Started by upstream project "BIOFORMATS-test-repo" build number 84
originally caused by:
Started by upstream project "Trigger" build number 95
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins14844841422034011713.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12899_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 09:56:36,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 09:56:36,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 09:56:36,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:56:36,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:56:36,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 09:56:36,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 09:56:36,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 09:56:36,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:56:36,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:56:36,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 09:56:36,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 09:56:36,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 09:56:36,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:56:36,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:56:36,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:56:36,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:56:36,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:56:36,593 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:56:36,593 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:56:36,593 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:56:36,593 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 09:56:36,595 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 09:56:36,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 305 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-06 09:56:36,610] [main] java.version = 21
[testng] 09:56:36,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:56:36,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:36,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-06_09-56-36.log]
[testng] 09:56:36,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-06-06 09:56:36,671] [main] testng.directory = /data
[testng] [2024-06-06 09:56:36,671] [main] testng.configDirectory = /config
[testng] [2024-06-06 09:56:36,687] [main] testng.multiplier = 1.0
[testng] [2024-06-06 09:56:36,688] [main] testng.in-memory = false
[testng] [2024-06-06 09:56:36,688] [main] testng.allow-missing = false
[testng] [2024-06-06 09:56:36,688] [main] user.language = en
[testng] [2024-06-06 09:56:36,688] [main] user.country = ${user.country}
[testng] [2024-06-06 09:56:36,688] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-06 09:56:37,629] [main] ----------------------------------------
[testng] [2024-06-06 09:56:37,629] [main] Total files: 32
[testng] [2024-06-06 09:56:37,629] [main] Scan time: 0.94 s (29 ms/file)
[testng] [2024-06-06 09:56:37,630] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-06 09:56:41,551] [pool-1-thread-1] Initializing /data/geert/bad example1.jpg:
[testng] 09:56:41,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:56:41,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-06_09-56-41.log]
[testng] 09:56:41,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f72e644 - End of configuration.
[testng] [2024-06-06 09:56:41,602] [pool-1-thread-12] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] 09:56:41,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:56:41,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-06_09-56-41.log]
[testng] 09:56:41,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c378640 - End of configuration.
[testng] [2024-06-06 09:56:41,641] [pool-1-thread-11] Initializing /data/adrian/test_img.1sc:
[testng] 09:56:41,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:56:41,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-06_09-56-41.log]
[testng] 09:56:41,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e750512 - End of configuration.
[testng] [2024-06-06 09:56:41,715] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc.jpg:
[testng] 09:56:41,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:56:41,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-06_09-56-41.log]
[testng] 09:56:41,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11adfcdc - End of configuration.
[testng] [2024-06-06 09:56:41,766] [pool-1-thread-10] Initializing /data/geert/good example1.1sc:
[testng] 09:56:41,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:56:41,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-06_09-56-41.log]
[testng] 09:56:41,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2ca6a7 - End of configuration.
[testng] [2024-06-06 09:56:41,845] [pool-1-thread-8] Initializing /data/qa-29469/bad3.1sc:
[testng] 09:56:41,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:56:41,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-06_09-56-41.log]
[testng] 09:56:41,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ef4e964 - End of configuration.
[testng] [2024-06-06 09:56:41,907] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] 09:56:41,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:56:41,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-06_09-56-41.log]
[testng] 09:56:41,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60289874 - End of configuration.
[testng] [2024-06-06 09:56:41,936] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc:
[testng] 09:56:41,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:56:41,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-06_09-56-41.log]
[testng] 09:56:41,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65abf03e - End of configuration.
[testng] [2024-06-06 09:56:41,950] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc:
[testng] 09:56:41,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:56:41,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-06_09-56-41.log]
[testng] 09:56:41,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740ca14a - End of configuration.
[testng] [2024-06-06 09:56:41,987] [pool-1-thread-4] Initializing /data/keith/PF020328saur v3.1sc:
[testng] 09:56:41,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:56:41,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:41,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-06_09-56-41.log]
[testng] 09:56:41,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c090868 - End of configuration.
[testng] [2024-06-06 09:56:42,017] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] 09:56:42,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:56:42,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:42,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-06_09-56-42.log]
[testng] 09:56:42,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5930dc88 - End of configuration.
[testng] [2024-06-06 09:56:42,109] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] 09:56:42,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:56:42,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:56:42,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-06_09-56-42.log]
[testng] 09:56:42,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d0e5c7 - End of configuration.
[testng] [2024-06-06 09:56:43,812] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2024-06-06 09:56:43,919] [pool-1-thread-4] Initializing /data/samples/imagesEight.1sc:
[testng] [2024-06-06 09:56:43,942] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc:
[testng] [2024-06-06 09:56:44,090] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] [2024-06-06 09:56:44,514] [pool-1-thread-4] Initializing /data/qa-29469/bad2.1sc:
[testng] [2024-06-06 09:56:44,828] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-06-06 09:56:44,860] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] [2024-06-06 09:56:45,103] [pool-1-thread-2] Initializing /data/keith/test.1sc:
[testng] [2024-06-06 09:56:45,380] [pool-1-thread-5] Initializing /data/keith/test2.1sc:
[testng] [2024-06-06 09:56:45,404] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] [2024-06-06 09:56:45,464] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] [2024-06-06 09:56:45,572] [pool-1-thread-11] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-06-06 09:56:45,757] [pool-1-thread-10] Initializing /data/qa-29459/bad.1sc:
[testng] [2024-06-06 09:56:45,792] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2024-06-06 09:56:46,029] [pool-1-thread-2] Initializing /data/qa-29469/good.1sc:
[testng] [2024-06-06 09:56:46,109] [pool-1-thread-4] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] [2024-06-06 09:56:46,168] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc:
[testng] [2024-06-06 09:56:46,254] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-06-06 09:56:46,385] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff:
[testng] [2024-06-06 09:56:46,438] [pool-1-thread-7] Initializing /data/geert/good example1.1sc.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS