Started by upstream project "BIOFORMATS-test-repo" build number 80
originally caused by:
Started by upstream project "Trigger" build number 88
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3239051373956083098.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12258_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:45:13,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:45:13,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:45:13,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:13,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:13,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:45:13,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:45:13,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:45:13,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:13,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:13,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:45:13,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:45:13,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:45:13,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:45:13,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:45:13,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:45:13,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:45:13,849 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:45:13,849 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:45:13,849 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:45:13,849 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:45:13,850 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:45:13,850 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:45:13,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-31 02:45:13,860] [main] java.version = 1.8.0_342
[testng] 02:45:13,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:45:13,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:13,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_02-45-13.log]
[testng] 02:45:13,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-31 02:45:13,918] [main] testng.directory = /data
[testng] [2024-05-31 02:45:13,918] [main] testng.configDirectory = /config
[testng] [2024-05-31 02:45:13,933] [main] testng.multiplier = 1.0
[testng] [2024-05-31 02:45:13,934] [main] testng.in-memory = false
[testng] [2024-05-31 02:45:13,934] [main] testng.allow-missing = false
[testng] [2024-05-31 02:45:13,934] [main] user.language = en
[testng] [2024-05-31 02:45:13,934] [main] user.country = ${user.country}
[testng] [2024-05-31 02:45:13,935] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-31 02:45:14,788] [main] ----------------------------------------
[testng] [2024-05-31 02:45:14,788] [main] Total files: 23
[testng] [2024-05-31 02:45:14,789] [main] Scan time: 0.853 s (37 ms/file)
[testng] [2024-05-31 02:45:14,789] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-31 02:45:19,888] [pool-1-thread-1] Initializing /data/public/NIH/filtered_func_data.nii.gz:
[testng] 02:45:19,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:45:19,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:19,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_02-45-19.log]
[testng] 02:45:19,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65dc1606 - End of configuration.
[testng] [2024-05-31 02:45:22,960] [pool-1-thread-12] Initializing /data/public/NIH/minimal.nii:
[testng] 02:45:22,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:45:22,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:22,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_02-45-22.log]
[testng] 02:45:22,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd76a7c - End of configuration.
[testng] [2024-05-31 02:45:22,979] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr:
[testng] 02:45:22,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:45:22,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:22,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_02-45-22.log]
[testng] 02:45:22,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2b7732 - End of configuration.
[testng] [2024-05-31 02:45:22,995] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr:
[testng] 02:45:22,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:45:22,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:22,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_02-45-22.log]
[testng] 02:45:22,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@494cdca3 - End of configuration.
[testng] [2024-05-31 02:45:23,008] [pool-1-thread-9] Initializing /data/qa-17334/volume4d.nii:
[testng] 02:45:23,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:45:23,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_02-45-23.log]
[testng] 02:45:23,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@694174c9 - End of configuration.
[testng] [2024-05-31 02:45:23,030] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz:
[testng] 02:45:23,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:45:23,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_02-45-23.log]
[testng] 02:45:23,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d80dd3 - End of configuration.
[testng] [2024-05-31 02:45:23,226] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz:
[testng] 02:45:23,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:45:23,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_02-45-23.log]
[testng] 02:45:23,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3baa194d - End of configuration.
[testng] [2024-05-31 02:45:23,432] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr:
[testng] 02:45:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:45:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_02-45-23.log]
[testng] 02:45:23,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507af7f8 - End of configuration.
[testng] [2024-05-31 02:45:23,451] [pool-1-thread-5] Initializing /data/public/NIH/filtered_func_data.nii:
[testng] 02:45:23,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:45:23,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_02-45-23.log]
[testng] 02:45:23,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62150b7f - End of configuration.
[testng] [2024-05-31 02:45:23,468] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii:
[testng] 02:45:23,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:45:23,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_02-45-23.log]
[testng] 02:45:23,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f1b97f5 - End of configuration.
[testng] [2024-05-31 02:45:23,484] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr:
[testng] 02:45:23,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:45:23,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_02-45-23.log]
[testng] 02:45:23,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7ac56a - End of configuration.
[testng] [2024-05-31 02:45:23,495] [pool-1-thread-2] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr:
[testng] 02:45:23,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:45:23,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:23,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_02-45-23.log]
[testng] 02:45:23,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2dd770 - End of configuration.
[testng] [2024-05-31 02:45:24,740] [pool-1-thread-4] Initializing /data/public/NIH/zstat1.nii:
[testng] [2024-05-31 02:45:24,754] [pool-1-thread-6] Initializing /data/public/NIH/newsirp_final_XML.nii:
[testng] [2024-05-31 02:45:24,770] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr:
[testng] [2024-05-31 02:45:24,784] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii.gz:
[testng] [2024-05-31 02:45:24,865] [pool-1-thread-10] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr:
[testng] [2024-05-31 02:45:24,873] [pool-1-thread-11] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr:
[testng] [2024-05-31 02:45:24,882] [pool-1-thread-9] Initializing /data/public/NIH/minimal.hdr:
[testng] [2024-05-31 02:45:24,893] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_RL_nifti.nii:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS