Started by upstream project "BIOFORMATS-test-repo" build number 83
originally caused by:
Started by upstream project "Trigger" build number 93
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9328077594564450874.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12652_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:29:31,351 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:29:31,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:29:31,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:31,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:31,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:29:31,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:31,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:29:31,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:29:31,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:29:31,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:29:31,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:29:31,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:29:31,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:29:31,613 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:29:31,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:29:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:29:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:29:31,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:29:31,615 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:29:31,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-05 01:29:31,625] [main] java.version = 17.0.2
[testng] 01:29:31,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:29:31,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:31,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-05_01-29-31.log]
[testng] 01:29:31,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-05 01:29:31,675] [main] testng.directory = /data
[testng] [2024-06-05 01:29:31,675] [main] testng.configDirectory = /config
[testng] [2024-06-05 01:29:31,684] [main] testng.multiplier = 1.0
[testng] [2024-06-05 01:29:31,685] [main] testng.in-memory = false
[testng] [2024-06-05 01:29:31,685] [main] testng.allow-missing = false
[testng] [2024-06-05 01:29:31,685] [main] user.language = en
[testng] [2024-06-05 01:29:31,685] [main] user.country = ${user.country}
[testng] [2024-06-05 01:29:31,685] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-05 01:29:32,059] [main] ----------------------------------------
[testng] [2024-06-05 01:29:32,059] [main] Total files: 25
[testng] [2024-06-05 01:29:32,059] [main] Scan time: 0.374 s (14 ms/file)
[testng] [2024-06-05 01:29:32,059] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-05 01:29:33,833] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:29:33,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:29:33,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:33,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-05_01-29-33.log]
[testng] 01:29:33,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b06d22d - End of configuration.
[testng] [2024-06-05 01:29:33,894] [pool-1-thread-12] Initializing /data/misc/planet.pict:
[testng] 01:29:33,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:29:33,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:33,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-05_01-29-33.log]
[testng] 01:29:33,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53edc2c4 - End of configuration.
[testng] [2024-06-05 01:29:33,942] [pool-1-thread-11] Initializing /data/jqd/32bit.pict:
[testng] 01:29:33,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:29:33,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:33,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-05_01-29-33.log]
[testng] 01:29:33,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a511d88 - End of configuration.
[testng] [2024-06-05 01:29:33,991] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT:
[testng] 01:29:33,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:29:33,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:33,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-05_01-29-33.log]
[testng] 01:29:33,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31eb3162 - End of configuration.
[testng] [2024-06-05 01:29:34,018] [pool-1-thread-9] Initializing /data/misc/planet.png:
[testng] 01:29:34,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:29:34,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-05_01-29-34.log]
[testng] 01:29:34,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51f1b290 - End of configuration.
[testng] [2024-06-05 01:29:34,025] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:29:34,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:29:34,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-05_01-29-34.log]
[testng] 01:29:34,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration.
[testng] [2024-06-05 01:29:34,035] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:29:34,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:29:34,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-05_01-29-34.log]
[testng] 01:29:34,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration.
[testng] [2024-06-05 01:29:34,096] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:29:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-05_01-29-34.log]
[testng] 01:29:34,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration.
[testng] [2024-06-05 01:29:34,110] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] 01:29:34,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:34,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-05_01-29-34.log]
[testng] 01:29:34,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ebbee6 - End of configuration.
[testng] [2024-06-05 01:29:34,120] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:29:34,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:34,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-05_01-29-34.log]
[testng] 01:29:34,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc6800 - End of configuration.
[testng] [2024-06-05 01:29:34,316] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:29:34,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:34,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-05_01-29-34.log]
[testng] 01:29:34,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration.
[testng] [2024-06-05 01:29:34,338] [pool-1-thread-2] Initializing /data/misc/planet2.pict:
[testng] 01:29:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:34,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-05_01-29-34.log]
[testng] 01:29:34,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28197cb6 - End of configuration.
[testng] [2024-06-05 01:29:35,903] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict:
[testng] [2024-06-05 01:29:35,919] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-06-05 01:29:35,940] [pool-1-thread-6] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-06-05 01:29:35,958] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-06-05 01:29:36,116] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-06-05 01:29:36,145] [pool-1-thread-9] Initializing /data/misc/swlogo.pict:
[testng] [2024-06-05 01:29:36,378] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-06-05 01:29:36,547] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-06-05 01:29:36,568] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-06-05 01:29:36,587] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-06-05 01:29:36,693] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-06-05 01:29:36,709] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-06-05 01:29:36,803] [pool-1-thread-8] Initializing /data/jqd/mire32.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS