Started by upstream project "BIOFORMATS-test-repo" build number 82
originally caused by:
Started by upstream project "Trigger" build number 92
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9125733114478216620.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12475_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:25:25,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:25:25,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:25:25,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:25,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:25,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:25:25,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:25:25,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:25:25,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:25,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:25,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:25:25,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:25,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:25,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:25,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:25,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:25,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:25,486 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:25,487 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:25,487 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:25,487 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:25,487 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:25:25,488 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:25:25,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-04 01:25:25,497] [main] java.version = 11.0.16
[testng] 01:25:25,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:25,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:25,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-04_01-25-25.log]
[testng] 01:25:25,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-04 01:25:25,547] [main] testng.directory = /data
[testng] [2024-06-04 01:25:25,547] [main] testng.configDirectory = /config
[testng] [2024-06-04 01:25:25,557] [main] testng.multiplier = 1.0
[testng] [2024-06-04 01:25:25,559] [main] testng.in-memory = false
[testng] [2024-06-04 01:25:25,559] [main] testng.allow-missing = false
[testng] [2024-06-04 01:25:25,559] [main] user.language = en
[testng] [2024-06-04 01:25:25,559] [main] user.country = ${user.country}
[testng] [2024-06-04 01:25:25,559] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-04 01:25:26,010] [main] ----------------------------------------
[testng] [2024-06-04 01:25:26,010] [main] Total files: 21
[testng] [2024-06-04 01:25:26,010] [main] Scan time: 0.451 s (21 ms/file)
[testng] [2024-06-04 01:25:26,011] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-04 01:25:26,770] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA:
[testng] 01:25:26,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:26,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-04_01-25-26.log]
[testng] 01:25:26,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@85f5428 - End of configuration.
[testng] [2024-06-04 01:25:26,797] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:25:26,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:26,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-04_01-25-26.log]
[testng] 01:25:26,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration.
[testng] [2024-06-04 01:25:26,847] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA:
[testng] 01:25:26,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:26,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-04_01-25-26.log]
[testng] 01:25:26,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b995578 - End of configuration.
[testng] [2024-06-04 01:25:26,859] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 01:25:26,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:26,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-04_01-25-26.log]
[testng] 01:25:26,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a446b4f - End of configuration.
[testng] [2024-06-04 01:25:26,871] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:25:26,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:26,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-04_01-25-26.log]
[testng] 01:25:26,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed0f48a - End of configuration.
[testng] [2024-06-04 01:25:26,882] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:25:26,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:26,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-04_01-25-26.log]
[testng] 01:25:26,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a651a84 - End of configuration.
[testng] [2024-06-04 01:25:26,893] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA:
[testng] 01:25:26,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:26,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-04_01-25-26.log]
[testng] 01:25:26,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e908d8 - End of configuration.
[testng] [2024-06-04 01:25:26,903] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA:
[testng] 01:25:26,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:26,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-04_01-25-26.log]
[testng] 01:25:26,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e80da2c - End of configuration.
[testng] [2024-06-04 01:25:26,917] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA:
[testng] 01:25:26,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:26,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-04_01-25-26.log]
[testng] 01:25:26,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7afd889b - End of configuration.
[testng] [2024-06-04 01:25:26,942] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:25:26,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:26,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-04_01-25-26.log]
[testng] 01:25:26,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335fca98 - End of configuration.
[testng] [2024-06-04 01:25:26,953] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA:
[testng] 01:25:26,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:26,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-04_01-25-26.log]
[testng] 01:25:26,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec5bb88 - End of configuration.
[testng] [2024-06-04 01:25:26,963] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA:
[testng] 01:25:26,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:26,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:26,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-04_01-25-26.log]
[testng] 01:25:26,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fca5fe - End of configuration.
[testng] [2024-06-04 01:25:28,692] [pool-1-thread-9] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-06-04 01:25:28,705] [pool-1-thread-4] Initializing /data/samples/UBW8.TGA:
[testng] [2024-06-04 01:25:28,715] [pool-1-thread-6] Initializing /data/samples/XING_T24.TGA:
[testng] [2024-06-04 01:25:28,727] [pool-1-thread-7] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-06-04 01:25:28,740] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA:
[testng] [2024-06-04 01:25:28,750] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA:
[testng] [2024-06-04 01:25:28,759] [pool-1-thread-10] Initializing /data/samples/CTC16.TGA:
[testng] [2024-06-04 01:25:28,770] [pool-1-thread-3] Initializing /data/samples/CBW8.TGA:
[testng] [2024-06-04 01:25:28,780] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS