Started by upstream project "BIOFORMATS-test-repo" build number 80
originally caused by:
Started by upstream project "Trigger" build number 88
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4202599967008730577.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12147_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:28:43,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:28:43,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:28:43,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:43,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:43,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:28:43,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:28:43,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:28:43,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:43,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:43,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:28:43,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:28:43,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:28:43,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:28:43,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:28:43,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:28:43,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:28:43,266 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:28:43,266 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:28:43,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:28:43,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:28:43,267 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:28:43,268 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:28:43,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-31 01:28:43,278] [main] java.version = 1.8.0_342
[testng] 01:28:43,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:28:43,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:43,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_01-28-43.log]
[testng] 01:28:43,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-31 01:28:43,329] [main] testng.directory = /data
[testng] [2024-05-31 01:28:43,329] [main] testng.configDirectory = /config
[testng] [2024-05-31 01:28:43,341] [main] testng.multiplier = 1.0
[testng] [2024-05-31 01:28:43,341] [main] testng.in-memory = false
[testng] [2024-05-31 01:28:43,341] [main] testng.allow-missing = false
[testng] [2024-05-31 01:28:43,341] [main] user.language = en
[testng] [2024-05-31 01:28:43,341] [main] user.country = ${user.country}
[testng] [2024-05-31 01:28:43,342] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-31 01:28:43,746] [main] ----------------------------------------
[testng] [2024-05-31 01:28:43,746] [main] Total files: 21
[testng] [2024-05-31 01:28:43,746] [main] Scan time: 0.404 s (19 ms/file)
[testng] [2024-05-31 01:28:43,747] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-31 01:28:44,664] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA:
[testng] 01:28:44,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:28:44,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_01-28-44.log]
[testng] 01:28:44,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d581659 - End of configuration.
[testng] [2024-05-31 01:28:44,683] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA:
[testng] 01:28:44,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:28:44,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_01-28-44.log]
[testng] 01:28:44,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff2078 - End of configuration.
[testng] [2024-05-31 01:28:44,734] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA:
[testng] 01:28:44,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:28:44,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_01-28-44.log]
[testng] 01:28:44,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5625a986 - End of configuration.
[testng] [2024-05-31 01:28:44,745] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA:
[testng] 01:28:44,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:44,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_01-28-44.log]
[testng] 01:28:44,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6322042a - End of configuration.
[testng] [2024-05-31 01:28:44,756] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:28:44,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:44,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_01-28-44.log]
[testng] 01:28:44,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d95d70 - End of configuration.
[testng] [2024-05-31 01:28:44,770] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA:
[testng] 01:28:44,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:44,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_01-28-44.log]
[testng] 01:28:44,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3238418f - End of configuration.
[testng] [2024-05-31 01:28:44,779] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA:
[testng] 01:28:44,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:44,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_01-28-44.log]
[testng] 01:28:44,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f9646 - End of configuration.
[testng] [2024-05-31 01:28:44,790] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 01:28:44,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:28:44,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_01-28-44.log]
[testng] 01:28:44,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bf3420e - End of configuration.
[testng] [2024-05-31 01:28:44,798] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:28:44,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:28:44,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_01-28-44.log]
[testng] 01:28:44,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191961cb - End of configuration.
[testng] [2024-05-31 01:28:44,806] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:28:44,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:28:44,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_01-28-44.log]
[testng] 01:28:44,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7648c1a7 - End of configuration.
[testng] [2024-05-31 01:28:44,814] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA:
[testng] 01:28:44,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:28:44,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_01-28-44.log]
[testng] 01:28:44,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2646bfd6 - End of configuration.
[testng] [2024-05-31 01:28:44,824] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA:
[testng] 01:28:44,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:28:44,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_01-28-44.log]
[testng] 01:28:44,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a1729e - End of configuration.
[testng] [2024-05-31 01:28:46,339] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-05-31 01:28:46,348] [pool-1-thread-1] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-05-31 01:28:46,363] [pool-1-thread-2] Initializing /data/samples/CCM8.TGA:
[testng] [2024-05-31 01:28:46,369] [pool-1-thread-6] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-05-31 01:28:46,375] [pool-1-thread-8] Initializing /data/samples/UTC32.TGA:
[testng] [2024-05-31 01:28:46,381] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-05-31 01:28:46,388] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA:
[testng] [2024-05-31 01:28:46,396] [pool-1-thread-3] Initializing /data/samples/UTC24.TGA:
[testng] [2024-05-31 01:28:46,404] [pool-1-thread-7] Initializing /data/samples/FLAG_B16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 seconds
Finished: SUCCESS