Started by upstream project "BIOFORMATS-test-repo" build number 85
originally caused by:
Started by upstream project "Trigger" build number 96
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12649397587391927406.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13078_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:49:35,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:49:35,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:49:35,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:49:35,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:49:35,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:49:35,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:49:35,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:49:35,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:49:35,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:49:35,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:49:35,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:49:35,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:49:35,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:49:35,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:49:35,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:49:35,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:49:35,504 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:49:35,504 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:49:35,504 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:49:35,504 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:49:35,505 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:49:35,505 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:49:35,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-07 02:49:35,515] [main] java.version = 1.8.0_342
[testng] 02:49:35,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:49:35,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:35,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-49-35.log]
[testng] 02:49:35,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-07 02:49:35,565] [main] testng.directory = /data
[testng] [2024-06-07 02:49:35,566] [main] testng.configDirectory = /config
[testng] [2024-06-07 02:49:35,578] [main] testng.multiplier = 1.0
[testng] [2024-06-07 02:49:35,578] [main] testng.in-memory = false
[testng] [2024-06-07 02:49:35,578] [main] testng.allow-missing = false
[testng] [2024-06-07 02:49:35,578] [main] user.language = en
[testng] [2024-06-07 02:49:35,578] [main] user.country = ${user.country}
[testng] [2024-06-07 02:49:35,578] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-07 02:49:36,408] [main] ----------------------------------------
[testng] [2024-06-07 02:49:36,409] [main] Total files: 23
[testng] [2024-06-07 02:49:36,409] [main] Scan time: 0.829 s (36 ms/file)
[testng] [2024-06-07 02:49:36,409] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-07 02:49:41,312] [pool-1-thread-1] Initializing /data/public/NIH/filtered_func_data.nii.gz:
[testng] 02:49:41,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:49:41,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:41,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-49-41.log]
[testng] 02:49:41,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bf49ca4 - End of configuration.
[testng] [2024-06-07 02:49:44,254] [pool-1-thread-12] Initializing /data/public/NIH/minimal.nii:
[testng] 02:49:44,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:49:44,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-49-44.log]
[testng] 02:49:44,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a9cffce - End of configuration.
[testng] [2024-06-07 02:49:44,265] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr:
[testng] 02:49:44,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:49:44,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-49-44.log]
[testng] 02:49:44,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4ee600 - End of configuration.
[testng] [2024-06-07 02:49:44,278] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr:
[testng] 02:49:44,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:49:44,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-49-44.log]
[testng] 02:49:44,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d9b240 - End of configuration.
[testng] [2024-06-07 02:49:44,290] [pool-1-thread-9] Initializing /data/qa-17334/volume4d.nii:
[testng] 02:49:44,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:49:44,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-49-44.log]
[testng] 02:49:44,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@768fddc5 - End of configuration.
[testng] [2024-06-07 02:49:44,310] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz:
[testng] 02:49:44,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:49:44,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-49-44.log]
[testng] 02:49:44,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7ac56a - End of configuration.
[testng] [2024-06-07 02:49:44,531] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz:
[testng] 02:49:44,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:49:44,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-49-44.log]
[testng] 02:49:44,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b975c30 - End of configuration.
[testng] [2024-06-07 02:49:44,725] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr:
[testng] 02:49:44,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:49:44,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-49-44.log]
[testng] 02:49:44,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647eeff2 - End of configuration.
[testng] [2024-06-07 02:49:44,737] [pool-1-thread-5] Initializing /data/public/NIH/filtered_func_data.nii:
[testng] 02:49:44,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:49:44,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-49-44.log]
[testng] 02:49:44,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3af62591 - End of configuration.
[testng] [2024-06-07 02:49:44,754] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii:
[testng] 02:49:44,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:49:44,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-49-44.log]
[testng] 02:49:44,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2dd770 - End of configuration.
[testng] [2024-06-07 02:49:44,770] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr:
[testng] 02:49:44,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:49:44,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-49-44.log]
[testng] 02:49:44,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153c3e4b - End of configuration.
[testng] [2024-06-07 02:49:44,780] [pool-1-thread-2] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr:
[testng] 02:49:44,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:49:44,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:44,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-49-44.log]
[testng] 02:49:44,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d0dfa36 - End of configuration.
[testng] [2024-06-07 02:49:45,922] [pool-1-thread-12] Initializing /data/public/NIH/zstat1.nii:
[testng] [2024-06-07 02:49:45,933] [pool-1-thread-2] Initializing /data/public/NIH/newsirp_final_XML.nii:
[testng] [2024-06-07 02:49:45,952] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr:
[testng] [2024-06-07 02:49:45,960] [pool-1-thread-6] Initializing /data/public/NIH/zstat1.nii.gz:
[testng] [2024-06-07 02:49:46,025] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr:
[testng] [2024-06-07 02:49:46,034] [pool-1-thread-10] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr:
[testng] [2024-06-07 02:49:46,042] [pool-1-thread-5] Initializing /data/public/NIH/minimal.hdr:
[testng] [2024-06-07 02:49:46,051] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_RL_nifti.nii:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS