Started by upstream project "BIOFORMATS-test-repo" build number 85
originally caused by:
 Started by upstream project "Trigger" build number 96
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins7190290289232421263.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13072_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:44:28,182 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:44:28,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:44:28,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:28,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:28,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:44:28,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:44:28,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:44:28,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:44:28,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:44:28,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:44:28,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:44:28,438 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:44:28,438 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:44:28,439 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:44:28,439 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:44:28,439 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:44:28,440 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:44:28,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-07 02:44:28,450] [main] java.version = 1.8.0_342
   [testng] 02:44:28,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:44:28,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:28,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-44-28.log]
   [testng] 02:44:28,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-07 02:44:28,500] [main] testng.directory = /data
   [testng] [2024-06-07 02:44:28,500] [main] testng.configDirectory = /config
   [testng] [2024-06-07 02:44:28,511] [main] testng.multiplier = 1.0
   [testng] [2024-06-07 02:44:28,512] [main] testng.in-memory = false
   [testng] [2024-06-07 02:44:28,512] [main] testng.allow-missing = false
   [testng] [2024-06-07 02:44:28,512] [main] user.language = en
   [testng] [2024-06-07 02:44:28,512] [main] user.country = ${user.country}
   [testng] [2024-06-07 02:44:28,512] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-07 02:44:37,266] [main] ----------------------------------------
   [testng] [2024-06-07 02:44:37,266] [main] Total files: 944
   [testng] [2024-06-07 02:44:37,266] [main] Scan time: 8.754 s (9 ms/file)
   [testng] [2024-06-07 02:44:37,266] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-07 02:45:03,724] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 02:45:03,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:45:03,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-45-03.log]
   [testng] 02:45:03,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d03d3f3 - End of configuration.
   [testng] [2024-06-07 02:45:03,801] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 02:45:03,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:45:03,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-45-03.log]
   [testng] 02:45:03,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55260ff0 - End of configuration.
   [testng] [2024-06-07 02:45:03,835] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 02:45:03,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:45:03,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-45-03.log]
   [testng] 02:45:03,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eb604d5 - End of configuration.
   [testng] [2024-06-07 02:45:03,856] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 02:45:03,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:45:03,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-45-03.log]
   [testng] 02:45:03,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48644eeb - End of configuration.
   [testng] [2024-06-07 02:45:03,918] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 02:45:03,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:45:03,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-45-03.log]
   [testng] 02:45:03,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4171261f - End of configuration.
   [testng] [2024-06-07 02:45:03,947] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 02:45:03,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:45:03,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-45-03.log]
   [testng] 02:45:03,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d1b1be1 - End of configuration.
   [testng] [2024-06-07 02:45:03,981] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 02:45:03,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:45:03,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:03,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-45-03.log]
   [testng] 02:45:03,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8fffb - End of configuration.
   [testng] [2024-06-07 02:45:04,011] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 02:45:04,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:45:04,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-45-04.log]
   [testng] 02:45:04,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba7f5c1 - End of configuration.
   [testng] [2024-06-07 02:45:04,061] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif: 
   [testng] 02:45:04,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:45:04,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-45-04.log]
   [testng] 02:45:04,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ca5a87 - End of configuration.
   [testng] [2024-06-07 02:45:04,089] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 02:45:04,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:45:04,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-45-04.log]
   [testng] 02:45:04,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@451fb63b - End of configuration.
   [testng] [2024-06-07 02:45:04,119] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 02:45:04,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:45:04,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-45-04.log]
   [testng] 02:45:04,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@272e5e23 - End of configuration.
   [testng] [2024-06-07 02:45:04,147] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 02:45:04,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:45:04,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-45-04.log]
   [testng] 02:45:04,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632945a2 - End of configuration.
   [testng] [2024-06-07 02:45:05,952] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] [2024-06-07 02:45:05,975] [pool-1-thread-7] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] [2024-06-07 02:45:10,723] [pool-1-thread-6] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 minutes 39 seconds
Finished: SUCCESS