Started by upstream project "BIOFORMATS-test-repo" build number 84
originally caused by:
Started by upstream project "Trigger" build number 95
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14421416704986655517.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12793_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 08:58:36,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:58:36,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 08:58:36,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:58:36,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:58:36,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:58:36,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:58:36,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:58:36,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:58:36,881 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:58:36,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:58:36,882 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:58:36,882 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:58:37,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:58:37,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:58:37,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:58:37,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:58:37,110 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:58:37,110 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:58:37,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:58:37,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:58:37,111 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 08:58:37,112 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 08:58:37,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 231 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-06 08:58:37,122] [main] java.version = 21
[testng] 08:58:37,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:58:37,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:37,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-06_08-58-37.log]
[testng] 08:58:37,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-06-06 08:58:37,193] [main] testng.directory = /data
[testng] [2024-06-06 08:58:37,193] [main] testng.configDirectory = /config
[testng] [2024-06-06 08:58:37,202] [main] testng.multiplier = 1.0
[testng] [2024-06-06 08:58:37,203] [main] testng.in-memory = false
[testng] [2024-06-06 08:58:37,203] [main] testng.allow-missing = false
[testng] [2024-06-06 08:58:37,203] [main] user.language = en
[testng] [2024-06-06 08:58:37,203] [main] user.country = ${user.country}
[testng] [2024-06-06 08:58:37,203] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-06 08:58:38,677] [main] ----------------------------------------
[testng] [2024-06-06 08:58:38,677] [main] Total files: 21
[testng] [2024-06-06 08:58:38,677] [main] Scan time: 1.474 s (70 ms/file)
[testng] [2024-06-06 08:58:38,678] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-06 08:58:40,743] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 08:58:40,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:58:40,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:40,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-06_08-58-40.log]
[testng] 08:58:40,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a74c0f1 - End of configuration.
[testng] [2024-06-06 08:58:40,808] [pool-1-thread-12] Initializing /data/venu/VENU02.IMG:
[testng] 08:58:40,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:58:40,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:40,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-06_08-58-40.log]
[testng] 08:58:40,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@198e8814 - End of configuration.
[testng] [2024-06-06 08:58:40,833] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 08:58:40,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:58:40,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:40,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-06_08-58-40.log]
[testng] 08:58:40,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335a23a4 - End of configuration.
[testng] [2024-06-06 08:58:40,919] [pool-1-thread-10] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 08:58:40,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:58:40,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:40,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-06_08-58-40.log]
[testng] 08:58:40,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6614d - End of configuration.
[testng] [2024-06-06 08:58:40,991] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 08:58:40,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:58:40,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:40,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-06_08-58-40.log]
[testng] 08:58:40,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61af2656 - End of configuration.
[testng] [2024-06-06 08:58:41,037] [pool-1-thread-8] Initializing /data/venu/VENU01.IMG:
[testng] 08:58:41,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:58:41,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-06_08-58-41.log]
[testng] 08:58:41,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71aed8e6 - End of configuration.
[testng] [2024-06-06 08:58:41,064] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 08:58:41,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:58:41,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-06_08-58-41.log]
[testng] 08:58:41,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a75fe1d - End of configuration.
[testng] [2024-06-06 08:58:41,164] [pool-1-thread-6] Initializing /data/venu/VENU02.TIF:
[testng] 08:58:41,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:58:41,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-06_08-58-41.log]
[testng] 08:58:41,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7236d4 - End of configuration.
[testng] [2024-06-06 08:58:41,236] [pool-1-thread-5] Initializing /data/venu/VENU_Five.TIF:
[testng] 08:58:41,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:58:41,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-06_08-58-41.log]
[testng] 08:58:41,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c852bd7 - End of configuration.
[testng] [2024-06-06 08:58:41,278] [pool-1-thread-4] Initializing /data/venu/VENU01.TIF:
[testng] 08:58:41,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:58:41,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-06_08-58-41.log]
[testng] 08:58:41,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486e00c2 - End of configuration.
[testng] [2024-06-06 08:58:41,344] [pool-1-thread-3] Initializing /data/venu/VENU_Six.TIF:
[testng] 08:58:41,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:58:41,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-06_08-58-41.log]
[testng] 08:58:41,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f27155 - End of configuration.
[testng] [2024-06-06 08:58:41,385] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF:
[testng] 08:58:41,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:58:41,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:58:41,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-06_08-58-41.log]
[testng] 08:58:41,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c63c66b - End of configuration.
[testng] [2024-06-06 08:58:44,544] [pool-1-thread-8] Initializing /data/venu/VENU03.TIF:
[testng] [2024-06-06 08:58:44,599] [pool-1-thread-10] Initializing /data/venu/VENU_Eight.TIF:
[testng] [2024-06-06 08:58:44,634] [pool-1-thread-2] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] [2024-06-06 08:58:44,701] [pool-1-thread-1] Initializing /data/venu/VENU.TIF:
[testng] [2024-06-06 08:58:44,726] [pool-1-thread-6] Initializing /data/venu/VENU03.IMG:
[testng] [2024-06-06 08:58:44,741] [pool-1-thread-4] Initializing /data/venu/VENU_Seven.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS