirectory = /config
[testng] [2024-05-30 02:43:19,911] [main] testng.multiplier = 1.0
[testng] [2024-05-30 02:43:19,911] [main] testng.in-memory = false
[testng] [2024-05-30 02:43:19,911] [main] testng.allow-missing = false
[testng] [2024-05-30 02:43:19,912] [main] user.language = en
[testng] [2024-05-30 02:43:19,912] [main] user.country = ${user.country}
[testng] [2024-05-30 02:43:19,912] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-05-30 02:43:21,827] [main] ----------------------------------------
[testng] [2024-05-30 02:43:21,827] [main] Total files: 31
[testng] [2024-05-30 02:43:21,827] [main] Scan time: 1.915 s (61 ms/file)
[testng] [2024-05-30 02:43:21,828] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-30 02:43:24,671] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx:
[testng] 02:43:24,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:24,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-30_02-43-24.log]
[testng] 02:43:24,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773b8390 - End of configuration.
[testng] [2024-05-30 02:43:24,730] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2:
[testng] 02:43:24,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:43:24,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-30_02-43-24.log]
[testng] 02:43:24,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d31e599 - End of configuration.
[testng] [2024-05-30 02:43:24,831] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] 02:43:24,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:24,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-30_02-43-24.log]
[testng] 02:43:24,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124acfe5 - End of configuration.
[testng] [2024-05-30 02:43:24,859] [pool-1-thread-10] Initializing /data/david/multichannel-2d test.jp2:
[testng] 02:43:24,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:24,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-30_02-43-24.log]
[testng] 02:43:24,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23733f99 - End of configuration.
[testng] [2024-05-30 02:43:24,886] [pool-1-thread-9] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] 02:43:24,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:24,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-30_02-43-24.log]
[testng] 02:43:24,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403d6e6a - End of configuration.
[testng] [2024-05-30 02:43:24,936] [pool-1-thread-8] Initializing /data/kraig/head.jp2:
[testng] 02:43:24,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:24,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-30_02-43-24.log]
[testng] 02:43:24,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41bf906d - End of configuration.
[testng] [2024-05-30 02:43:24,990] [pool-1-thread-7] Initializing /data/venu/Multichannel 3.jp2:
[testng] 02:43:24,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:24,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:24,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-30_02-43-24.log]
[testng] 02:43:24,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d4538d5 - End of configuration.
[testng] [2024-05-30 02:43:25,115] [pool-1-thread-6] Initializing /data/vikram/Captured 3.jp2:
[testng] 02:43:25,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:25,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:25,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-30_02-43-25.log]
[testng] 02:43:25,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea83688 - End of configuration.
[testng] [2024-05-30 02:43:25,155] [pool-1-thread-5] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] 02:43:25,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:25,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:25,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-30_02-43-25.log]
[testng] 02:43:25,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e112d15 - End of configuration.
[testng] [2024-05-30 02:43:25,531] [pool-1-thread-4] Initializing /data/aryeh/flour 12.jp2:
[testng] 02:43:25,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:25,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:25,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-30_02-43-25.log]
[testng] 02:43:25,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d5bce3 - End of configuration.
[testng] [2024-05-30 02:43:25,570] [pool-1-thread-3] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] 02:43:25,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:25,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:25,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-30_02-43-25.log]
[testng] 02:43:25,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3eb071 - End of configuration.
[testng] [2024-05-30 02:43:25,646] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf:
[testng] 02:43:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:25,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-30_02-43-25.log]
[testng] 02:43:25,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@605135c4 - End of configuration.
[testng] [2024-05-30 02:43:27,446] [pool-1-thread-11] Initializing /data/big-images/2kx2k.jpf:
[testng] [2024-05-30 02:43:27,458] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2:
[testng] [2024-05-30 02:43:27,470] [pool-1-thread-6] Initializing /data/frans/flower.jp2:
[testng] [2024-05-30 02:43:27,549] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jbig:
[testng] [2024-05-30 02:43:27,994] [pool-1-thread-4] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] [2024-05-30 02:43:28,260] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng] [2024-05-30 02:43:28,607] [pool-1-thread-12] Initializing /data/vikram/Captured 1.jp2:
[testng] [2024-05-30 02:43:29,388] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf:
[testng] [2024-05-30 02:43:32,242] [pool-1-thread-9] Initializing /data/misc/clown-rgb.jpc:
[testng] [2024-05-30 02:43:32,893] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg:
[testng] [2024-05-30 02:43:33,012] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] [2024-05-30 02:43:33,843] [pool-1-thread-1] Initializing /data/vikram/Captured 5.jp2:
[testng] [2024-05-30 02:43:34,245] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2:
[testng] [2024-05-30 02:43:34,442] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] [2024-05-30 02:43:35,266] [pool-1-thread-1] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] [2024-05-30 02:43:38,104] [pool-1-thread-7] Initializing /data/vikram/Captured 4.jp2:
[testng] [2024-05-30 02:43:38,521] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2024-05-30 02:43:39,279] [pool-1-thread-7] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 17 seconds
Finished: SUCCESS