Started by upstream project "BIOFORMATS-test-repo" build number 85
originally caused by:
Started by upstream project "Trigger" build number 96
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11380952833389726837.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13024_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:13:43,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:13:43,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:13:43,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:43,925 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:43,925 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:13:43,925 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:13:43,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:13:43,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:43,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:43,927 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:13:43,927 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:13:43,927 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:13:44,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:13:44,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:13:44,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:13:44,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:13:44,384 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:13:44,384 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:13:44,384 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:13:44,385 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:13:44,385 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:13:44,386 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:13:44,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 460 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-07 02:13:44,400] [main] java.version = 1.8.0_342
[testng] 02:13:44,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:13:44,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:44,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-13-44.log]
[testng] 02:13:44,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-07 02:13:44,476] [main] testng.directory = /data
[testng] [2024-06-07 02:13:44,476] [main] testng.configDirectory = /config
[testng] [2024-06-07 02:13:44,496] [main] testng.multiplier = 1.0
[testng] [2024-06-07 02:13:44,496] [main] testng.in-memory = false
[testng] [2024-06-07 02:13:44,496] [main] testng.allow-missing = false
[testng] [2024-06-07 02:13:44,496] [main] user.language = en
[testng] [2024-06-07 02:13:44,496] [main] user.country = ${user.country}
[testng] [2024-06-07 02:13:44,496] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-07 02:13:44,930] [main] ----------------------------------------
[testng] [2024-06-07 02:13:44,931] [main] Total files: 19
[testng] [2024-06-07 02:13:44,931] [main] Scan time: 0.434 s (22 ms/file)
[testng] [2024-06-07 02:13:44,931] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-07 02:13:46,958] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:13:46,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:13:46,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:46,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-13-46.log]
[testng] 02:13:46,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c8e46 - End of configuration.
[testng] [2024-06-07 02:13:46,993] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:13:46,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:13:46,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:46,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-13-46.log]
[testng] 02:13:46,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10857d79 - End of configuration.
[testng] [2024-06-07 02:13:47,050] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:13:47,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:13:47,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-13-47.log]
[testng] 02:13:47,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4f807c - End of configuration.
[testng] [2024-06-07 02:13:47,069] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 02:13:47,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:13:47,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-13-47.log]
[testng] 02:13:47,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a49bf8 - End of configuration.
[testng] [2024-06-07 02:13:47,087] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:13:47,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:13:47,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-13-47.log]
[testng] 02:13:47,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a473ed6 - End of configuration.
[testng] [2024-06-07 02:13:47,106] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:13:47,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:13:47,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-13-47.log]
[testng] 02:13:47,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26563289 - End of configuration.
[testng] [2024-06-07 02:13:47,206] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:13:47,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:13:47,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-13-47.log]
[testng] 02:13:47,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5092b30c - End of configuration.
[testng] [2024-06-07 02:13:47,233] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:13:47,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:13:47,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-13-47.log]
[testng] 02:13:47,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2129769 - End of configuration.
[testng] [2024-06-07 02:13:47,261] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 02:13:47,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:13:47,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-13-47.log]
[testng] 02:13:47,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b19f54c - End of configuration.
[testng] [2024-06-07 02:13:47,280] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:13:47,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:13:47,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-13-47.log]
[testng] 02:13:47,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration.
[testng] [2024-06-07 02:13:47,299] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 02:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-13-47.log]
[testng] 02:13:47,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration.
[testng] [2024-06-07 02:13:47,636] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:13:47,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:13:47,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:47,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-13-47.log]
[testng] 02:13:47,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d2419e - End of configuration.
[testng] [2024-06-07 02:13:56,615] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-06-07 02:13:56,631] [pool-1-thread-7] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-06-07 02:13:56,656] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-06-07 02:13:56,678] [pool-1-thread-6] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-06-07 02:13:56,711] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-06-07 02:13:56,732] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-06-07 02:13:56,756] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 23 seconds
Finished: SUCCESS