Started by upstream project "BIOFORMATS-test-repo" build number 85
originally caused by:
 Started by upstream project "Trigger" build number 96
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5491789901544049814.sh
+ '[' imspector = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13051_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:21:59,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:21:59,668 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:21:59,668 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:21:59,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:21:59,669 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:21:59,669 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:21:59,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:21:59,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:21:59,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:21:59,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:21:59,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:21:59,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:21:59,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:21:59,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:21:59,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:21:59,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:21:59,933 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:21:59,934 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:21:59,934 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:21:59,934 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:21:59,934 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:21:59,935 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:21:59,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-07 02:21:59,945] [main] java.version = 1.8.0_342
   [testng] 02:21:59,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:21:59,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:21:59,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-21-59.log]
   [testng] 02:21:59,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-07 02:21:59,997] [main] testng.directory = /data
   [testng] [2024-06-07 02:21:59,998] [main] testng.configDirectory = /config
   [testng] [2024-06-07 02:22:00,010] [main] testng.multiplier = 1.0
   [testng] [2024-06-07 02:22:00,011] [main] testng.in-memory = false
   [testng] [2024-06-07 02:22:00,011] [main] testng.allow-missing = false
   [testng] [2024-06-07 02:22:00,011] [main] user.language = en
   [testng] [2024-06-07 02:22:00,011] [main] user.country = ${user.country}
   [testng] [2024-06-07 02:22:00,011] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-07 02:22:01,608] [main] ----------------------------------------
   [testng] [2024-06-07 02:22:01,608] [main] Total files: 29
   [testng] [2024-06-07 02:22:01,608] [main] Scan time: 1.597 s (55 ms/file)
   [testng] [2024-06-07 02:22:01,608] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-07 02:22:07,310] [pool-1-thread-1] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr: 
   [testng] 02:22:07,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:22:07,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-22-07.log]
   [testng] 02:22:07,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740b7b3f - End of configuration.
   [testng] [2024-06-07 02:22:07,351] [pool-1-thread-12] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps.msr: 
   [testng] 02:22:07,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:22:07,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-22-07.log]
   [testng] 02:22:07,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8b5bb2 - End of configuration.
   [testng] [2024-06-07 02:22:07,375] [pool-1-thread-11] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr: 
   [testng] 02:22:07,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:22:07,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-22-07.log]
   [testng] 02:22:07,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73ecdbe0 - End of configuration.
   [testng] [2024-06-07 02:22:07,402] [pool-1-thread-10] Initializing /data/qa-7992/IllegalArgumentException.msr: 
   [testng] 02:22:07,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:22:07,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-22-07.log]
   [testng] 02:22:07,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7704ba5 - End of configuration.
   [testng] [2024-06-07 02:22:07,428] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif: 
   [testng] 02:22:07,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:22:07,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-22-07.log]
   [testng] 02:22:07,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28621b8f - End of configuration.
   [testng] [2024-06-07 02:22:07,684] [pool-1-thread-8] Initializing /data/qa-17102/2 channels FLIM time series.msr: 
   [testng] 02:22:07,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:22:07,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-22-07.log]
   [testng] 02:22:07,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7337f382 - End of configuration.
   [testng] [2024-06-07 02:22:07,729] [pool-1-thread-7] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr: 
   [testng] 02:22:07,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:22:07,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-22-07.log]
   [testng] 02:22:07,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504afbf4 - End of configuration.
   [testng] [2024-06-07 02:22:07,766] [pool-1-thread-6] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr: 
   [testng] 02:22:07,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:22:07,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-22-07.log]
   [testng] 02:22:07,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199377f4 - End of configuration.
   [testng] [2024-06-07 02:22:07,801] [pool-1-thread-5] Initializing /data/qa-7658/Document1_13-09-25.msr: 
   [testng] 02:22:07,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:22:07,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-22-07.log]
   [testng] 02:22:07,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e5fe5cb - End of configuration.
   [testng] [2024-06-07 02:22:07,845] [pool-1-thread-4] Initializing /data/qa-7936/01 - working.msr: 
   [testng] 02:22:07,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:22:07,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-22-07.log]
   [testng] 02:22:07,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7594a95b - End of configuration.
   [testng] [2024-06-07 02:22:07,873] [pool-1-thread-3] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr: 
   [testng] 02:22:07,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:22:07,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-22-07.log]
   [testng] 02:22:07,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c4f925 - End of configuration.
   [testng] [2024-06-07 02:22:07,910] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr: 
   [testng] 02:22:07,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:22:07,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:07,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-22-07.log]
   [testng] 02:22:07,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d80cbf - End of configuration.
   [testng] [2024-06-07 02:22:10,508] [pool-1-thread-6] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr: 
   [testng] [2024-06-07 02:22:10,542] [pool-1-thread-1] Initializing /data/qa-7936/z-TC - for LOCI.msr: 
   [testng] [2024-06-07 02:22:10,579] [pool-1-thread-4] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr: 
   [testng] [2024-06-07 02:22:10,614] [pool-1-thread-5] Initializing /data/qa-27309/181109_e3_cut.msr: 
   [testng] [2024-06-07 02:22:10,633] [pool-1-thread-8] Initializing /data/qa-7936/02 - not working.msr: 
   [testng] [2024-06-07 02:22:10,667] [pool-1-thread-3] Initializing /data/qa-17102/2 channels FLIM z stack.msr: 
   [testng] [2024-06-07 02:22:10,709] [pool-1-thread-10] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif: 
   [testng] [2024-06-07 02:22:11,035] [pool-1-thread-11] Initializing /data/qa-17102/1 channel binning 8 time series.msr: 
   [testng] [2024-06-07 02:22:11,058] [pool-1-thread-12] Initializing /data/qa-17102/1 channel binning 4 time series.msr: 
   [testng] [2024-06-07 02:22:11,082] [pool-1-thread-7] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr: 
   [testng] [2024-06-07 02:22:11,114] [pool-1-thread-2] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr: 
   [testng] [2024-06-07 02:22:11,450] [pool-1-thread-5] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr: 
   [testng] [2024-06-07 02:22:11,538] [pool-1-thread-2] Initializing /data/qa-7992/NegativeArraySizeException_small.msr: 
   [testng] [2024-06-07 02:22:11,578] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 -  500x500x105_1046x1046x57_1.875um_steps/02 -  500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif: 
   [testng] [2024-06-07 02:22:11,849] [pool-1-thread-4] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr: 
   [testng] [2024-06-07 02:22:11,920] [pool-1-thread-12] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS