Started by upstream project "BIOFORMATS-test-repo" build number 85
originally caused by:
Started by upstream project "Trigger" build number 96
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16337392734996075756.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_12953_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:24:33,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:33,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:33,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:33,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:33,978 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:33,979 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:33,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:33,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:33,979 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:24:33,980 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:24:33,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 402 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-07 01:24:33,991] [main] java.version = 1.8.0_342
[testng] 01:24:33,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:33,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:34,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_01-24-34.log]
[testng] 01:24:34,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-07 01:24:34,061] [main] testng.directory = /data
[testng] [2024-06-07 01:24:34,062] [main] testng.configDirectory = /config
[testng] [2024-06-07 01:24:34,081] [main] testng.multiplier = 1.0
[testng] [2024-06-07 01:24:34,081] [main] testng.in-memory = false
[testng] [2024-06-07 01:24:34,081] [main] testng.allow-missing = false
[testng] [2024-06-07 01:24:34,081] [main] user.language = en
[testng] [2024-06-07 01:24:34,081] [main] user.country = ${user.country}
[testng] [2024-06-07 01:24:34,081] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-07 01:24:34,952] [main] ----------------------------------------
[testng] [2024-06-07 01:24:34,952] [main] Total files: 15
[testng] [2024-06-07 01:24:34,952] [main] Scan time: 0.871 s (58 ms/file)
[testng] [2024-06-07 01:24:34,953] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-07 01:24:36,787] [pool-1-thread-1] Initializing /data/samples/emptykey/test.am:
[testng] 01:24:36,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:24:36,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_01-24-36.log]
[testng] 01:24:36,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c24a1a - End of configuration.
[testng] [2024-06-07 01:24:36,818] [pool-1-thread-12] Initializing /data/public/ignacio/test.am:
[testng] 01:24:36,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:24:36,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_01-24-36.log]
[testng] 01:24:36,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10248b30 - End of configuration.
[testng] [2024-06-07 01:24:36,836] [pool-1-thread-11] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG:
[testng] 01:24:36,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:24:36,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_01-24-36.log]
[testng] 01:24:36,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f96191f - End of configuration.
[testng] [2024-06-07 01:24:36,843] [pool-1-thread-10] Initializing /data/public/imagesc-50585/BF_CheckMIB.am:
[testng] 01:24:36,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:24:36,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_01-24-36.log]
[testng] 01:24:36,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@545e4e34 - End of configuration.
[testng] [2024-06-07 01:24:36,858] [pool-1-thread-9] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am:
[testng] 01:24:36,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:24:36,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_01-24-36.log]
[testng] 01:24:36,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3666c8d5 - End of configuration.
[testng] [2024-06-07 01:24:36,896] [pool-1-thread-8] Initializing /data/johannes/template.labels:
[testng] 01:24:36,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:24:36,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_01-24-36.log]
[testng] 01:24:36,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522c54ed - End of configuration.
[testng] [2024-06-07 01:24:36,913] [pool-1-thread-7] Initializing /data/johannes/template.grey:
[testng] 01:24:36,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:24:36,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_01-24-36.log]
[testng] 01:24:36,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4baa6e - End of configuration.
[testng] [2024-06-07 01:24:36,968] [pool-1-thread-6] Initializing /data/public/imagesc-50585/BF_Check.tif:
[testng] 01:24:36,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:24:36,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:36,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_01-24-36.log]
[testng] 01:24:36,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b0956d - End of configuration.
[testng] [2024-06-07 01:24:37,000] [pool-1-thread-5] Initializing /data/jeremy/Virus_Membrane7.am:
[testng] 01:24:37,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:24:37,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:37,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_01-24-37.log]
[testng] 01:24:37,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a65c49 - End of configuration.
[testng] [2024-06-07 01:24:37,057] [pool-1-thread-4] Initializing /data/public/imagesc-50585/BF_CheckAmira.am:
[testng] 01:24:37,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:24:37,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:37,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_01-24-37.log]
[testng] 01:24:37,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6212b984 - End of configuration.
[testng] [2024-06-07 01:24:37,071] [pool-1-thread-3] Initializing /data/jeremy/Hiv_spikes.am:
[testng] 01:24:37,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:24:37,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:37,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_01-24-37.log]
[testng] 01:24:37,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a657a7f - End of configuration.
[testng] [2024-06-07 01:24:37,098] [pool-1-thread-2] Initializing /data/ilya/test.am:
[testng] 01:24:37,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:24:37,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:37,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_01-24-37.log]
[testng] 01:24:37,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2472c989 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS