Started by upstream project "BIOFORMATS-test-repo" build number 87
originally caused by:
Started by upstream project "Trigger" build number 98
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7497908644237780630.sh
+ '[' analyze = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13370_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:10:48,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:10:48,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:10:48,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:10:48,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:10:48,245 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:10:48,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:10:48,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:10:48,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:10:48,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:10:48,247 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:10:48,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:10:48,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:10:48,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:10:48,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:10:48,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:10:48,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:10:48,507 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:10:48,507 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:10:48,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:10:48,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:10:48,508 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:10:48,509 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:10:48,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-09 02:10:48,523] [main] java.version = 17.0.2
[testng] 02:10:48,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:10:48,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:48,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-09_02-10-48.log]
[testng] 02:10:48,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-09 02:10:48,593] [main] testng.directory = /data
[testng] [2024-06-09 02:10:48,593] [main] testng.configDirectory = /config
[testng] [2024-06-09 02:10:48,603] [main] testng.multiplier = 1.0
[testng] [2024-06-09 02:10:48,604] [main] testng.in-memory = false
[testng] [2024-06-09 02:10:48,604] [main] testng.allow-missing = false
[testng] [2024-06-09 02:10:48,604] [main] user.language = en
[testng] [2024-06-09 02:10:48,604] [main] user.country = ${user.country}
[testng] [2024-06-09 02:10:48,604] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-09 02:10:49,259] [main] ----------------------------------------
[testng] [2024-06-09 02:10:49,260] [main] Total files: 21
[testng] [2024-06-09 02:10:49,260] [main] Scan time: 0.655 s (31 ms/file)
[testng] [2024-06-09 02:10:49,260] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-09 02:10:51,225] [pool-1-thread-1] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr:
[testng] 02:10:51,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:10:51,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-09_02-10-51.log]
[testng] 02:10:51,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@635c7634 - End of configuration.
[testng] [2024-06-09 02:10:51,294] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr:
[testng] 02:10:51,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:10:51,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-09_02-10-51.log]
[testng] 02:10:51,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e78b12 - End of configuration.
[testng] [2024-06-09 02:10:51,312] [pool-1-thread-11] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr:
[testng] 02:10:51,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:10:51,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-09_02-10-51.log]
[testng] 02:10:51,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c74ced6 - End of configuration.
[testng] [2024-06-09 02:10:51,339] [pool-1-thread-10] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr:
[testng] 02:10:51,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:10:51,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-09_02-10-51.log]
[testng] 02:10:51,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f2c1ec - End of configuration.
[testng] [2024-06-09 02:10:51,360] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr:
[testng] 02:10:51,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:10:51,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-09_02-10-51.log]
[testng] 02:10:51,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df9a0a6 - End of configuration.
[testng] [2024-06-09 02:10:51,382] [pool-1-thread-8] Initializing /data/frans/ch2bet.hdr:
[testng] 02:10:51,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:10:51,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-09_02-10-51.log]
[testng] 02:10:51,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d486ce - End of configuration.
[testng] [2024-06-09 02:10:51,400] [pool-1-thread-7] Initializing /data/frans/brodmann.hdr:
[testng] 02:10:51,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:10:51,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-09_02-10-51.log]
[testng] 02:10:51,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37108b4a - End of configuration.
[testng] [2024-06-09 02:10:51,416] [pool-1-thread-6] Initializing /data/frans/CT_FOOT.hdr:
[testng] 02:10:51,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:10:51,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-09_02-10-51.log]
[testng] 02:10:51,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3254f22f - End of configuration.
[testng] [2024-06-09 02:10:51,440] [pool-1-thread-5] Initializing /data/frans/CT_CRANI.hdr:
[testng] 02:10:51,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:10:51,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-09_02-10-51.log]
[testng] 02:10:51,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22034798 - End of configuration.
[testng] [2024-06-09 02:10:51,459] [pool-1-thread-4] Initializing /data/frans/betmask.hdr:
[testng] 02:10:51,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:10:51,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-09_02-10-51.log]
[testng] 02:10:51,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fdce4b4 - End of configuration.
[testng] [2024-06-09 02:10:51,472] [pool-1-thread-3] Initializing /data/frans/m000-MR_CHEST.gif:
[testng] 02:10:51,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:10:51,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-09_02-10-51.log]
[testng] 02:10:51,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6732c003 - End of configuration.
[testng] [2024-06-09 02:10:51,507] [pool-1-thread-2] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr:
[testng] 02:10:51,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:10:51,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:51,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-09_02-10-51.log]
[testng] 02:10:51,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31caf268 - End of configuration.
[testng] [2024-06-09 02:10:53,502] [pool-1-thread-11] Initializing /data/frans/CT_APERT.hdr:
[testng] [2024-06-09 02:10:53,512] [pool-1-thread-9] Initializing /data/frans/CT_HAND.hdr:
[testng] [2024-06-09 02:10:53,522] [pool-1-thread-12] Initializing /data/frans/ch2.hdr:
[testng] [2024-06-09 02:10:53,533] [pool-1-thread-1] Initializing /data/frans/aal.hdr:
[testng] [2024-06-09 02:10:53,543] [pool-1-thread-7] Initializing /data/frans/MR_CHEST.hdr:
[testng] [2024-06-09 02:10:53,554] [pool-1-thread-8] Initializing /data/frans/CT_CHEST.hdr:
[testng] [2024-06-09 02:10:53,564] [pool-1-thread-6] Initializing /data/frans/CT_WHOLE.hdr:
[testng] [2024-06-09 02:10:53,573] [pool-1-thread-3] Initializing /data/frans/MR_SEGBRAIN.hdr:
[testng] [2024-06-09 02:10:53,583] [pool-1-thread-5] Initializing /data/frans/CT_KNEE.hdr:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS