Started by upstream project "BIOFORMATS-test-repo" build number 82
originally caused by:
 Started by upstream project "Trigger" build number 92
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6362623145357297692.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12592_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:43:19,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:43:19,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:43:19,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:43:19,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:43:19,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:43:19,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:43:19,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:43:19,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:43:19,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:43:19,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:43:19,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:43:19,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:43:20,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:43:20,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:43:20,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:43:20,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:43:20,160 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:43:20,161 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:43:20,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:43:20,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:43:20,161 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:43:20,162 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:43:20,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-04 02:43:20,173] [main] java.version = 11.0.16
   [testng] 02:43:20,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:43:20,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:20,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-04_02-43-20.log]
   [testng] 02:43:20,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-06-04 02:43:20,240] [main] testng.directory = /data
   [testng] [2024-06-04 02:43:20,240] [main] testng.configDirectory = /config
   [testng] [2024-06-04 02:43:20,254] [main] testng.multiplier = 1.0
   [testng] [2024-06-04 02:43:20,256] [main] testng.in-memory = false
   [testng] [2024-06-04 02:43:20,256] [main] testng.allow-missing = false
   [testng] [2024-06-04 02:43:20,256] [main] user.language = en
   [testng] [2024-06-04 02:43:20,256] [main] user.country = ${user.country}
   [testng] [2024-06-04 02:43:20,256] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-04 02:43:21,254] [main] ----------------------------------------
   [testng] [2024-06-04 02:43:21,254] [main] Total files: 17
   [testng] [2024-06-04 02:43:21,254] [main] Scan time: 0.997 s (58 ms/file)
   [testng] [2024-06-04 02:43:21,254] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-04 02:43:22,396] [pool-1-thread-1] Initializing /data/jcb/200810162/wt BA plus bio.ipm: 
   [testng] 02:43:22,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:43:22,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-04_02-43-22.log]
   [testng] 02:43:22,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68062770 - End of configuration.
   [testng] [2024-06-04 02:43:22,435] [pool-1-thread-12] Initializing /data/samples/48bit 150x100x3.ipm: 
   [testng] 02:43:22,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:43:22,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-04_02-43-22.log]
   [testng] 02:43:22,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e6d09d5 - End of configuration.
   [testng] [2024-06-04 02:43:22,451] [pool-1-thread-11] Initializing /data/samples/24bit 300x200x3.ipm: 
   [testng] 02:43:22,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:43:22,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-04_02-43-22.log]
   [testng] 02:43:22,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ce9a97 - End of configuration.
   [testng] [2024-06-04 02:43:22,474] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: 
   [testng] 02:43:22,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:43:22,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-04_02-43-22.log]
   [testng] 02:43:22,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2154e5c6 - End of configuration.
   [testng] [2024-06-04 02:43:22,491] [pool-1-thread-9] Initializing /data/nigel/CD48_75_24hrColor.ipm: 
   [testng] 02:43:22,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:43:22,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-04_02-43-22.log]
   [testng] 02:43:22,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1891e8b7 - End of configuration.
   [testng] [2024-06-04 02:43:22,504] [pool-1-thread-8] Initializing /data/jcb/200810162/wt ba no bio.ipm: 
   [testng] 02:43:22,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:43:22,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-04_02-43-22.log]
   [testng] 02:43:22,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fdc01c3 - End of configuration.
   [testng] [2024-06-04 02:43:22,526] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: 
   [testng] 02:43:22,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:43:22,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-04_02-43-22.log]
   [testng] 02:43:22,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47a0c - End of configuration.
   [testng] [2024-06-04 02:43:22,550] [pool-1-thread-6] Initializing /data/christopher/Color48 Copy.ipm: 
   [testng] 02:43:22,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:43:22,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-04_02-43-22.log]
   [testng] 02:43:22,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c652f64 - End of configuration.
   [testng] [2024-06-04 02:43:22,574] [pool-1-thread-5] Initializing /data/jcb/200810162/mutBA plus bio.ipm: 
   [testng] 02:43:22,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:43:22,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-04_02-43-22.log]
   [testng] 02:43:22,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd45fd8 - End of configuration.
   [testng] [2024-06-04 02:43:22,599] [pool-1-thread-4] Initializing /data/samples/16-bit 320x256x3.ipm: 
   [testng] 02:43:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:43:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-04_02-43-22.log]
   [testng] 02:43:22,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2175c67f - End of configuration.
   [testng] [2024-06-04 02:43:22,619] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: 
   [testng] 02:43:22,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:43:22,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-04_02-43-22.log]
   [testng] 02:43:22,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration.
   [testng] [2024-06-04 02:43:22,643] [pool-1-thread-2] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: 
   [testng] 02:43:22,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:43:22,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:43:22,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-04_02-43-22.log]
   [testng] 02:43:22,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5feaffeb - End of configuration.
   [testng] [2024-06-04 02:43:24,234] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: 
   [testng] [2024-06-04 02:43:24,260] [pool-1-thread-3] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: 
   [testng] [2024-06-04 02:43:24,287] [pool-1-thread-4] Initializing /data/samples/16bit 320x256x1.ipm: 
   [testng] [2024-06-04 02:43:24,295] [pool-1-thread-11] Initializing /data/jcb/200810162/mut BA no bio.ipm: 
   [testng] [2024-06-04 02:43:24,315] [pool-1-thread-9] Initializing /data/samples/08Bit 320x256xthree.ipm: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS