Started by upstream project "BIOFORMATS-test-repo" build number 80
originally caused by:
Started by upstream project "Trigger" build number 88
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8976587862122854497.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12190_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:53:50,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:53:50,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:53:50,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:53:50,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:53:50,691 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:53:50,692 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:53:50,692 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:53:50,692 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:53:50,692 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:53:50,693 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:53:50,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 452 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-31 01:53:50,705] [main] java.version = 1.8.0_342
[testng] 01:53:50,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:53:50,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:50,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_01-53-50.log]
[testng] 01:53:50,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-31 01:53:50,793] [main] testng.directory = /data
[testng] [2024-05-31 01:53:50,793] [main] testng.configDirectory = /config
[testng] [2024-05-31 01:53:50,808] [main] testng.multiplier = 1.0
[testng] [2024-05-31 01:53:50,808] [main] testng.in-memory = false
[testng] [2024-05-31 01:53:50,808] [main] testng.allow-missing = false
[testng] [2024-05-31 01:53:50,809] [main] user.language = en
[testng] [2024-05-31 01:53:50,809] [main] user.country = ${user.country}
[testng] [2024-05-31 01:53:50,809] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-31 01:53:51,861] [main] ----------------------------------------
[testng] [2024-05-31 01:53:51,861] [main] Total files: 16
[testng] [2024-05-31 01:53:51,861] [main] Scan time: 1.052 s (65 ms/file)
[testng] [2024-05-31 01:53:51,861] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-31 01:54:02,159] [pool-1-thread-1] Initializing /data/samples/5400.afi:
[testng] 01:54:02,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:54:02,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_01-54-02.log]
[testng] 01:54:02,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23cbda73 - End of configuration.
[testng] [2024-05-31 01:54:02,239] [pool-1-thread-12] Initializing /data/samples/5351.afi:
[testng] 01:54:02,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:54:02,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_01-54-02.log]
[testng] 01:54:02,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b90401b - End of configuration.
[testng] [2024-05-31 01:54:02,381] [pool-1-thread-11] Initializing /data/samples/5306.afi:
[testng] 01:54:02,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:54:02,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_01-54-02.log]
[testng] 01:54:02,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f39bd9c - End of configuration.
[testng] [2024-05-31 01:54:02,445] [pool-1-thread-10] Initializing /data/samples/5383.afi:
[testng] 01:54:02,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:54:02,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_01-54-02.log]
[testng] 01:54:02,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee86dd8 - End of configuration.
[testng] [2024-05-31 01:54:02,517] [pool-1-thread-9] Initializing /data/samples/5365.afi:
[testng] 01:54:02,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:54:02,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_01-54-02.log]
[testng] 01:54:02,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b20e9ec - End of configuration.
[testng] [2024-05-31 01:54:02,609] [pool-1-thread-8] Initializing /data/samples/5440.afi:
[testng] 01:54:02,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:54:02,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_01-54-02.log]
[testng] 01:54:02,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ecbe74d - End of configuration.
[testng] [2024-05-31 01:54:02,677] [pool-1-thread-7] Initializing /data/samples/5446.afi:
[testng] 01:54:02,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:54:02,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_01-54-02.log]
[testng] 01:54:02,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@679c3a06 - End of configuration.
[testng] [2024-05-31 01:54:02,838] [pool-1-thread-6] Initializing /data/samples/5339.afi:
[testng] 01:54:02,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:54:02,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_01-54-02.log]
[testng] 01:54:02,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be9f71a - End of configuration.
[testng] [2024-05-31 01:54:02,897] [pool-1-thread-5] Initializing /data/samples/5387.afi:
[testng] 01:54:02,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:54:02,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:02,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_01-54-02.log]
[testng] 01:54:02,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@754d9636 - End of configuration.
[testng] [2024-05-31 01:54:03,066] [pool-1-thread-4] Initializing /data/samples/5407.afi:
[testng] 01:54:03,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:54:03,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:03,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_01-54-03.log]
[testng] 01:54:03,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a984c8b - End of configuration.
[testng] [2024-05-31 01:54:03,146] [pool-1-thread-3] Initializing /data/samples/5347.afi:
[testng] 01:54:03,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:54:03,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:03,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_01-54-03.log]
[testng] 01:54:03,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340a1b05 - End of configuration.
[testng] [2024-05-31 01:54:03,221] [pool-1-thread-2] Initializing /data/samples/5358.afi:
[testng] 01:54:03,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:54:03,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:54:03,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_01-54-03.log]
[testng] 01:54:03,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d31047 - End of configuration.
[testng] [2024-05-31 01:54:52,936] [pool-1-thread-1] Initializing /data/samples/5414.afi:
[testng] [2024-05-31 01:54:53,575] [pool-1-thread-8] Initializing /data/samples/5343.afi:
[testng] [2024-05-31 01:54:53,820] [pool-1-thread-3] Initializing /data/samples/5371.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 53 seconds
Finished: SUCCESS