Started by upstream project "BIOFORMATS-test-repo" build number 1
originally caused by:
 Started by upstream project "Trigger" build number 1
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17838176257826628821.sh
+ '[' leica-scn = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_127_merge_ci -v /uod/idr/repos/curated/leica-scn:/data -v /uod/idr-scratch/devspace/curated/leica-scn:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 17:18:30,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 17:18:30,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 17:18:30,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 17:18:30,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 17:18:30,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 17:18:30,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 17:18:30,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 17:18:30,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 17:18:30,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 17:18:30,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 17:18:30,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 17:18:30,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 17:18:30,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 17:18:30,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 17:18:30,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 17:18:30,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 17:18:30,952 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 17:18:30,952 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 17:18:30,952 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 17:18:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 17:18:30,953 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 17:18:30,954 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 17:18:30,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-14 17:18:30,965] [main] java.version = 21
   [testng] 17:18:30,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 17:18:30,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:18:31,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_17-18-31.log]
   [testng] 17:18:31,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-03-14 17:18:31,143] [main] testng.directory = /data
   [testng] [2024-03-14 17:18:31,143] [main] testng.configDirectory = /config
   [testng] [2024-03-14 17:18:31,153] [main] testng.multiplier = 1.0
   [testng] [2024-03-14 17:18:31,154] [main] testng.in-memory = false
   [testng] [2024-03-14 17:18:31,154] [main] testng.allow-missing = false
   [testng] [2024-03-14 17:18:31,154] [main] user.language = en
   [testng] [2024-03-14 17:18:31,154] [main] user.country = ${user.country}
   [testng] [2024-03-14 17:18:31,154] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-14 17:18:50,515] [main] ----------------------------------------
   [testng] [2024-03-14 17:18:50,515] [main] Total files: 12
   [testng] [2024-03-14 17:18:50,515] [main] Scan time: 19.361 s (1613 ms/file)
   [testng] [2024-03-14 17:18:50,516] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 12 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-14 17:18:58,642] [pool-1-thread-1] Initializing /data/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn: 
   [testng] 17:18:58,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 17:18:58,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:18:58,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_17-18-58.log]
   [testng] 17:18:58,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c77e2e4 - End of configuration.
   [testng] [2024-03-14 17:18:59,227] [pool-1-thread-12] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46.scn: 
   [testng] 17:18:59,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 17:18:59,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:18:59,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-14_17-18-59.log]
   [testng] 17:18:59,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@139f3026 - End of configuration.
   [testng] [2024-03-14 17:18:59,788] [pool-1-thread-11] Initializing /data/qa-11049/HP15.4994_2015-04-28.scn: 
   [testng] 17:18:59,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 17:18:59,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:18:59,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-14_17-18-59.log]
   [testng] 17:18:59,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e2e2465 - End of configuration.
   [testng] [2024-03-14 17:19:00,334] [pool-1-thread-10] Initializing /data/qa-17671/132223-12_022a1963-b32e-467f-8242-b51a5295951f.SCN: 
   [testng] 17:19:00,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 17:19:00,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:00,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_17-19-00.log]
   [testng] 17:19:00,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c79a84b - End of configuration.
   [testng] [2024-03-14 17:19:00,970] [pool-1-thread-9] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 fullresolution.jpg: 
   [testng] 17:19:00,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 17:19:00,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:00,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_17-19-00.log]
   [testng] 17:19:00,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a5f084 - End of configuration.
   [testng] [2024-03-14 17:19:01,103] [pool-1-thread-8] Initializing /data/qa-10469/Slide_907790L_DAPI_Ki67.scn: 
   [testng] 17:19:01,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 17:19:01,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:01,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_17-19-01.log]
   [testng] 17:19:01,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4054c9 - End of configuration.
   [testng] [2024-03-14 17:19:01,907] [pool-1-thread-7] Initializing /data/public/openslide/Leica-2/Leica-2.scn: 
   [testng] 17:19:01,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 17:19:01,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:01,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_17-19-01.log]
   [testng] 17:19:01,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc9ee1 - End of configuration.
   [testng] [2024-03-14 17:19:02,770] [pool-1-thread-6] Initializing /data/scott/ImageCollection_0000000418_2010-10-27 13_31_31Z.scn: 
   [testng] 17:19:02,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 17:19:02,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:02,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_17-19-02.log]
   [testng] 17:19:02,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@415fc1ed - End of configuration.
   [testng] [2024-03-14 17:19:03,363] [pool-1-thread-5] Initializing /data/public/openslide/Leica-3/Leica-3.scn: 
   [testng] 17:19:03,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 17:19:03,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:03,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_17-19-03.log]
   [testng] 17:19:03,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1618d605 - End of configuration.
   [testng] [2024-03-14 17:19:04,009] [pool-1-thread-4] Initializing /data/scott/Oral_Biology_13 (1).scn: 
   [testng] 17:19:04,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 17:19:04,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:04,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_17-19-04.log]
   [testng] 17:19:04,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e4fde3e - End of configuration.
   [testng] [2024-03-14 17:19:04,812] [pool-1-thread-3] Initializing /data/public/openslide/Leica-1/Leica-1.scn: 
   [testng] 17:19:04,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 17:19:04,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:04,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_17-19-04.log]
   [testng] 17:19:04,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1deaac6b - End of configuration.
   [testng] [2024-03-14 17:19:05,505] [pool-1-thread-2] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 opened usig LOCI.tif: 
   [testng] 17:19:05,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 17:19:05,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 17:19:05,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_17-19-05.log]
   [testng] 17:19:05,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d1c1a4a - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 636, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 45 seconds
Finished: SUCCESS