Started by upstream project "BIOFORMATS-test-repo" build number 80
originally caused by:
Started by upstream project "Trigger" build number 88
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3906349452337407500.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12204_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:13:15,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:13:15,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:13:15,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:15,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:15,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:13:15,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:13:15,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:13:15,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:15,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:15,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:13:15,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:13:15,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:13:15,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:13:15,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:13:15,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:13:15,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:13:15,895 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:13:15,895 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:13:15,895 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:13:15,896 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:13:15,896 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:13:15,896 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:13:15,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 304 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-31 02:13:15,906] [main] java.version = 1.8.0_342
[testng] 02:13:15,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:13:15,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:15,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_02-13-15.log]
[testng] 02:13:15,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-31 02:13:15,958] [main] testng.directory = /data
[testng] [2024-05-31 02:13:15,958] [main] testng.configDirectory = /config
[testng] [2024-05-31 02:13:15,970] [main] testng.multiplier = 1.0
[testng] [2024-05-31 02:13:15,970] [main] testng.in-memory = false
[testng] [2024-05-31 02:13:15,970] [main] testng.allow-missing = false
[testng] [2024-05-31 02:13:15,970] [main] user.language = en
[testng] [2024-05-31 02:13:15,970] [main] user.country = ${user.country}
[testng] [2024-05-31 02:13:15,971] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-31 02:13:16,423] [main] ----------------------------------------
[testng] [2024-05-31 02:13:16,423] [main] Total files: 19
[testng] [2024-05-31 02:13:16,423] [main] Scan time: 0.452 s (23 ms/file)
[testng] [2024-05-31 02:13:16,423] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-31 02:13:17,686] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:13:17,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:13:17,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_02-13-17.log]
[testng] 02:13:17,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9482707 - End of configuration.
[testng] [2024-05-31 02:13:17,722] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:13:17,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:13:17,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_02-13-17.log]
[testng] 02:13:17,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration.
[testng] [2024-05-31 02:13:17,782] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:13:17,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:13:17,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_02-13-17.log]
[testng] 02:13:17,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13a87ae - End of configuration.
[testng] [2024-05-31 02:13:17,805] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 02:13:17,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:13:17,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_02-13-17.log]
[testng] 02:13:17,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f3d9c0 - End of configuration.
[testng] [2024-05-31 02:13:17,832] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:13:17,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:13:17,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_02-13-17.log]
[testng] 02:13:17,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450a18d5 - End of configuration.
[testng] [2024-05-31 02:13:17,855] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:13:17,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:13:17,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_02-13-17.log]
[testng] 02:13:17,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5bbb20 - End of configuration.
[testng] [2024-05-31 02:13:17,960] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:13:17,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:13:17,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_02-13-17.log]
[testng] 02:13:17,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576d430b - End of configuration.
[testng] [2024-05-31 02:13:17,989] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:13:17,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:13:17,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:17,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_02-13-17.log]
[testng] 02:13:17,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ed440f - End of configuration.
[testng] [2024-05-31 02:13:18,015] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 02:13:18,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:13:18,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:18,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_02-13-18.log]
[testng] 02:13:18,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681e74f9 - End of configuration.
[testng] [2024-05-31 02:13:18,036] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:13:18,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:13:18,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:18,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_02-13-18.log]
[testng] 02:13:18,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a5a38 - End of configuration.
[testng] [2024-05-31 02:13:18,060] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 02:13:18,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:13:18,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:18,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_02-13-18.log]
[testng] 02:13:18,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3629b908 - End of configuration.
[testng] [2024-05-31 02:13:18,312] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:13:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:13:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:18,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_02-13-18.log]
[testng] 02:13:18,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485e6c9e - End of configuration.
[testng] [2024-05-31 02:13:26,251] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-05-31 02:13:26,273] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-05-31 02:13:26,292] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-05-31 02:13:26,313] [pool-1-thread-4] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-05-31 02:13:26,340] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-05-31 02:13:26,365] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-05-31 02:13:26,397] [pool-1-thread-1] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS